Changeset 4061

Timestamp:

Dec 14, 2007, 12:09:16 PM (16 years ago)

Author:

Nicklas Nordborg

Message:

Fixes #838: Change default value of Blockgroup size to 0 in Lowess

File:

• trunk/src/plugins/core/net/sf/basedb/plugins/LowessNormalization.java (modified) (3 diffs)

trunk/src/plugins/core/net/sf/basedb/plugins/LowessNormalization.java

@@ -140 +140 @@
     "blockGroup",
     "Blockgroup size",
-    "The number of arraydesign blocks in each group",
-    new IntegerParameterType(1, null, 1, true)
+    "The number of arraydesign blocks in each group.\n0 = use all blocks as a single group.",
+    new IntegerParameterType(0, null, 0, true)
   );
   
@@ -309 +309 @@
     @param delta
     @param iterations
-    @param blockGroupSize
+    @param blockGroupSize The number of blocks to group and normalise at the same time,
+      if <=0, all blocks on a bioassay are grouped to a single dataset
     @param progress Progress reporter used by the caller to keep track of the progress. Null is allowed   
     @return The normalized bioassayset
@@ -401 +402 @@
         int minBlock = data.get(0).block;
         int maxBlock = data.get(data.size()-1).block;
+        // If 0, we should use all blocks as a single data set
+        if (blockGroupSize <= 0) blockGroupSize = maxBlock - minBlock + 1;
         
         int fromIndex = 0;