Changeset 4367

Timestamp:

Jul 2, 2008, 3:51:58 PM (15 years ago)

Author:

Jari Häkkinen

Message:

Fixes #1077. Changed help text on step parameter, also changed default value for the parameter. The default now corresponds to the BASE1 default.

File:

• branches/2.7-stable/src/plugins/core/net/sf/basedb/plugins/LowessNormalization.java (modified) (2 diffs)

branches/2.7-stable/src/plugins/core/net/sf/basedb/plugins/LowessNormalization.java

@@ -137 +137 @@
   (
     "delta",
-    "Minimum log(intensity) step",
+    "Minimum log10(intensity) step",
     "",
-    new FloatParameterType(0F, null, 0.1F, true)
+    new FloatParameterType(0F, null, 0.043F, true)
   );
   
@@ -651 +651 @@
       {
         double w = Math.abs((smoothCurve[j] - data.get(j).M) * invYWRange);
-        wFit.set(j, w < 1 ? Math.pow(1 - w*w, 2) : 0);
+        wFit.set(j, w < 1 ? Math.pow(1D - w*w, 2) : 0);
       }
     }