Changeset 4480

Timestamp:

Sep 5, 2008, 5:16:58 PM (15 years ago)

Author:

Jari Häkkinen

Message:

Addresses #1106. Moving to GPLv3 in chunked commits.

Location:

trunk

Files:

• .svndigest/config (modified) (1 diff)
• src/info/net/sf/basedb/info/AnnotatedItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/AnnotationInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/AnnotationTypeInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ArrayDesignInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/BasicItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/BioAssaySetInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/CommonItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/DataFileTypeInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ExperimentInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ExtendedPropertyInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/NameableInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/OwnedItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ProjectInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/QueryOptions.java (modified) (1 diff)
• src/info/net/sf/basedb/info/QueryParameter.java (modified) (1 diff)
• src/info/net/sf/basedb/info/RawBioAssayInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ReporterListInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/SharedItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ToTransferable.java (modified) (1 diff)
• src/info/net/sf/basedb/info/Transferable.java (modified) (1 diff)
• src/info/net/sf/basedb/info/VersionInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/package.html (modified) (1 diff)
• src/install/net/sf/basedb/install/InitDB.java (modified) (1 diff)
• src/install/net/sf/basedb/install/OneTimeFix.java (modified) (1 diff)
• src/install/net/sf/basedb/install/Webclient.java (modified) (1 diff)
• src/misc/compiler/net/sf/basedb/clients/web/extensions/XJspCompiler.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/AbstractFlatFileImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/AnnotationFlatFileImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/Base1PluginExecuter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/BioAssaySetExporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/CdfFileReporterImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/FormulaFilter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/GalExporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/HelpExporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/HelpImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/IlluminaRawDataImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/IntensityCalculatorPlugin.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/JepExtraValueCalculator.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/JepIntensityTransformer.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/LowessNormalization.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/MedianRatioNormalization.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/PackedFileExporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/PlateFlatFileImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/PlateMappingExporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/PlateMappingImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/PluginConfigurationExporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/PluginConfigurationImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/PrintMapFlatFileImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/RawDataFlatFileImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/ReporterFlatFileImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/ReporterMapFlatFileImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/SpotImageCreator.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/TarFileUnpacker.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/ZipFileUnpacker.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/AbstractItemImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/ArrayBatchImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/ArrayDesignImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/ArraySlideImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/BioSourceImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/ExtractImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/FallbackIdMethod.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/HybridizationImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/IdMethod.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/InternalIdMethod.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/LabeledExtractImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/MultiPropertyIdMethod.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/PropertyIdMethod.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/RawBioAssayImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/SampleImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/batchimport/ScanImporter.java (modified) (1 diff)
• src/plugins/core/net/sf/basedb/plugins/util/Parameters.java (modified) (1 diff)
• src/test/Base1NullPlugin.java (modified) (1 diff)
• src/test/Base1TestPlugin.java (modified) (1 diff)
• src/test/JarPlugin.java (modified) (1 diff)
• src/test/JarPluginAbout.java (modified) (1 diff)
• src/test/JarPluginInterface.java (modified) (1 diff)
• src/test/JarPluginType.java (modified) (1 diff)
• src/test/NullPlugin.java (modified) (1 diff)
• src/test/NullPluginInterface.java (modified) (1 diff)
• src/test/PermissionPlugin.java (modified) (1 diff)
• src/test/TestAll.java (modified) (1 diff)
• src/test/TestAnalyzePluginUtil.java (modified) (1 diff)
• src/test/TestAnnotation.java (modified) (1 diff)
• src/test/TestAnnotationFlatFileImporter.java (modified) (1 diff)
• src/test/TestAnnotationType.java (modified) (1 diff)
• src/test/TestAnnotationTypeCategory.java (modified) (1 diff)
• src/test/TestAnyToAny.java (modified) (1 diff)
• src/test/TestArrayBatch.java (modified) (1 diff)
• src/test/TestArrayDesign.java (modified) (1 diff)
• src/test/TestArrayDesignBlock.java (modified) (1 diff)
• src/test/TestArraySlide.java (modified) (1 diff)
• src/test/TestBase1PluginExecuter.java (modified) (1 diff)
• src/test/TestBioAsssaySetExporter.java (modified) (1 diff)
• src/test/TestBioSource.java (modified) (1 diff)
• src/test/TestClient.java (modified) (1 diff)
• src/test/TestClientDefaultSetting.java (modified) (1 diff)
• src/test/TestContext.java (modified) (1 diff)
• src/test/TestDataFileType.java (modified) (1 diff)
• src/test/TestDbControl.java (modified) (1 diff)
• src/test/TestDbInfo.java (modified) (1 diff)
• src/test/TestDirectory.java (modified) (1 diff)
• src/test/TestDirty.java (modified) (1 diff)
• src/test/TestDiskUsage.java (modified) (1 diff)
• src/test/TestDropIndexes.java (modified) (1 diff)
• src/test/TestExperiment.java (modified) (1 diff)
• src/test/TestExtensions.java (modified) (2 diffs)
• src/test/TestExternalPluginInstaller.java (modified) (1 diff)
• src/test/TestExtraValueType.java (modified) (1 diff)
• src/test/TestExtract.java (modified) (1 diff)
• src/test/TestFile.java (modified) (1 diff)
• src/test/TestFileType.java (modified) (1 diff)
• src/test/TestFlatFileParser.java (modified) (1 diff)
• src/test/TestFormula.java (modified) (1 diff)
• src/test/TestGalExporter.java (modified) (1 diff)
• src/test/TestGlobalDefaultSetting.java (modified) (1 diff)
• src/test/TestGroup.java (modified) (1 diff)
• src/test/TestHardware.java (modified) (1 diff)
• src/test/TestHardwareType.java (modified) (1 diff)
• src/test/TestHelp.java (modified) (1 diff)
• src/test/TestHybridization.java (modified) (1 diff)
• src/test/TestIlluminaImporter.java (modified) (1 diff)
• src/test/TestInstall.java (modified) (1 diff)
• src/test/TestItemImporter.java (modified) (1 diff)
• src/test/TestItemKey.java (modified) (1 diff)
• src/test/TestJarClassLoader.java (modified) (1 diff)
• src/test/TestJep.java (modified) (1 diff)
• src/test/TestJob.java (modified) (1 diff)
• src/test/TestJobAgent.java (modified) (1 diff)
• src/test/TestLabel.java (modified) (1 diff)
• src/test/TestLabeledExtract.java (modified) (1 diff)
• src/test/TestLowessNormalization.java (modified) (1 diff)
• src/test/TestMedianRatioNormalization.java (modified) (1 diff)
• src/test/TestMessage.java (modified) (1 diff)
• src/test/TestMimeType.java (modified) (1 diff)
• src/test/TestNews.java (modified) (1 diff)
• src/test/TestNumberFormat.java (modified) (1 diff)
• src/test/TestPackedFileExporter.java (modified) (1 diff)
• src/test/TestParameterType.java (modified) (1 diff)
• src/test/TestPath.java (modified) (1 diff)
• src/test/TestPlate.java (modified) (1 diff)
• src/test/TestPlateFlatFileImporter.java (modified) (1 diff)
• src/test/TestPlateGeometry.java (modified) (1 diff)
• src/test/TestPlateMapping.java (modified) (1 diff)
• src/test/TestPlateType.java (modified) (1 diff)
• src/test/TestPlatform.java (modified) (1 diff)
• src/test/TestPluginConfiguration.java (modified) (1 diff)
• src/test/TestPluginDefinition.java (modified) (1 diff)
• src/test/TestPluginType.java (modified) (1 diff)
• src/test/TestPresets.java (modified) (1 diff)
• src/test/TestPrintMapFlatFileImporter.java (modified) (1 diff)
• src/test/TestProject.java (modified) (1 diff)
• src/test/TestProjectKey.java (modified) (1 diff)
• src/test/TestProtocol.java (modified) (1 diff)
• src/test/TestProtocolType.java (modified) (1 diff)
• src/test/TestQuota.java (modified) (1 diff)
• src/test/TestQuotaType.java (modified) (1 diff)
• src/test/TestRawBioAssay.java (modified) (1 diff)
• src/test/TestRawDataFlatFileImporter.java (modified) (1 diff)
• src/test/TestReporter.java (modified) (1 diff)
• src/test/TestReporterFlatFileImporter.java (modified) (1 diff)
• src/test/TestReporterList.java (modified) (1 diff)
• src/test/TestReporterMapFlatFileImporter.java (modified) (1 diff)
• src/test/TestReporterType.java (modified) (1 diff)
• src/test/TestRole.java (modified) (1 diff)
• src/test/TestRoleKey.java (modified) (1 diff)
• src/test/TestSample.java (modified) (1 diff)
• src/test/TestScan.java (modified) (1 diff)
• src/test/TestSession.java (modified) (1 diff)
• src/test/TestSessionControl.java (modified) (1 diff)
• src/test/TestSoftware.java (modified) (1 diff)
• src/test/TestSoftwareType.java (modified) (1 diff)
• src/test/TestSpotImages.java (modified) (1 diff)
• src/test/TestTrashcan.java (modified) (1 diff)
• src/test/TestUpdate.java (modified) (1 diff)
• src/test/TestUpdateIndexes.java (modified) (1 diff)
• src/test/TestUser.java (modified) (1 diff)
• src/test/TestUserClientSetting.java (modified) (1 diff)
• src/test/TestUserDefaultSetting.java (modified) (1 diff)
• src/test/TestUtil.java (modified) (1 diff)
• src/test/TestWebservices.java (modified) (1 diff)
• src/test/TestXMLUtil.java (modified) (1 diff)
• src/test/data/extended-properties.dtd (modified) (1 diff)
• src/test/data/extended-properties.xml (modified) (1 diff)
• src/test/data/test.extensions.xml (modified) (2 diffs)
• src/test/data/test.schema.xml (modified) (2 diffs)
• src/test/data/test.schema.xsd (modified) (2 diffs)
• src/test/net/sf/basedb/test/AffymetrixData.java (modified) (1 diff)
• src/test/net/sf/basedb/test/CmdLine.java (modified) (1 diff)
• src/test/net/sf/basedb/test/FileUtil.java (modified) (1 diff)
• src/test/net/sf/basedb/test/MouseData.java (modified) (1 diff)
• src/test/net/sf/basedb/test/PluginUtil.java (modified) (1 diff)
• src/test/net/sf/basedb/test/TestUtil.java (modified) (1 diff)
• src/test/net/sf/basedb/test/merge/MergeTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/merge/Run.java (modified) (1 diff)
• src/test/net/sf/basedb/test/performance/Config.java (modified) (1 diff)
• src/test/net/sf/basedb/test/performance/FilterTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/performance/LowessTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/performance/PrepareTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/performance/RawDataTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/performance/RootTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/performance/Run.java (modified) (1 diff)
• src/test/net/sf/basedb/test/performance/Util.java (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/AdminTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/AnalysisTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/GuestTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/PowerUserTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/RootTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/Run.java (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/UserTest.java (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/Util.java (modified) (1 diff)
• src/test/run.bat (modified) (1 diff)
• src/test/run.sh (modified) (1 diff)
• src/test/set_classpath.bat (modified) (1 diff)
• src/test/set_classpath.sh (modified) (1 diff)
• src/test/test.bat (modified) (1 diff)
• src/test/test.sh (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/AbstractRPCClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/AnnotationTypeClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ArrayDesignClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/BioAssaySetClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ConfigurableServiceFactory.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ExperimentClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/Factories.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ProjectClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/RawBioAssayClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ReporterClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ServiceFactory.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/SessionClient.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/AbstractRPCService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/AnnotationTypeService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ArrayDesignService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/BaseFileDataSource.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/BioAssaySetService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ExperimentService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ProjectService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/RawBioAssayService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ReporterService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ServicesUtil.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/SessionService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/TempFileDataSource.java (modified) (1 diff)

trunk/.svndigest/config

@@ -8 +8 @@
 # BASE is free software; you can redistribute it and/or modify it
 # under the terms of the GNU General Public License as published by
-# the Free Software Foundation; either version 2 of the License, or
+# the Free Software Foundation; either version 3 of the License, or
 # (at your option) any later version.
 #

trunk/src/info/net/sf/basedb/info/AnnotatedItemInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/AnnotationInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/AnnotationTypeInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/ArrayDesignInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/BasicItemInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/BioAssaySetInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/CommonItemInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/DataFileTypeInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/ExperimentInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/ExtendedPropertyInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/NameableInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/OwnedItemInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/ProjectInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/QueryOptions.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/QueryParameter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/RawBioAssayInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/ReporterListInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/SharedItemInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/ToTransferable.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/Transferable.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/VersionInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/info/net/sf/basedb/info/package.html

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/install/net/sf/basedb/install/InitDB.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/install/net/sf/basedb/install/OneTimeFix.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/install/net/sf/basedb/install/Webclient.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/misc/compiler/net/sf/basedb/clients/web/extensions/XJspCompiler.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/AbstractFlatFileImporter.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/AnnotationFlatFileImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/Base1PluginExecuter.java

@@ -10 +10 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/BioAssaySetExporter.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/CdfFileReporterImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/FormulaFilter.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/GalExporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/HelpExporter.java

@@ -10 +10 @@
 BASE is free software; you can redistribute it and/or modify it
 under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
+the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/HelpImporter.java

@@ -10 +10 @@
 BASE is free software; you can redistribute it and/or modify it
 under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
+the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/IlluminaRawDataImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/IntensityCalculatorPlugin.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/JepExtraValueCalculator.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/JepIntensityTransformer.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/LowessNormalization.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/MedianRatioNormalization.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/PackedFileExporter.java

@@ -9 +9 @@
 BASE is free software; you can redistribute it and/or modify it
 under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
+the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/PlateFlatFileImporter.java

@@ -12 +12 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/PlateMappingExporter.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/PlateMappingImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/PluginConfigurationExporter.java

@@ -10 +10 @@
 BASE is free software; you can redistribute it and/or modify it
 under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
+the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/PluginConfigurationImporter.java

@@ -10 +10 @@
 BASE is free software; you can redistribute it and/or modify it
 under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
+the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/PrintMapFlatFileImporter.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/RawDataFlatFileImporter.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/ReporterFlatFileImporter.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/ReporterMapFlatFileImporter.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/SpotImageCreator.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/TarFileUnpacker.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/ZipFileUnpacker.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/AbstractItemImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/ArrayBatchImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/ArrayDesignImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/ArraySlideImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/BioSourceImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/ExtractImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/FallbackIdMethod.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/HybridizationImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/IdMethod.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/InternalIdMethod.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/LabeledExtractImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/MultiPropertyIdMethod.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/PropertyIdMethod.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/RawBioAssayImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/SampleImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/batchimport/ScanImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/plugins/core/net/sf/basedb/plugins/util/Parameters.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/Base1NullPlugin.java

@@ -14 +14 @@
  BASE is free software; you can redistribute it and/or modify it
  under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
+ the Free Software Foundation; either version 3 of the License, or
  (at your option) any later version.
 

trunk/src/test/Base1TestPlugin.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
   

trunk/src/test/JarPlugin.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/JarPluginAbout.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/JarPluginInterface.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/JarPluginType.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/NullPlugin.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/NullPluginInterface.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/PermissionPlugin.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestAll.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestAnalyzePluginUtil.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestAnnotation.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestAnnotationFlatFileImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestAnnotationType.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestAnnotationTypeCategory.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestAnyToAny.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestArrayBatch.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestArrayDesign.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestArrayDesignBlock.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestArraySlide.java

@@ -22 +22 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestBase1PluginExecuter.java

@@ -29 +29 @@
  BASE is free software; you can redistribute it and/or modify it
  under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
+ the Free Software Foundation; either version 3 of the License, or
  (at your option) any later version.
 

trunk/src/test/TestBioAsssaySetExporter.java

@@ -48 +48 @@
  BASE is free software; you can redistribute it and/or modify it
  under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
+ the Free Software Foundation; either version 3 of the License, or
  (at your option) any later version.
 

trunk/src/test/TestBioSource.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestClient.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestClientDefaultSetting.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestContext.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestDataFileType.java

@@ -9 +9 @@
    BASE is free software; you can redistribute it and/or
    modify it under the terms of the GNU General Public License
-   as published by the Free Software Foundation; either version 2
+   as published by the Free Software Foundation; either version 3
    of the License, or (at your option) any later version.
   

trunk/src/test/TestDbControl.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestDbInfo.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestDirectory.java

@@ -23 +23 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestDirty.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestDiskUsage.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestDropIndexes.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestExperiment.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestExtensions.java

@@ -1 +1 @@
 /*
-  $Id:  $
+  $Id$
 
   Copyright (C) 2008 Nicklas Nordborg
@@ -8 +8 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestExternalPluginInstaller.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestExtraValueType.java

@@ -14 +14 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestExtract.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestFile.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestFileType.java

@@ -15 +15 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestFlatFileParser.java

@@ -22 +22 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestFormula.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestGalExporter.java

@@ -9 +9 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestGlobalDefaultSetting.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestGroup.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestHardware.java

@@ -21 +21 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestHardwareType.java

@@ -16 +16 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestHelp.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestHybridization.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestIlluminaImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestInstall.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestItemImporter.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestItemKey.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestJarClassLoader.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestJep.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestJob.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestJobAgent.java

@@ -9 +9 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestLabel.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestLabeledExtract.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestLowessNormalization.java

@@ -26 +26 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/TestMedianRatioNormalization.java

@@ -22 +22 @@
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
+ * as published by the Free Software Foundation; either version 3
  * of the License, or (at your option) any later version.
  * 

trunk/src/test/TestMessage.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestMimeType.java

@@ -18 +18 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestNews.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestNumberFormat.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPackedFileExporter.java

@@ -9 +9 @@
 BASE is free software; you can redistribute it and/or modify it
 under the terms of the GNU General Public License as published by
-the Free Software Foundation; either version 2 of the License, or
+the Free Software Foundation; either version 3 of the License, or
 (at your option) any later version.
 

trunk/src/test/TestParameterType.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPath.java

@@ -12 +12 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestPlate.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPlateFlatFileImporter.java

@@ -11 +11 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestPlateGeometry.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPlateMapping.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPlateType.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPlatform.java

@@ -9 +9 @@
    BASE is free software; you can redistribute it and/or
    modify it under the terms of the GNU General Public License
-   as published by the Free Software Foundation; either version 2
+   as published by the Free Software Foundation; either version 3
    of the License, or (at your option) any later version.
   

trunk/src/test/TestPluginConfiguration.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPluginDefinition.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPluginType.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
   

trunk/src/test/TestPresets.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestPrintMapFlatFileImporter.java

@@ -27 +27 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestProject.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestProjectKey.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestProtocol.java

@@ -20 +20 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestProtocolType.java

@@ -19 +19 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestQuota.java

@@ -27 +27 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestQuotaType.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestRawBioAssay.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestRawDataFlatFileImporter.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestReporter.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestReporterFlatFileImporter.java

@@ -28 +28 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestReporterList.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestReporterMapFlatFileImporter.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestReporterType.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestRole.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestRoleKey.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestSample.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestScan.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestSession.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestSessionControl.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestSoftware.java

@@ -21 +21 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestSoftwareType.java

@@ -17 +17 @@
  BASE is free software; you can redistribute it and/or
  modify it under the terms of the GNU General Public License
- as published by the Free Software Foundation; either version 2
+ as published by the Free Software Foundation; either version 3
  of the License, or (at your option) any later version.
 

trunk/src/test/TestSpotImages.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestTrashcan.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestUpdate.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestUpdateIndexes.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestUser.java

@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestUserClientSetting.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestUserDefaultSetting.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestUtil.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestWebservices.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/TestXMLUtil.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/data/extended-properties.dtd

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/data/extended-properties.xml

@@ -12 +12 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/data/test.extensions.xml

@@ -1 +1 @@
 <?xml version="1.0" encoding="UTF-8" ?>
 <!--
-  $Id:  $
+  $Id$
 
   Copyright (C) Nicklas Nordborg
@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/data/test.schema.xml

@@ -1 +1 @@
 <?xml version="1.0"?>
 <!--
-  $Id: $
+  $Id$
 
   Copyright (C) 2005 Nicklas Nordborg
@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/data/test.schema.xsd

@@ -1 +1 @@
 <?xml version="1.0"?>
 <!--
-  $Id:  $
+  $Id$
 
   Copyright (C) 2005 Nicklas Nordborg
@@ -11 +11 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/AffymetrixData.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/CmdLine.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/FileUtil.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/MouseData.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/PluginUtil.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/TestUtil.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/merge/MergeTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/merge/Run.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/performance/Config.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/performance/FilterTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/performance/LowessTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/performance/PrepareTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/performance/RawDataTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/performance/RootTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/performance/Run.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/performance/Util.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/roles/AdminTest.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/roles/AnalysisTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/roles/GuestTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/roles/PowerUserTest.java

@@ -10 +10 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/roles/RootTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/roles/Run.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/roles/UserTest.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/net/sf/basedb/test/roles/Util.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or modify it
   under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
+  the Free Software Foundation; either version 3 of the License, or
   (at your option) any later version.
 

trunk/src/test/run.bat

@@ -10 +10 @@
 REM BASE is free software; you can redistribute it and/or
 REM modify it under the terms of the GNU General Public License
-REM as published by the Free Software Foundation; either version 2
+REM as published by the Free Software Foundation; either version 3
 REM of the License, or (at your option) any later version.
 REM

trunk/src/test/run.sh

@@ -9 +9 @@
 # BASE is free software; you can redistribute it and/or
 # modify it under the terms of the GNU General Public License
-# as published by the Free Software Foundation; either version 2
+# as published by the Free Software Foundation; either version 3
 # of the License, or (at your option) any later version.
 #

trunk/src/test/set_classpath.bat

@@ -9 +9 @@
 REM BASE is free software; you can redistribute it and/or
 REM modify it under the terms of the GNU General Public License
-REM as published by the Free Software Foundation; either version 2
+REM as published by the Free Software Foundation; either version 3
 REM of the License, or (at your option) any later version.
 REM

trunk/src/test/set_classpath.sh

@@ -8 +8 @@
 # BASE is free software; you can redistribute it and/or modify it
 # under the terms of the GNU General Public License as published by
-# the Free Software Foundation; either version 2 of the License, or
+# the Free Software Foundation; either version 3 of the License, or
 # (at your option) any later version.
 # 

trunk/src/test/test.bat

@@ -9 +9 @@
 REM BASE is free software; you can redistribute it and/or modify it
 REM under the terms of the GNU General Public License as published by
-REM the Free Software Foundation; either version 2 of the License, or
+REM the Free Software Foundation; either version 3 of the License, or
 REM (at your option) any later version.
 REM 

trunk/src/test/test.sh

@@ -8 +8 @@
 # BASE is free software; you can redistribute it and/or modify it
 # under the terms of the GNU General Public License as published by
-# the Free Software Foundation; either version 2 of the License, or
+# the Free Software Foundation; either version 3 of the License, or
 # (at your option) any later version.
 # 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/AbstractRPCClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/AnnotationTypeClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ArrayDesignClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/BioAssaySetClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ConfigurableServiceFactory.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ExperimentClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/Factories.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ProjectClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/RawBioAssayClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ReporterClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ServiceFactory.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/SessionClient.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/AbstractRPCService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/AnnotationTypeService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/ArrayDesignService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/BaseFileDataSource.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/BioAssaySetService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/ExperimentService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/ProjectService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/RawBioAssayService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/ReporterService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/ServicesUtil.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/SessionService.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.
 

trunk/src/webservices/server/net/sf/basedb/ws/server/TempFileDataSource.java

@@ -9 +9 @@
   BASE is free software; you can redistribute it and/or
   modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
+  as published by the Free Software Foundation; either version 3
   of the License, or (at your option) any later version.