Changeset 4539 for trunk/www/biomaterials/samples/view_sample.jsp

Timestamp:

Sep 18, 2008, 5:16:23 PM (14 years ago)

Author:

Martin Svensson

Message:

References #1092 Two of three biomaterials are updated and tested.Labeled extract is not done yet.

File:

• trunk/www/biomaterials/samples/view_sample.jsp (modified) (3 diffs)

trunk/www/biomaterials/samples/view_sample.jsp

@@ -38 +38 @@
   import="net.sf.basedb.core.User"
   import="net.sf.basedb.core.Group"
+  import="net.sf.basedb.core.ItemProxy"
   import="net.sf.basedb.core.ItemQuery"
   import="net.sf.basedb.core.ItemResultIterator"
@@ -56 +57 @@
   import="net.sf.basedb.util.formatter.Formatter"
   import="net.sf.basedb.clients.web.formatter.FormatterFactory"
+  import="java.util.ArrayList"
   import="java.util.Collections"
   import="java.util.Date"
@@ -369 +371 @@
         <%
       }
+      
+      // Samples this item is pooled in.
+      Set<ItemProxy> childSet = sample.getUsingItems();
+      List<Sample> childSamples = new ArrayList<Sample>();
+      for (ItemProxy itemProxy : childSet)
+      {
+        if (Item.SAMPLE.equals(itemProxy.getType()))
+        {
+          childSamples.add((Sample)itemProxy.getItem(dc));
+        }
+      }
+      if (childSamples.size() == 0)
+      {
+        %>
+        <h4>Pooled in extracts</h4>
+        No samples have been pooled from this sample
+        (or, you don't have permission to view them).
+        <%
+      }
+      else
+      {
+        %>
+        <h4 class="docked">Pooled in samples</h4>
+        <tbl:table 
+          id="poolChilds"
+          clazz="itemlist"
+          columns="all"
+          >
+          <tbl:columndef 
+            id="name"
+            title="Name"
+          />
+          <tbl:columndef 
+            id="quantity"
+            title="Original quantity (µg)"
+          />
+          <tbl:columndef 
+            id="parents"
+            title="Used samples[quantity]" 
+          />
+          <tbl:columndef 
+            id="description"
+            title="Description"
+          />
+          <tbl:data>
+            <tbl:columns></tbl:columns>
+            <tbl:rows>
+            <%
+            for (Sample s : childSamples)
+            {
+              BioMaterialEvent poolEvent = s.getCreationEvent();
+              ItemQuery<Sample> samplesQuery = (ItemQuery<Sample>)poolEvent.getSources();
+              samplesQuery.include(Include.ALL);
+              samplesQuery.order(Orders.asc(Hql.property("name")));
+              ItemResultList<Sample> parentSamples = samplesQuery.list(dc);
+              %>
+              <tbl:row>
+                <tbl:cell column="name">
+                  <base:icon 
+                    image="deleted.gif" 
+                    tooltip="This item has been scheduled for deletion" 
+                    visible="<%=s.isRemoved()%>"
+                  />
+                  <%=Base.getLinkedName(ID, s, false, true)%>
+                </tbl:cell>
+                <tbl:cell column="quantity"><%=Values.formatNumber(s.getOriginalQuantity(), 2)%></tbl:cell>
+                <tbl:cell column="parents">
+                <%
+                String separator = "";
+                for (Sample parent : parentSamples)
+                {
+                  out.write(separator);
+                  if (parent.equals(sample))
+                      out.write(HTML.encodeTags(parent.getName()));
+                  else                    
+                    out.write(Base.getLinkedName(ID, parent, false, true));
+                  out.write("[" + Values.formatNumber(poolEvent.getUsedQuantity(parent), 2) + "µg]");
+                  separator = ", ";
+                }
+                %>
+                </tbl:cell>
+                <tbl:cell column="description"><%=HTML.encodeTags(s.getDescription())%></tbl:cell>
+              </tbl:row>
+              <%
+            }
+            %>            
+            </tbl:rows>
+          </tbl:data>
+        </tbl:table>
+        <%
+      }
+        
+      // Extracts created from this sample
       ItemQuery<Extract> extractQuery = sample.getExtracts();
       extractQuery.include(Include.ALL);