Ignore:
Timestamp:
Feb 23, 2009, 2:54:13 PM (14 years ago)
Author:
Nicklas Nordborg
Message:

Updated 'roles' test instructions to make them compatible with the automated test program.

File:
1 edited

Legend:

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  • branches/2.10-stable/doc/test/roles/index.html

    r4780 r4783  
    286286        <li>Reporter map importer</li>
    287287        <li>Print map importer</li>
     288        <li>Array design importer</li>
     289        <li>Array batch importer</li>
     290        <li>Array slide importer</li>
    288291        </ul>
    289292      </td>
    … …  
    12641267    done in two different ways, .
    12651268  </p>
    1266  
    1267   <p>
    1268     First activate the <code>Project A</code> project and then do one of following proceedures.
    1269   </p>
    1270   <p>
    1271     Use the batch importers for each item type.
    1272     <ol>
    1273       <li>Click on the <code>Import</code> button on the list page.</li>
    1274       <li>Select &lt;itemtype&gt;Importer in the plug-in drop-down list and click <code>Next</code></li>
    1275       <li><b>Test with file:</b> using the right file(listed below) and set the parsing parameters
    1276         by using the <code>Auto generate</code> button on the <code>Column mapping</code> tab.
    1277         <table class="listing" cellspacing="0" cellpadding="2" border="0">
    1278         <tr>
    1279           <th>Itemtype</th>
    1280           <th>File</th>
    1281         </tr>
    1282         <tr>
    1283           <td>Biosource</td>
    1284           <td>biosource_out.txt</td>       
    1285         </tr>
    1286         <tr>
    1287           <td>Samples</td>
    1288           <td>sample_out.txt</td>
    1289         </tr>
    1290         <tr>
    1291           <td>Extracts</td>
    1292           <td>extract_out.txt</td>
    1293         </tr>
    1294         <tr>
    1295           <td>Labeled extracts</td>
    1296           <td>labeledextract_out.txt</td>
    1297         </tr>
    1298         <tr>
    1299           <td>Hybridizations</td>
    1300           <td>hybridization_out.txt</td>
    1301         </tr>
    1302         <tr>
    1303           <td>Scans</td>
    1304           <td>scan_out.txt</td>
    1305         </tr>
    1306         <tr>
    1307           <td>Raw bioassays</td>
    1308           <td>rawbioassay_out.txt</td>
    1309         </tr>
    1310         </table>
    1311         The files listed for biosource and samples also contains annotations
    1312         for the items and these files should also be used with the annotation importer.
    1313         The procedure is the same as for batch importers except that only <code>\\Name\\</code>
    1314         is needed in the column mapping. The annotation column should be selected by default in
    1315         the second wizzard-step.       
    1316       </li>
    1317       <li>Start the import-job by clicking on the <code>Finish</code> button on the third wizzard-page.</li>
    1318       <li>Then <a href="#inheritannotations">go to the step</a> in the next list where inherited annotations are set to the raw data
    1319         and proceed from there.</li>     
    1320     </ol>
    1321   </p>
    1322   <p>
    1323   Inserting each item manually
     1269  <h3>First step</h3>
     1270 
    13241271  <ol>
     1272  <li>Activate the <code>Project A</code> project.
     1273    <p>
    13251274  <li>
    13261275    Create a bioplate:
    … …  
    13361285    </table>
    13371286    <p>
     1287    <li>Continue with the second step, which can be done with batch importers or
     1288      manually.
     1289   
     1290  </ol>
     1291 
     1292 
     1293  <h3>Second step (using batch importers)</h3>
     1294
     1295  <ol>
     1296    <li>Click on the <code>Import</code> button on the list page.</li>
     1297    <li>Select &lt;itemtype&gt;Importer in the plug-in drop-down list and click <code>Next</code></li>
     1298    <li><b>Test with file:</b> using the right file(listed below) and set the parsing parameters
     1299      by using the <code>Auto generate</code> button on the <code>Column mapping</code> tab.
     1300      <table class="listing" cellspacing="0" cellpadding="2" border="0">
     1301      <tr>
     1302        <th>Itemtype</th>
     1303        <th>File</th>
     1304      </tr>
     1305      <tr>
     1306        <td>Biosource</td>
     1307        <td>biosource_out.txt</td>       
     1308      </tr>
     1309      <tr>
     1310        <td>Samples</td>
     1311        <td>sample_out.txt</td>
     1312      </tr>
     1313      <tr>
     1314        <td>Extracts</td>
     1315        <td>extract_out.txt</td>
     1316      </tr>
     1317      <tr>
     1318        <td>Labeled extracts</td>
     1319        <td>labeledextract_out.txt</td>
     1320      </tr>
     1321      <tr>
     1322        <td>Hybridizations</td>
     1323        <td>hybridization_out.txt</td>
     1324      </tr>
     1325      <tr>
     1326        <td>Scans</td>
     1327        <td>scan_out.txt</td>
     1328      </tr>
     1329      <tr>
     1330        <td>Raw bioassays</td>
     1331        <td>rawbioassay_out.txt</td>
     1332      </tr>
     1333      </table>
     1334      The files listed for biosource and samples also contains annotations
     1335      for the items and these files should also be used with the annotation importer.
     1336      The procedure is the same as for batch importers except that only <code>\Name\</code>
     1337      is needed in the column mapping. The annotation column should be selected by default in
     1338      the second wizzard-step.       
     1339    </li>
     1340    <li>Start the import-job by clicking on the <code>Finish</code> button on the third wizzard-page.</li>
     1341    <li>Continue with <a href="#step3">the third step</a>.</li>     
     1342  </ol>
     1343 
     1344  <h3>Second step (create items manually)</h3>
     1345  <ol>
    13381346  <li>
    13391347    Create a biosource:
    … …  
    17171725    <p>
    17181726  </li>
    1719  
     1727  </ol>
     1728 
     1729  <a name="step3"></a>
     1730  <h3>Third step</h3>
     1731  <ol>
    17201732  <li>
    17211733    Create experiments:
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