Changeset 4803

Timestamp:

Mar 6, 2009, 3:37:33 PM (14 years ago)

Author:

Nicklas Nordborg

Message:

References #1238: Check performance of BioAssaySetExporter?

Added test code for generating export jobs.

Location:

trunk/src/test/net/sf/basedb/test/performance

Files:

• ExportTest.java (added)
• Run.java (modified) (2 diffs)
• Util.java (modified) (1 diff)

trunk/src/test/net/sf/basedb/test/performance/Run.java

@@ -74 +74 @@
       tests++;
     }
+    if (ok && (all || cmds.contains("export")))
+    {
+      String bioAssaySet = cmdLine.getOption("-b", null);
+      if (bioAssaySet != null)
+      {
+        ok = ExportTest.run(user, password, bioAssaySet);
+        tests++;
+      }
+      else
+      {
+        TestUtil.write("No name for bioassay set specified. Use -b option!\n\n");
+      }
+    }
     if (ok && cmds.contains("clean"))
     {
@@ -91 +104 @@
   {
     TestUtil.write(
-      "test.sh performance [-n xxx] [-u user] [-p password] <cmd>\n" + 
+      "test.sh performance [-n xxx] [-u user] [-p password] [-b bioassayset] <cmd>\n" + 
       "     -n = number of items to import; default = 100\n" +
       "     -u = username; default = root\n" +
       "     -p = password; default = root\n" +
+      "     -b = Name of bioassay set to export; no default\n" +
       "     cmd = the tests to run; all, raw\n\n");
     

trunk/src/test/net/sf/basedb/test/performance/Util.java

@@ -124 +124 @@
   }
   
+  /**
+    Find all bioassaysets with a matching name using LIKE comparison
+  */
+  public static List<BioAssaySet> findAllBioAssaySets(DbControl dc, Experiment experiment, String name)
+  {
+    TestUtil.write("--Loading bioassaysets: " + name);
+    ItemQuery<BioAssaySet> query = experiment.getBioAssaySets();
+    query.restrict(Restrictions.like(Hql.property("name"), Expressions.string(name)));
+    query.order(Orders.asc(Hql.property("name")));
+    List<BioAssaySet> result = query.list(dc);
+    return result;
+  }
+