Changeset 4821

Timestamp:

Mar 18, 2009, 3:42:35 PM (15 years ago)

Author:

Nicklas Nordborg

Message:

References #1238: Check performance of BioAssaySetExporter?

Need special handling of 'position' column, since technically it is part of the spot data, but in reality it is used as a reporter field. The fix is needed since otherwise the position will not be written for spots that doesn't have a reporter.

File:

• trunk/src/plugins/core/net/sf/basedb/plugins/BioAssaySetExporter.java (modified) (2 diffs)

trunk/src/plugins/core/net/sf/basedb/plugins/BioAssaySetExporter.java

@@ -546 +546 @@
     for (String field : reporterFields)
     {
-      out.print("\t" + qi.get(field).getExportName());
+      QueryItem item = qi.get(field);
+      out.print("\t" + item.getExportName());
+      if ("position".equals(item.getExportName())) noReporter.append("{pos}");
       noReporter.append("\t");
     }
@@ -635 +637 @@
         }
         String reporter = reporterLine.get(currentPos);
-        if (reporter == null) reporter = noReporter.toString();
+        if (reporter == null) 
+        {
+          reporter = noReporter.toString().replace("{pos}", Integer.toString(currentPos));
+        }
         out.print(reporter);
       }