Changeset 5081

Timestamp:

Aug 27, 2009, 1:08:04 PM (13 years ago)

Author:

Nicklas Nordborg

Message:

References #1362: Validate the number of raw data spots against the number of array design features

Need to ignore this test with Affymetrix data since the array design has the number of probesets while the raw bioassay has the number of cells. The numbers are very different since one probeset is made up of multiple cells.

Location:

branches/2.13-stable

Files:

• doc/test/roles/index.html (modified) (1 diff)
• src/test/net/sf/basedb/test/roles/AnalysisTest.java (modified) (1 diff)

branches/2.13-stable/doc/test/roles/index.html

@@ -1886 +1886 @@
       <td><code>Warning</code></td>
     </tr>
+    <tr>
+      <td>Other - Raw spots &lt;&gt; features</td>
+      <td><code>Ignore</code></td>
+    </tr>
     </table>
     

branches/2.13-stable/src/test/net/sf/basedb/test/roles/AnalysisTest.java

@@ -87 +87 @@
       options.setSeverity(Validator.MISSING_HARDWARE, Severity.IGNORE);
       options.setSeverity(Validator.MISSING_PROTOCOL, Severity.IGNORE);
+      options.setSeverity(Validator.NONMATCHING_SPOTCOUNT, Severity.IGNORE);
       GenericOverview affyOverview = getExperimentOverview(dc, affyExperiment, 
         activeProject, options, 2);