Ignore:
Timestamp:
Sep 26, 2011, 12:44:15 PM (10 years ago)
Author:
Nicklas Nordborg
Message:

Fixes #1623: Create reporter importer for GTF files

File:
1 edited

Legend:

Unmodified
Added
Removed
  • trunk/src/plugins/core/core-plugins.xml

    r5734 r5759  
    762762  </plugin-definition>
    763763
     764  <plugin-definition id="GtfReporterImporter">
     765    <about>
     766      <name>GTF reporter importer</name>
     767      <description>
     768        Creater reporters and reporter lists from GTF (Gene transfer format)
     769        files. The default configuration is to use the transcript_id value
     770        as the reporter id and name. No other fields are used, but this can
     771        be changed by user configurations. For example, to use the gene_id
     772        instead or to add prefixes to the id values. The importer
     773        builds on the regular reporter importer and performs on-the-fly
     774        transformation of GTF attributes to a completely column-based format.
     775      </description>
     776    </about>
     777    <plugin-class>net.sf.basedb.plugins.gtf.GtfReporterImporter</plugin-class>
     778    <settings>
     779      <property name="everyone-use">1</property>
     780    </settings>
     781  </plugin-definition>
     782
    764783  <!--
    765784  <plugin-definition id="">
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