Changeset 5773 for trunk/config/dist/raw-data-types.xml
- Timestamp:
- Sep 29, 2011, 3:14:56 PM (11 years ago)
- File:
-
- 1 edited
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trunk/config/dist/raw-data-types.xml
r4888 r5773 3536 3536 </intensity-formula> 3537 3537 </raw-data-type> 3538 <raw-data-type 3539 id="cufflinks" 3540 channels="1" 3541 name="Cufflinks" 3542 table="RawDataCufflinks" 3543 description="Cufflinks isoforms/gene-level expression values in FPKM tracking format"> 3544 <property 3545 name="coverage" 3546 title="Coverage" 3547 description="Estimate for the absolute depth of read coverage across the object." 3548 column="coverage" 3549 type="float" 3550 averagemethod="arithmetic_mean" 3551 /> 3552 <property 3553 name="fpkm" 3554 title="FPKM" 3555 description="Fragments Per Kilobase of exon per Million fragments mapped." 3556 column="fpkm" 3557 type="float" 3558 averagemethod="geometric_mean" 3559 /> 3560 <property 3561 name="fpkm_lo" 3562 title="FPKM lo" 3563 description="The lower bound of the 95% confidence interval on the FPKM." 3564 column="fpkm_lo" 3565 type="float" 3566 averagemethod="geometric_mean" 3567 /> 3568 <property 3569 name="fpkm_hi" 3570 title="FPKM hi" 3571 description="The upper bound of the 95% confidence interval on the FPKM." 3572 column="fpkm_hi" 3573 type="float" 3574 averagemethod="geometric_mean" 3575 /> 3576 <property 3577 name="status" 3578 title="Status" 3579 description="Quantification status. Can be one of OK (deconvolution successful), LOWDATA (too complex or shallowly sequenced), HIDATA (too many fragments in locus), or FAIL, when an ill-conditioned covariance matrix or other numerical exception prevents deconvolution." 3580 column="status" 3581 type="string" 3582 length="255" 3583 averagemethod="none" 3584 /> 3585 <intensity-formula 3586 name="fpkm" 3587 title="FPKM" 3588 description="Fragments Per Kilobase of exon per Million fragments mapped." 3589 > 3590 <formula 3591 channel="1" 3592 expression="raw('fpkm')" 3593 /> 3594 </intensity-formula> 3595 3596 </raw-data-type> 3538 3597 </raw-data-types> 3539 3598
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