Changeset 5797

Timestamp:

Oct 11, 2011, 2:55:26 PM (11 years ago)

Author:

Nicklas Nordborg

Message:

References #1590: Documentation cleanup

New and updated screenshots for chapter 16 - Biomaterial LIMS.

Location:

trunk/doc/src/docbook

Files:

• figures/bioplate-tab-1.png (modified) (previous)
• figures/biosample-tab-1.png (modified) (previous)
• figures/biosample-tab-2.png (added)
• figures/biosource-tab-1.png (modified) (previous)
• figures/biowell.png (modified) (previous)
• figures/create_child_plate_1.png (added)
• figures/create_child_plate_2.png (added)
• figures/edit_bioplatetype.png (added)
• figures/edit_tag.png (added)
• figures/extract-tab-1.png (modified) (previous)
• figures/extract-tab-2.png (added)
• figures/move_biomaterials.png (added)
• figures/physicalbioassay-tab-1.png (added)
• figures/physicalbioassay-tab-2.png (added)
• figures/place_on_plate.png (added)
• user/biomaterials.xml (modified) (5 diffs)

trunk/doc/src/docbook/user/biomaterials.xml

@@ -28 +28 @@
   <?dbhtml dir="biomaterials" filename="index.html" ?>
 
-  <title>Biomaterial</title>
-  <sect1 id="biomaterial.introduction">
-    <?dbhtml filename="introduction.html" ?>
-    <title>Introduction</title>
+  <title>Biomaterial LIMS</title>
+
     <para>
       The generic term biomaterial refers to any biological material used in an experiment.
@@ -71 +69 @@
       expected that users will follow the natural path of the laboratory workflow.
     </para>
-    <tip>
-      <para>
-        It is highly recommended that you have read
-        <xref linkend="webclient.items" />
-        before continuing with this chapter.
-      </para>
-    </tip>
-  </sect1>
+
   
   <sect1 id="biomaterials.biosources">
@@ -1041 +1032 @@
                     specific biomaterial type or not. This property can only
                     be set for new bioplate types.
+                  </para>
+                </listitem>
+              </varlistentry>
+              <varlistentry>              
+                <term><guilabel>Biomaterial subtype</guilabel></term>
+                <listitem>
+                  <para>
+                    If a specific biomaterial type has been selected
+                    it is also possible to further restrict the use
+                    of the bioplate to a certain biomaterial subtype.
+                    The restriction is not enforced by the core but is mainly used
+                    by the gui to provide smart filters in selection
+                    lists, in the bioplate event wizards, etc.
                   </para>
                 </listitem>
@@ -1215 +1219 @@
                   This column contains the biomaterial that should be placed on the plate.
                   When a destination plate has been selected, it is displayed as a grid to
-                  the right. To place a biomaterial either use the <guibutton>Plate by row</guibutton>
+                  the right. To place a biomaterial either use the <guibutton>Place by row</guibutton>
                   or <guibutton>Place by column</guibutton> buttons, or select an item in this
                   list. When an item has been selected, click on the destination well on the
@@ -1749 +1753 @@
                 in different positions can use the same tag.
                 The default value is 1, but some platforms, for example
-                Illumina BeadArrays, has slides with 6 or 8 positions. 
+                Illumina BeadArrays, has slides with 6 or 8 positions
+                and sequencing flow cells have 8 lanes.
               </para>
             </listitem>