Changeset 6434

Timestamp:

Mar 14, 2014, 9:30:20 AM (9 years ago)

Author:

Nicklas Nordborg

Message:

Fixes #1797: Deprecate web services

Location:

trunk

Files:

• doc/src/docbook/appendix/update_warnings.xml (modified) (1 diff)
• doc/src/docbook/developer/webservices.xml (modified) (1 diff)
• src/core/net/sf/basedb/core/AnnotatedItem.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/AnnotationType.java (modified) (3 diffs)
• src/core/net/sf/basedb/core/ArrayDesign.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/BasicItem.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/BioAssaySet.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/CommonItem.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/DataFileType.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/Experiment.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/ExtendedProperty.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/File.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/FileSetMember.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/OwnedItem.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/Project.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/RawBioAssay.java (modified) (3 diffs)
• src/core/net/sf/basedb/core/ReporterList.java (modified) (2 diffs)
• src/core/net/sf/basedb/core/SharedItem.java (modified) (2 diffs)
• src/info/net/sf/basedb/info/AnnotatedItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/AnnotationInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/AnnotationTypeInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ArrayDesignInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/BasicItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/BioAssaySetInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/CommonItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/DataFileTypeInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ExperimentInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ExtendedPropertyInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/FileInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/FileSetMemberInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/NameableInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/OwnedItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ProjectInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/QueryOptions.java (modified) (1 diff)
• src/info/net/sf/basedb/info/QueryParameter.java (modified) (1 diff)
• src/info/net/sf/basedb/info/RawBioAssayInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ReporterListInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/SharedItemInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/ToTransferable.java (modified) (1 diff)
• src/info/net/sf/basedb/info/Transferable.java (modified) (1 diff)
• src/info/net/sf/basedb/info/VersionInfo.java (modified) (1 diff)
• src/info/net/sf/basedb/info/package.html (modified) (1 diff)
• src/test/TestWebservices.java (deleted)
• src/webservices/client/java/net/sf/basedb/ws/client/AbstractRPCClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/AnnotationTypeClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ArrayDesignClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/BioAssaySetClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ConfigurableServiceFactory.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ExperimentClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/Factories.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/FileClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ProjectClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/RawBioAssayClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ReporterClient.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/ServiceFactory.java (modified) (1 diff)
• src/webservices/client/java/net/sf/basedb/ws/client/SessionClient.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/AbstractRPCService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/AnnotationTypeService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ArrayDesignService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/BaseFileDataSource.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/BioAssaySetService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ExperimentService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/FileService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ProjectService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/RawBioAssayService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ReporterService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/ServicesUtil.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/SessionService.java (modified) (1 diff)
• src/webservices/server/net/sf/basedb/ws/server/TempFileDataSource.java (modified) (1 diff)

trunk/doc/src/docbook/appendix/update_warnings.xml

@@ -67 +67 @@
       Servers with Tomcat 6 or older should be updated to Tomcat 7 before installing BASE 3.3.
     </para>
+    
+    <bridgehead>Web services support has been deprecated</bridgehead>
+    <para>
+      The current implementation is most likely not very useful and has limited
+      support for accessing information in BASE. Therefore it has been decided to
+      remove the web services support in BASE 3.4. If anyone require web services
+      support or similar we recommend using the BASE extensions mechanism to implement
+      exactly what is needed for that project and we also beleive that a simplier
+      API such as JSON is preferable.
+    </para>
 
   </sect1>

trunk/doc/src/docbook/developer/webservices.xml

@@ -35 +35 @@
     new one.
   </para>
+  
+  <important>
+    <title>Web services support has been deprecated in BASE 3.3</title>
+    <para>
+      The current implementation is most likely not very useful and has limited
+      support for accessing information in BASE. Therefore it has been decided to
+      remove the web services support in BASE 3.4. If anyone require web services
+      support or similar we recommend using the BASE extensions mechanism to implement
+      exactly what is needed for that project and we also beleive that a simplier
+      API such as JSON is preferable.
+    </para>
+  </important>
 
   <para>

trunk/src/core/net/sf/basedb/core/AnnotatedItem.java

@@ -38 +38 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public abstract class AnnotatedItem<D extends AnnotatedData>
   extends CommonItem<D>
@@ -97 +98 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   AnnotatedItemInfo toTransferable(AnnotatedItemInfo info)
   {

trunk/src/core/net/sf/basedb/core/AnnotationType.java

@@ -29 +29 @@
 import net.sf.basedb.core.data.QuantityData;
 import net.sf.basedb.core.data.UnitData;
-
 import net.sf.basedb.core.query.Restrictions;
 import net.sf.basedb.core.query.Expressions;
@@ -60 +59 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class AnnotationType
   extends CommonItem<AnnotationTypeData>
@@ -284 +284 @@
     return using;
   }
-  
+  /**
+    @deprecated In 3.3, no replacement
+   */
+  @Deprecated
   @Override
   public AnnotationTypeInfo toTransferable(AnnotationTypeInfo info)

trunk/src/core/net/sf/basedb/core/ArrayDesign.java

@@ -60 +60 @@
   @version 2.0
 */
+@SuppressWarnings("deprecation")
 public class ArrayDesign 
   extends AnnotatedItem<ArrayDesignData>
@@ -851 +852 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   @Override
   public ArrayDesignInfo toTransferable(ArrayDesignInfo info)

trunk/src/core/net/sf/basedb/core/BasicItem.java

@@ -39 +39 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public abstract class BasicItem<D extends BasicData>
   implements Identifiable
@@ -182 +183 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   BasicItemInfo toTransferable(BasicItemInfo info)
   {

trunk/src/core/net/sf/basedb/core/BioAssaySet.java

@@ -67 +67 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class BioAssaySet
   extends ChildItem<BioAssaySetData>
@@ -430 +431 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   @Override
   public BioAssaySetInfo toTransferable(BioAssaySetInfo info)

trunk/src/core/net/sf/basedb/core/CommonItem.java

@@ -31 +31 @@
   @version 2.0
 */
+@SuppressWarnings("deprecation")
 public abstract class CommonItem<D extends CommonData>
   extends SharedItem<D>
@@ -89 +90 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   CommonItemInfo toTransferable(CommonItemInfo info)
   {

trunk/src/core/net/sf/basedb/core/DataFileType.java

@@ -44 +44 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class DataFileType
   extends BasicItem<DataFileTypeData>
@@ -483 +484 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   @Override
   public DataFileTypeInfo toTransferable(DataFileTypeInfo info)

trunk/src/core/net/sf/basedb/core/Experiment.java

@@ -51 +51 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class Experiment
   extends AnnotatedItem<ExperimentData>
@@ -350 +351 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   @Override
   public ExperimentInfo toTransferable(ExperimentInfo info)

trunk/src/core/net/sf/basedb/core/ExtendedProperty.java

@@ -40 +40 @@
   @version 2.0
 */
+@SuppressWarnings("deprecation")
 public class ExtendedProperty
   implements ToTransferable<ExtendedPropertyInfo>
@@ -309 +310 @@
 
   @Override
+  @Deprecated
   public ExtendedPropertyInfo toTransferable(ExtendedPropertyInfo info)
   {

trunk/src/core/net/sf/basedb/core/File.java

@@ -79 +79 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class File
   extends CommonItem<FileData>
@@ -712 +713 @@
   /**
     @since 3.0
-  */
+    @deprecated In 3.3, no replacement
+   */
+  @Deprecated
   @Override
   public FileInfo toTransferable(FileInfo info)

trunk/src/core/net/sf/basedb/core/FileSetMember.java

@@ -38 +38 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class FileSetMember
   extends BasicItem<FileSetMemberData>
@@ -174 +175 @@
   /**
     @since 3.0
-  */
+    @deprecated In 3.3, no replacement
+   */
+  @Deprecated
   @Override
   public FileSetMemberInfo toTransferable(FileSetMemberInfo info)

trunk/src/core/net/sf/basedb/core/OwnedItem.java

@@ -39 +39 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public abstract class OwnedItem<D extends OwnedData>
   extends BasicItem<D>
@@ -125 +126 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   OwnedItemInfo toTransferable(OwnedItemInfo info)
   {

trunk/src/core/net/sf/basedb/core/Project.java

@@ -86 +86 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class Project
   extends OwnedItem<ProjectData>
@@ -1051 +1052 @@
   }
   
+  /**
+    @deprecated In 3.3, no replacement
+   */
+  @Deprecated
   @Override
   public ProjectInfo toTransferable(ProjectInfo info)

trunk/src/core/net/sf/basedb/core/RawBioAssay.java

@@ -32 +32 @@
 import net.sf.basedb.core.data.SoftwareData;
 import net.sf.basedb.core.data.SpotImagesData;
-
 import net.sf.basedb.core.query.Restrictions;
 import net.sf.basedb.core.query.Hql;
@@ -67 +66 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class RawBioAssay 
   extends AnnotatedItem<RawBioAssayData>
@@ -454 +454 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   @Override
   public RawBioAssayInfo toTransferable(RawBioAssayInfo info)

trunk/src/core/net/sf/basedb/core/ReporterList.java

@@ -47 +47 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public class ReporterList
   extends CommonItem<ReporterListData>
@@ -787 +788 @@
     return query;
   }
-
+  /**
+    @deprecated In 3.3, no replacement
+   */
+  @Deprecated
   @Override
   public ReporterListInfo toTransferable(ReporterListInfo info)

trunk/src/core/net/sf/basedb/core/SharedItem.java

@@ -39 +39 @@
   @base.modified $Date$
 */
+@SuppressWarnings("deprecation")
 public abstract class SharedItem<D extends SharedData>
   extends OwnedItem<D>
@@ -135 +136 @@
   /**
     @since 2.5
+    @deprecated In 3.3, no replacement
    */
+  @Deprecated
   SharedItemInfo toTransferable(SharedItemInfo info)
   {

trunk/src/info/net/sf/basedb/info/AnnotatedItemInfo.java

@@ -25 +25 @@
     @author Martin
     @version 2.5
-  
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public abstract class AnnotatedItemInfo 
   extends CommonItemInfo

trunk/src/info/net/sf/basedb/info/AnnotationInfo.java

@@ -30 +30 @@
     @author Nicklas
     @version 2.5  
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public class AnnotationInfo
   implements Serializable, Transferable

trunk/src/info/net/sf/basedb/info/AnnotationTypeInfo.java

@@ -32 +32 @@
     @author Nicklas
     @version 2.5  
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public class AnnotationTypeInfo 
   extends CommonItemInfo 

trunk/src/info/net/sf/basedb/info/ArrayDesignInfo.java

@@ -32 +32 @@
     @author Martin
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ArrayDesignInfo 
   extends AnnotatedItemInfo

trunk/src/info/net/sf/basedb/info/BasicItemInfo.java

@@ -30 +30 @@
     @author Martin
     @version 2.5
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public abstract class BasicItemInfo
   implements Transferable

trunk/src/info/net/sf/basedb/info/BioAssaySetInfo.java

@@ -32 +32 @@
     @author Martin
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class BioAssaySetInfo 
   extends BasicItemInfo

trunk/src/info/net/sf/basedb/info/CommonItemInfo.java

@@ -25 +25 @@
     @author Martin
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public abstract class CommonItemInfo 
   extends SharedItemInfo

trunk/src/info/net/sf/basedb/info/DataFileTypeInfo.java

@@ -33 +33 @@
     @version 2.5
   
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class DataFileTypeInfo 
   extends BasicItemInfo

trunk/src/info/net/sf/basedb/info/ExperimentInfo.java

@@ -35 +35 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ExperimentInfo 
   extends CommonItemInfo

trunk/src/info/net/sf/basedb/info/ExtendedPropertyInfo.java

@@ -29 +29 @@
     @author Martin
     @since 2.5  
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ExtendedPropertyInfo 
   implements Serializable, Transferable

trunk/src/info/net/sf/basedb/info/FileInfo.java

@@ -31 +31 @@
     @author Nicklas
     @since 3.0
-  
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class FileInfo 
   extends CommonItemInfo

trunk/src/info/net/sf/basedb/info/FileSetMemberInfo.java

@@ -32 +32 @@
     @author Nicklas
     @since 3.0
-  
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class FileSetMemberInfo 
   extends BasicItemInfo

trunk/src/info/net/sf/basedb/info/NameableInfo.java

@@ -25 +25 @@
     @author Martin
     @version 2.5
-  
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public interface NameableInfo
 {

trunk/src/info/net/sf/basedb/info/OwnedItemInfo.java

@@ -27 +27 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public abstract class OwnedItemInfo 
   extends BasicItemInfo

trunk/src/info/net/sf/basedb/info/ProjectInfo.java

@@ -32 +32 @@
     @author Martin
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ProjectInfo 
   extends OwnedItemInfo

trunk/src/info/net/sf/basedb/info/QueryOptions.java

@@ -38 +38 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class QueryOptions
   implements Transferable

trunk/src/info/net/sf/basedb/info/QueryParameter.java

@@ -31 +31 @@
   @version 2.5
   @base.modified $Date$
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public class QueryParameter
 {

trunk/src/info/net/sf/basedb/info/RawBioAssayInfo.java

@@ -32 +32 @@
     @author Martin, Nicklas
     @version 2.5  
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public class RawBioAssayInfo 
   extends AnnotatedItemInfo 

trunk/src/info/net/sf/basedb/info/ReporterListInfo.java

@@ -29 +29 @@
     @author Martin
   @since 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ReporterListInfo 
   extends CommonItemInfo

trunk/src/info/net/sf/basedb/info/SharedItemInfo.java

@@ -25 +25 @@
     @author Martin
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public abstract class SharedItemInfo 
   extends OwnedItemInfo

trunk/src/info/net/sf/basedb/info/ToTransferable.java

@@ -31 +31 @@
   @param <T> A kind of object that implements {@link net.sf.basedb.info.ToTransferable} 
   @base.modified $Date$
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public interface ToTransferable<T extends Transferable>
 {

trunk/src/info/net/sf/basedb/info/Transferable.java

@@ -37 +37 @@
   @version 2.5
   @base.modified $Date$
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public interface Transferable
 {}

trunk/src/info/net/sf/basedb/info/VersionInfo.java

@@ -29 +29 @@
     @author Nicklas
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class VersionInfo
   implements Serializable, Transferable

trunk/src/info/net/sf/basedb/info/package.html

@@ -21 +21 @@
 -->
 <body>
+<p>
+  All classes in this package has been deprecated as of BASE 3.3.
+  Complete removal is scheduled for BASE 3.4
+</p>
 <p>
   This package contains pure data-holder classes which are used

trunk/src/webservices/client/java/net/sf/basedb/ws/client/AbstractRPCClient.java

@@ -41 +41 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public abstract class AbstractRPCClient 
 {

trunk/src/webservices/client/java/net/sf/basedb/ws/client/AnnotationTypeClient.java

@@ -32 +32 @@
     @author Nicklas
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class AnnotationTypeClient 
   extends AbstractRPCClient 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ArrayDesignClient.java

@@ -41 +41 @@
     @author Martin
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ArrayDesignClient 
   extends AbstractRPCClient

trunk/src/webservices/client/java/net/sf/basedb/ws/client/BioAssaySetClient.java

@@ -39 +39 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class BioAssaySetClient 
   extends AbstractRPCClient

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ConfigurableServiceFactory.java

@@ -34 +34 @@
   @version 2.8
   @base.modified $Date$
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ConfigurableServiceFactory
   implements ServiceFactory

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ExperimentClient.java

@@ -36 +36 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ExperimentClient 
   extends AbstractRPCClient 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/Factories.java

@@ -28 +28 @@
   @version 2.8
   @base.modified $Date$
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public class Factories
 {

trunk/src/webservices/client/java/net/sf/basedb/ws/client/FileClient.java

@@ -37 +37 @@
     @author Nicklas
     @since 3.0
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class FileClient 
   extends AbstractRPCClient 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ProjectClient.java

@@ -32 +32 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ProjectClient 
   extends AbstractRPCClient 

trunk/src/webservices/client/java/net/sf/basedb/ws/client/RawBioAssayClient.java

@@ -43 +43 @@
     @author Martin
     @version 2.5
-  
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class RawBioAssayClient 
   extends AbstractRPCClient

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ReporterClient.java

@@ -37 +37 @@
     @author Martin
     @since 2.5
-  
+    @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ReporterClient 
   extends AbstractRPCClient

trunk/src/webservices/client/java/net/sf/basedb/ws/client/ServiceFactory.java

@@ -50 +50 @@
   @version 2.8
   @base.modified $Date$
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public interface ServiceFactory
 {

trunk/src/webservices/client/java/net/sf/basedb/ws/client/SessionClient.java

@@ -31 +31 @@
     @author Nicklas, Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class SessionClient 
   extends AbstractRPCClient

trunk/src/webservices/server/net/sf/basedb/ws/server/AbstractRPCService.java

@@ -41 +41 @@
     @author Nicklas, Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public abstract class AbstractRPCService 
 {

trunk/src/webservices/server/net/sf/basedb/ws/server/AnnotationTypeService.java

@@ -36 +36 @@
     @author Nicklas
     @version 2.5
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public class AnnotationTypeService
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/ArrayDesignService.java

@@ -45 +45 @@
     @author Martin
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ArrayDesignService 
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/BaseFileDataSource.java

@@ -34 +34 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class BaseFileDataSource 
   implements DataSource

trunk/src/webservices/server/net/sf/basedb/ws/server/BioAssaySetService.java

@@ -41 +41 @@
     @author Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class BioAssaySetService 
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/ExperimentService.java

@@ -44 +44 @@
     @author Nicklas, Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ExperimentService
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/FileService.java

@@ -35 +35 @@
     @author Nicklas
     @since 3.0
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class FileService
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/ProjectService.java

@@ -35 +35 @@
     @author Nicklas, Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ProjectService
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/RawBioAssayService.java

@@ -44 +44 @@
     @author Martin
   @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class RawBioAssayService 
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/ReporterService.java

@@ -64 +64 @@
     @author Martin
   @since 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ReporterService 
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/ServicesUtil.java

@@ -50 +50 @@
     @author Martin, Nicklas
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class ServicesUtil
 {

trunk/src/webservices/server/net/sf/basedb/ws/server/SessionService.java

@@ -32 +32 @@
     @author Nicklas, Martin
     @version 2.5
+  @deprecated In 3.3, no replacement
  */
+@Deprecated
 public class SessionService
   extends AbstractRPCService

trunk/src/webservices/server/net/sf/basedb/ws/server/TempFileDataSource.java

@@ -42 +42 @@
   @version 2.5
   @base.modified $Date$
-*/
+  @deprecated In 3.3, no replacement
+ */
+@Deprecated
 public class TempFileDataSource
   extends FileDataSource