Changeset 7121 for trunk/src/core/common-queries.xml

Timestamp:

Apr 19, 2016, 8:56:43 AM (7 years ago)

Author:

Nicklas Nordborg

Message:

References #2000: Batch API for annotation handling

First version of the new AnnotationBatcher implementation. It should have support for creating, updating and deleting annotation values.

It lacks a lot functionality:

• It doesn't check annotation values (eg. if a String is a String, if a values is allowed by the an enumerated annotation, etc.)
• It doesn't handle units
• Changes are not recorded in the change log

The AnnotationFlatFileImporter has been modified to use the batcher. All possible options for updating are supported (eg. merge).

File:

• trunk/src/core/common-queries.xml (modified) (1 diff)

trunk/src/core/common-queries.xml

@@ -3582 +3582 @@
   </query>
 
+  <query id="AB_LOAD_ANNOTATION_INFO" type="SQL">
+    <sql>
+      SELECT [annotationtype_id], [id], [version], [unit_id], [value_id], [last_update]
+      FROM [Annotations] 
+      WHERE [annotationset_id] = :annotationSet AND [source] = 0
+    </sql>
+    <description>
+      SQL query for loading current (primary) annotations for 
+      a given item. 
+      Used by the AnnotationBatcher as a SQL query via Hibernate.
+    </description>
+  </query>
+
+  <query id="AB_LOAD_ANNOTATION_VALUES" type="SQL">
+    <sql>
+      SELECT [id], [value]
+      FROM [{1}] 
+      WHERE [id] IN (:listOfIds)
+    </sql>
+    <description>
+      SQL query for loading current annotation values
+      for a given list of annotation value IDs.
+      Used by the AnnotationBatcher as a SQL query via Hibernate.
+    </description>
+  </query>
+
+  <query id="AB_INSERT_INTO_PARAMETERVALUES" type="SQL">
+    <sql>
+      INSERT INTO [ParameterValues] ([id], [discriminator], [version]) 
+      VALUES (nextval('hibernate_sequence'), ?, 0)
+    </sql>
+    <description>
+      SQL query for inserting rows into the ParameterValues table.
+      The primary key (id) must be auto-generated.
+      Parameters: discriminator
+    </description>
+  </query>
+
+  <query id="AB_INSERT_INTO_ANNOTATIONS" type="SQL">
+    <sql>
+      INSERT INTO [Annotations] ([id], [version], [annotationset_id], [annotationtype_id], [unit_id], [value_id], [last_update], [source]) 
+      VALUES (nextval('hibernate_sequence'), 0, ?, ?, ?, ?, ?, 0)
+    </sql>
+    <description>
+      SQL query for inserting rows into the Annotations table.
+      The primary key (id) must be auto-generated.
+      Parameters: annotationset_id, annotationtype_id, unit_id, value_id, last_updated
+    </description>
+  </query>
+
+  <query id="AB_UPDATE_ANNOTATIONS" type="SQL">
+    <sql>
+      UPDATE [Annotations] 
+      SET [version] = ?, [unit_id] = ?, [last_update] = ?
+      WHERE [id] = ? AND [version] = ?
+    </sql>
+    <description>
+      SQL query for updating rows into the Annotations table.
+      Parameters: version (new), unit_id, last_updated, id, version (old)
+    </description>
+  </query>
+
+  <query id="AB_INSERT_INTO_ANNOTATIONSETS" type="SQL">
+    <sql>
+      INSERT INTO [AnnotationSets] ([id], [version], [item_type], [item_id]) 
+      VALUES (nextval('hibernate_sequence'), 0, {1}, ?)
+    </sql>
+    <description>
+      SQL query for inserting rows into the AnnotationSets table.
+      The primary key (id) must be auto-generated.
+      Parameters: item_id
+    </description>
+  </query>
+  
+  <query id="AB_UPDATE_ITEMTABLE" type="SQL">
+    <sql>
+      UPDATE [{1}] 
+      SET [annotationset_id] = ?
+      WHERE [id] = ?
+    </sql>
+    <description>
+      SQL query for updating the annotationset_id column in any
+      table it exists in.
+      Parameters: annotationset_id, item_id
+    </description>
+  </query>
+
+  <query id="AB_NULLIFY_CLONED_ANNOTATIONS" type="SQL">
+    <sql>
+      UPDATE [Annotations] 
+      SET [inherited_id] = null 
+      WHERE [inherited_id] = ? and [source] = 2
+    </sql>
+    <description>
+      SQL query for setting the 'inherited_id' column to null
+      for cloned annotations that reference the annotation that
+      is about to be deleted.
+      Parameters: inherited_id
+    </description>
+  </query>
+
+  <query id="AB_DELETE_INHERITED_ANNOTATIONS" type="SQL">
+    <sql>
+      DELETE FROM [Annotations] 
+      WHERE [inherited_id] = ? and [source] = 1
+    </sql>
+    <description>
+      SQL query for deleting inherited annotations that reference 
+      the annotation that is about to be deleted.
+      Parameters: inherited_id
+    </description>
+  </query>
+
+  <query id="AB_DELETE_FROM_ANNOTATIONS" type="SQL">
+    <sql>
+      DELETE FROM [Annotations] 
+      WHERE [id] = ?
+    </sql>
+    <description>
+      SQL query for deleting an annotation with a given id.
+      Used by the AnnotationBatcher as a PreparedStatement.
+      Parameters: id
+    </description>
+  </query>
+
+  <query id="AB_DELETE_FROM_PARAMETERVALUES" type="SQL">
+    <sql>
+      DELETE FROM [ParameterValues] WHERE [id] = ?
+    </sql>
+    <description>
+      SQL query for deleting a parameter value with a given id.
+      Used by the AnnotationBatcher as a PreparedStatement.
+    </description>
+  </query>
+
+  <query id="AB_DELETE_FROM_VALUES" type="SQL">
+    <sql>
+      DELETE FROM [{1}] WHERE [id] = ?
+    </sql>
+    <description>
+      SQL query for deleting all actual annotation values with a given id.
+      The {1} parameter is the table the value are stored in, eg. StringValues,
+      IntegerValues, FloatValues, etc.
+      Used by the AnnotationBatcher as a PreparedStatement.
+    </description>
+  </query>
+  
+  <query id="AB_INSERT_INTO_VALUES" type="SQL">
+    <sql>
+      INSERT INTO [{1}] ([id], [value]) VALUES (?, ?)
+    </sql>
+    <description>
+      SQL query for inserting annotation values in their respective 
+      table (eg. StringValues, IntegerValues, FloatValues, etc.).
+      Used by the AnnotationBatcher as a PreparedStatement.
+    </description>
+  </query>
   
 </predefined-queries>