# # ChangeLog for trunk/config # # Generated by Trac 1.2.3 # May 17, 2022, 5:52:12 AM Fri, 01 Dec 2006 14:00:14 GMT Johan Enell [2992] * trunk/config/dist/mysql-migration-queries.sql (modified) * trunk/data/plugin_configfile.xml (modified) * trunk/doc/installation.html (modified) * trunk/src/clients/migrate/net/sf/basedb/clients/migrate/AnnotationTypeTransfer.java (modified) * trunk/src/clients/migrate/net/sf/basedb/clients/migrate/ArrayBlockTransfer.java (modified) * trunk/src/clients/migrate/net/sf/basedb/clients/migrate/Migrater.java (modified) * trunk/src/clients/migrate/net/sf/basedb/clients/migrate/RawBioAssayDataTransfer.java (modified) * trunk/src/clients/migrate/net/sf/basedb/clients/migrate/RawBioAssayTransfer.java (modified) * trunk/src/clients/migrate/net/sf/basedb/clients/migrate/UploadFileTransfer.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/Page.java (modified) * trunk/src/core/net/sf/basedb/core/Annotation.java (modified) * trunk/src/core/net/sf/basedb/core/AnnotationSet.java (modified) * trunk/src/core/net/sf/basedb/core/Application.java (modified) * trunk/src/core/net/sf/basedb/core/BooleanParameterType.java (modified) * trunk/src/core/net/sf/basedb/core/Config.java (modified) * trunk/src/core/net/sf/basedb/core/PluginParameter.java (modified) * trunk/src/core/net/sf/basedb/core/dbengine/TableInfo.java (modified) * trunk/src/core/net/sf/basedb/core/dtd/plugin-configuration-file.dtd (modified) * trunk/src/core/net/sf/basedb/util/BioAssaySetUtil.java (modified) * trunk/src/core/net/sf/basedb/util/Enumeration.java (modified) * trunk/src/core/net/sf/basedb/util/jep/PositionFunction.java (copied) * trunk/src/core/net/sf/basedb/util/parser/FlatFileParser.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/AbstractFlatFileImporter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/Base1PluginExecuter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/BioAssaySetExporter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/PlateFlatFileImporter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/PluginConfigurationExporter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/PluginConfigurationImporter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/PrintMapFlatFileImporter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/RawDataFlatFileImporter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/ReporterFlatFileImporter.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/ReporterMapFlatFileImporter.java (modified) * trunk/src/test/TestAnalyzePluginUtil.java (modified) * trunk/src/test/TestArrayDesign.java (modified) * trunk/src/test/TestFlatFileParser.java (modified) * trunk/src/test/TestParameterType.java (modified) * trunk/src/test/TestPlate.java (modified) * trunk/src/test/TestRawBioAssay.java (modified) * trunk/src/test/TestReporter.java (modified) * trunk/www/admin/pluginconfigurations/index.jsp (modified) * trunk/www/biomaterials/extracts/edit_extract.jsp (modified) * trunk/www/biomaterials/extracts/view_extract.jsp (modified) * trunk/www/biomaterials/labeledextracts/edit_labeledextract.jsp (modified) * trunk/www/biomaterials/labeledextracts/view_labeledextract.jsp (modified) * trunk/www/biomaterials/samples/edit_sample.jsp (modified) * trunk/www/biomaterials/samples/view_sample.jsp (modified) * trunk/www/common/plugin/configure.jsp (modified) * trunk/www/common/plugin/index.jsp (modified) * trunk/www/common/plugin/parse_file.jsp (modified) * trunk/www/common/plugin/test_with_file.jsp (modified) * trunk/www/exception/exception.jsp (modified) * trunk/www/info/about.jsp (modified) * trunk/www/lims/arrayslides/create_wizard.jsp (modified) * trunk/www/views/hybridizations/edit_hybridization.jsp (modified) Merged log:branches/2.1#2846:2990 trunk. Wed, 29 Nov 2006 07:28:52 GMT Nicklas Nordborg [2971] * trunk/bin (modified) * trunk/config/local (modified) Added svn.ignore Tue, 28 Nov 2006 10:00:05 GMT Nicklas Nordborg [2966] * trunk/bin/set_classpath.bat (modified) * trunk/bin/set_classpath.sh (modified) * trunk/config/dist/base.config (modified) * trunk/doc/3rd-party-components.txt (modified) * trunk/doc/admin/base.config.html (modified) * trunk/lib/dist/jcommon-1.0.0.jar (deleted) * trunk/lib/dist/jcommon-1.0.6.jar (added) * trunk/lib/dist/jfreechart-1.0.1.jar (deleted) * trunk/lib/dist/jfreechart-1.0.3.jar (added) * trunk/lib/dist/log4j-1.2.13.jar (deleted) * trunk/lib/dist/log4j-1.2.14.jar (added) * trunk/lib/dist/mysql-connector-java-3.1.13-bin.jar (deleted) * trunk/lib/dist/mysql-connector-java-5.0.4-bin.jar (added) * trunk/lib/dist/xerces-2.8.0.jar (deleted) * trunk/lib/dist/xerces-2.9.0.jar (added) * trunk/lib/dist/xml-apis.jar (modified) * trunk/src/test/set_classpath.bat (modified) * trunk/src/test/set_classpath.sh (modified) References #440: Update to latest versions of 3rd-party software ... Mon, 27 Nov 2006 11:36:37 GMT Nicklas Nordborg [2959] * trunk/bin (added) * trunk/bin/dbinfo.bat (moved) * trunk/bin/dbinfo.sh (moved) * trunk/bin/dropindexes.bat (moved) * trunk/bin/dropindexes.sh (moved) * trunk/bin/initdb.bat (moved) * trunk/bin/initdb.sh (moved) * trunk/bin/jobagent.bat (moved) * trunk/bin/jobagent.sh (moved) * trunk/bin/migrate_from_1.2.sh (moved) * trunk/bin/set_classpath.bat (moved) * trunk/bin/set_classpath.sh (added) * trunk/bin/updatedb.bat (moved) * trunk/bin/updatedb.sh (moved) * trunk/bin/updateindexes.bat (moved) * trunk/bin/updateindexes.sh (moved) * trunk/build.xml (modified) * trunk/config (added) * trunk/config/dist (added) * trunk/config/dist/base.config (added) * trunk/config/dist/ehcache.xml (added) * trunk/config/dist/extended-properties.xml (added) * trunk/config/dist/hibernate.cfg.xml (added) * trunk/config/dist/jobagent.properties (added) * trunk/config/dist/log4j.properties (added) * trunk/config/dist/migrate.properties (added) * trunk/config/dist/mysql-migration-queries.sql (added) * trunk/config/dist/mysql-queries.xml (added) * trunk/config/dist/postgres-queries.xml (added) * trunk/config/dist/raw-data-types.xml (added) * trunk/config/dist/web.xml (added) * trunk/config/local (added) * trunk/config/local/readme.txt (added) * trunk/data (added) * trunk/data/helptexts.xml (moved) * trunk/data/plugin_configfile.xml (moved) * trunk/doc/admin/extended-properties.html (modified) * trunk/doc/development/build.html (added) * trunk/doc/development/index.html (modified) * trunk/doc/installation.html (modified) * trunk/lib/compile (deleted) * trunk/lib/dist/hibernate3.jar (copied) * trunk/lib/dist/jai_codec.jar (copied) * trunk/lib/dist/jai_core.jar (copied) * trunk/lib/dist/jcommon-1.0.0.jar (copied) * trunk/lib/dist/jdom.jar (copied) * trunk/lib/dist/jep-2.4.0.jar (copied) * trunk/lib/dist/jfreechart-1.0.1.jar (copied) * trunk/lib/dist/log4j-1.2.13.jar (copied) * trunk/lib/dist/mlibwrapper_jai.jar (copied) * trunk/lib/servlet (added) * trunk/lib/servlet/jsp-api.jar (added) * trunk/lib/servlet/servlet-api.jar (added) * trunk/src/base.config.in (deleted) * trunk/src/clients/jobagent/jobagent.properties.in (deleted) * trunk/src/clients/migrate/migrate.properties.in (deleted) * trunk/src/clients/migrate/sql (deleted) * trunk/src/ehcache.xml (deleted) * trunk/src/extended-properties.xml (deleted) * trunk/src/hibernate.cfg.xml (deleted) * trunk/src/install/includes (deleted) * trunk/src/log4j.properties.in (deleted) * trunk/src/mysql-queries.xml (deleted) * trunk/src/postgres-queries.xml (deleted) * trunk/src/raw-data-types.xml (deleted) * trunk/src/test/TestArrayDesign.java (modified) * trunk/src/test/TestExperiment.java (modified) * trunk/src/test/TestFile.java (modified) * trunk/src/test/TestFlatFileParser.java (modified) * trunk/src/test/TestPlateFlatFileImporter.java (modified) * trunk/src/test/TestPrintMapFlatFileImporter.java (modified) * trunk/src/test/TestQuota.java (modified) * trunk/src/test/TestRawBioAssay.java (modified) * trunk/src/test/TestRawDataFlatFileImporter.java (modified) * trunk/src/test/TestReporter.java (modified) * trunk/src/test/TestReporterFlatFileImporter.java (modified) * trunk/src/test/TestReporterList.java (modified) * trunk/src/test/TestReporterMapFlatFileImporter.java (modified) * trunk/src/test/TestSpotImages.java (modified) * trunk/src/test/TestXMLUtil.java (modified) * trunk/src/test/data (added) * trunk/src/test/data/JarPluginManifest.txt (moved) * trunk/src/test/data/extended-properties.dtd (moved) * trunk/src/test/data/extended-properties.xml (moved) * trunk/src/test/data/spots.tif (moved) * trunk/src/test/data/test.parse.genepix.result.gpr (moved) * trunk/src/test/data/test.parse.hskg.plates.txt (moved) * trunk/src/test/data/test.parse.printmap.mwbr (moved) * trunk/src/test/data/test.parse.printmap.tam (moved) * trunk/src/test/data/test.plate96.import.txt (moved) * trunk/src/test/data/test.plugin.base (moved) * trunk/src/test/data/test.rawdata.import.txt (moved) * trunk/src/test/data/test.reporter.import.txt (moved) * trunk/src/test/data/test.reportermap.import.txt (moved) * trunk/src/test/data/test.unpack.zip (moved) * trunk/src/test/data/test.upload.png (moved) * trunk/src/test/data/test.upload.txt (moved) * trunk/src/test/set_classpath.bat (modified) * trunk/src/test/set_classpath.sh (modified) * trunk/src/web.xml.in (deleted) References #412: Fix build.xml to make it more developer-friendly