# # ChangeLog for trunk/doc/src/docbook/overview # # Generated by Trac 1.2.3 # May 20, 2022, 6:56:04 AM Wed, 22 Oct 2014 16:41:55 GMT Nicklas Nordborg [6576] * trunk (modified) * trunk/credits.txt (modified) * trunk/doc/src/docbook/developer/documentation.xml (modified) * trunk/doc/src/docbook/developer/migrate_2_3.xml (modified) * trunk/doc/src/docbook/developer/plugins.xml (modified) * trunk/doc/src/docbook/overview/resources.xml (modified) * trunk/doc/src/docbook/user/webclient.xml (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/WebClientRegisterExtensionsProcessor.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/menu/FixedMenuItemFactory.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/menu/MenuItemBean.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/menu/PermissionMenuItemFactory.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/tabcontrol/FixedTabFactory.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/tabcontrol/IncludeContentTabFactory.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/tabcontrol/TabBean.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/toolbar/ButtonBean.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/extensions/toolbar/FixedButtonFactory.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/Body.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/Button.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/CalendarButton.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/DeprecationLogger.java (copied) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/Head.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/Icon.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/Select.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/StylableTag.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/extensions/Scripts.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/extensions/Stylesheets.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/menu/Menuitem.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/tab/Tab.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/tab/TabControl.java (modified) * trunk/src/clients/web/net/sf/basedb/clients/web/taglib/table/Button.java (modified) * trunk/src/core/net/sf/basedb/core/DbControl.java (modified) * trunk/src/core/net/sf/basedb/core/Job.java (modified) * trunk/src/core/net/sf/basedb/core/Project.java (modified) * trunk/src/core/net/sf/basedb/core/query/CaseExpression.java (modified) * trunk/src/core/net/sf/basedb/core/query/Hql.java (modified) * trunk/src/core/net/sf/basedb/core/query/WhenStatement.java (modified) * trunk/src/core/net/sf/basedb/util/extensions/manager/processor/PluginInstallationProcessor.java (modified) * trunk/src/plugins/core/net/sf/basedb/plugins/RawDataFlatFileImporter.java (modified) * trunk/src/test/TestFile.java (modified) * trunk/src/test/TestFileServer.java (modified) * trunk/src/test/TestItemImporter.java (modified) * trunk/src/test/data/base.onk.lu.se.crt (copied) * trunk/src/test/data/base2.thep.lu.se.crt (deleted) * trunk/src/test/data/test.batchimport.files.txt (modified) * trunk/src/test/data/test.download.base-2.17.2.md5 (deleted) * trunk/src/test/data/test.download.baselogo.png (copied) * trunk/www/ajax.jsp (copied) * trunk/www/biomaterials/extracts/extracts.js (modified) * trunk/www/biomaterials/samples/samples.js (modified) * trunk/www/common/import/select_file.jsp (modified) * trunk/www/common/plugin/configure.jsp (modified) * trunk/www/common/share/share.js (modified) * trunk/www/filemanager/files/files.js (modified) * trunk/www/filemanager/select_file.js (modified) * trunk/www/footnote.js (modified) * trunk/www/footnote.jsp (modified) * trunk/www/include/menu.jsp (modified) * trunk/www/include/scripts/main-2.js (modified) * trunk/www/include/scripts/main.js (modified) * trunk/www/include/scripts/popup.js (modified) * trunk/www/include/scripts/table.js (modified) * trunk/www/login.js (modified) * trunk/www/views/jobs/view_job.jsp (modified) * trunk/www/views/physicalbioassays/bioassays.js (modified) Merged patch release 3.3.2 to the trunk. Wed, 04 Jun 2014 12:41:12 GMT Nicklas Nordborg [6465] * trunk/.classpath (modified) * trunk/build.xml (modified) * trunk/config/dist/axis2.xml (deleted) * trunk/config/dist/web.xml (modified) * trunk/doc/3rd-party-components.txt (modified) * trunk/doc/src/docbook/appendix/update_warnings.xml (modified) * trunk/doc/src/docbook/appendix/web.xml.xml (modified) * trunk/doc/src/docbook/developer/overview.xml (modified) * trunk/doc/src/docbook/developer/webservices.xml (modified) * trunk/doc/src/docbook/overview/features.xml (modified) * trunk/doc/src/docbook/overview/resources.xml (modified) * trunk/lib/webservices (deleted) * trunk/misc (modified) * trunk/src/core/net/sf/basedb/core/AnnotatedItem.java (modified) * trunk/src/core/net/sf/basedb/core/AnnotationType.java (modified) * trunk/src/core/net/sf/basedb/core/ArrayDesign.java (modified) * trunk/src/core/net/sf/basedb/core/BasicItem.java (modified) * trunk/src/core/net/sf/basedb/core/BioAssaySet.java (modified) * trunk/src/core/net/sf/basedb/core/CommonItem.java (modified) * trunk/src/core/net/sf/basedb/core/DataFileType.java (modified) * trunk/src/core/net/sf/basedb/core/DynamicSpotQuery.java (modified) * trunk/src/core/net/sf/basedb/core/Experiment.java (modified) * trunk/src/core/net/sf/basedb/core/ExtendedProperty.java (modified) * trunk/src/core/net/sf/basedb/core/File.java (modified) * trunk/src/core/net/sf/basedb/core/FileSet.java (modified) * trunk/src/core/net/sf/basedb/core/FileSetMember.java (modified) * trunk/src/core/net/sf/basedb/core/ItemSubtype.java (modified) * trunk/src/core/net/sf/basedb/core/Job.java (modified) * trunk/src/core/net/sf/basedb/core/OwnedItem.java (modified) * trunk/src/core/net/sf/basedb/core/PluginDefinition.java (modified) * trunk/src/core/net/sf/basedb/core/Project.java (modified) * trunk/src/core/net/sf/basedb/core/Protocol.java (modified) * trunk/src/core/net/sf/basedb/core/RawBioAssay.java (modified) * trunk/src/core/net/sf/basedb/core/RawDataType.java (modified) * trunk/src/core/net/sf/basedb/core/ReporterList.java (modified) * trunk/src/core/net/sf/basedb/core/SessionControl.java (modified) * trunk/src/core/net/sf/basedb/core/SharedItem.java (modified) * trunk/src/core/net/sf/basedb/util/AnnotationUtil.java (modified) * trunk/src/info (deleted) * trunk/src/webservices/client/java (deleted) * trunk/src/webservices/server (deleted) Fixes #1798: Remove web services support Thu, 10 Nov 2011 08:15:24 GMT Nicklas Nordborg [5864] * trunk (modified) * trunk/credits.txt (modified) * trunk/doc/src/docbook/overview/resources.xml (modified) * trunk/src/core/net/sf/basedb/core/Install.java (modified) * trunk/src/core/net/sf/basedb/core/Update.java (modified) * trunk/src/test/TestFile.java (modified) * trunk/src/test/data/test.download.base-2.15.0.MD5 (deleted) * trunk/src/test/data/test.download.base-2.17.2.md5 (copied) Merged patch release 3.0.1 to the trunk. Tue, 01 Nov 2011 18:02:40 GMT Jari Häkkinen [5846] * trunk/doc/src/docbook/overview/features.xml (modified) Fixes #523. Tue, 01 Nov 2011 16:58:55 GMT Jari Häkkinen [5845] * trunk/doc/src/docbook/overview/features.xml (modified) Addresses #523. Tue, 01 Nov 2011 16:05:58 GMT Jari Häkkinen [5844] * trunk/doc/src/docbook/overview/why_base.xml (modified) Fixes #522. After five years ... Tue, 25 Oct 2011 13:21:15 GMT Jari Häkkinen [5825] * trunk/doc/src/docbook/overview/index.xml (modified) Addresses #522 and #523. Tue, 25 Oct 2011 12:27:48 GMT Jari Häkkinen [5824] * trunk/doc/src/docbook/overview/index.xml (modified) Addresses #522 and #523. Tue, 04 Oct 2011 13:43:16 GMT Nicklas Nordborg [5782] * trunk/build.xml (modified) * trunk/doc/src/docbook/admin/index.xml (modified) * trunk/doc/src/docbook/appendix/base.config.xml (modified) * trunk/doc/src/docbook/appendix/basefile.xml (modified) * trunk/doc/src/docbook/appendix/bfs.xml (modified) * trunk/doc/src/docbook/appendix/coreplugins.xml (modified) * trunk/doc/src/docbook/appendix/extended_properties.xml (modified) * trunk/doc/src/docbook/appendix/fileformats.xml (modified) * trunk/doc/src/docbook/appendix/incompatible.xml (modified) * trunk/doc/src/docbook/appendix/index.xml (modified) * trunk/doc/src/docbook/appendix/jobagent.properties.xml (modified) * trunk/doc/src/docbook/appendix/jobagent.sh.xml (modified) * trunk/doc/src/docbook/appendix/other_config.xml (modified) * trunk/doc/src/docbook/appendix/raw_data_types.xml (modified) * trunk/doc/src/docbook/appendix/update_warnings.xml (modified) * trunk/doc/src/docbook/appendix/web.xml.xml (modified) * trunk/doc/src/docbook/developer/base_api.xml (modified) * trunk/doc/src/docbook/developer/documentation.xml (modified) * trunk/doc/src/docbook/developer/extensions.xml (modified) * trunk/doc/src/docbook/developer/index.xml (modified) * trunk/doc/src/docbook/developer/migrate_2_3.xml (modified) * trunk/doc/src/docbook/developer/overview.xml (modified) * trunk/doc/src/docbook/developer/plugins.xml (moved) * trunk/doc/src/docbook/developer/webservices.xml (modified) * trunk/doc/src/docbook/faq/faqs.xml (modified) * trunk/doc/src/docbook/overview/base_overview.xml (deleted) * trunk/doc/src/docbook/overview/features.xml (modified) * trunk/doc/src/docbook/overview/index.xml (modified) * trunk/doc/src/docbook/overview/resources.xml (modified) * trunk/doc/src/docbook/overview/why_base.xml (modified) * trunk/doc/src/docbook/user/annotations.xml (modified) * trunk/doc/src/docbook/user/biomaterials.xml (modified) * trunk/doc/src/docbook/user/experiments_analysis.xml (modified) * trunk/doc/src/docbook/user/file_system.xml (modified) * trunk/doc/src/docbook/user/index.xml (modified) * trunk/doc/src/docbook/user/overview.xml (modified) * trunk/doc/src/docbook/user/project_permission.xml (modified) * trunk/doc/src/docbook/user/webclient.xml (modified) References #1590: Documentation cleanup Restructured documentation ... Thu, 15 Sep 2011 06:53:11 GMT Nicklas Nordborg [5738] * trunk/build.xml (modified) * trunk/doc/src/docbook/admin (moved) * trunk/doc/src/docbook/admin/accounts.xml (copied) * trunk/doc/src/docbook/admin/index.xml (modified) * trunk/doc/src/docbook/admin/installation.xml (copied) * trunk/doc/src/docbook/admindoc/installation_upgrade.xml (deleted) * trunk/doc/src/docbook/admin/plugins.xml (modified) * trunk/doc/src/docbook/admindoc/user_administration.xml (deleted) * trunk/doc/src/docbook/appendix/base.config.xml (modified) * trunk/doc/src/docbook/appendix/update_warnings.xml (modified) * trunk/doc/src/docbook/developer (moved) * trunk/doc/src/docbook/developer/api_overview.xml (modified) * trunk/doc/src/docbook/developer/base_overview.xml (modified) * trunk/doc/src/docbook/developer/core_ref.xml (modified) * trunk/doc/src/docbook/developer/documentation.xml (modified) * trunk/doc/src/docbook/developer/extensions.xml (modified) * trunk/doc/src/docbook/developer/index.xml (modified) * trunk/doc/src/docbook/developer/migrate_2_3.xml (modified) * trunk/doc/src/docbook/developer/plugin_developer.xml (modified) * trunk/doc/src/docbook/developer/webservices.xml (modified) * trunk/doc/src/docbook/faq/faqs.xml (modified) * trunk/doc/src/docbook/index.xml (modified) * trunk/doc/src/docbook/overview (moved) * trunk/doc/src/docbook/overview/base_overview.xml (modified) * trunk/doc/src/docbook/overview/features.xml (modified) * trunk/doc/src/docbook/overview/index.xml (modified) * trunk/doc/src/docbook/overview/resources.xml (modified) * trunk/doc/src/docbook/overview/why_base.xml (modified) * trunk/doc/src/docbook/user (moved) * trunk/doc/src/docbook/user/annotations.xml (modified) * trunk/doc/src/docbook/user/array_lims.xml (modified) * trunk/doc/src/docbook/user/biomaterials.xml (modified) * trunk/doc/src/docbook/user/experiments_analysis.xml (modified) * trunk/doc/src/docbook/user/export_data.xml (modified) * trunk/doc/src/docbook/user/file_system.xml (modified) * trunk/doc/src/docbook/user/import_data.xml (modified) * trunk/doc/src/docbook/user/index.xml (modified) * trunk/doc/src/docbook/user/jobs.xml (modified) * trunk/doc/src/docbook/user/overview.xml (modified) * trunk/doc/src/docbook/user/platforms.xml (modified) * trunk/doc/src/docbook/user/project_permission.xml (modified) * trunk/doc/src/docbook/user/protocols.xml (modified) * trunk/doc/src/docbook/user/reporters.xml (modified) * trunk/doc/src/docbook/user/subtypes.xml (modified) * trunk/doc/src/docbook/user/wares.xml (modified) * trunk/doc/src/docbook/user/webclient.xml (modified) References #1590: Documentation cleanup Re-orgarnized ... Wed, 29 Jul 2009 11:27:15 GMT Martin Svensson [5036] * trunk/doc/src/docbook/overviewdoc/resources.xml (modified) Fixes #1354 Remove section about IRC-channel.