source: trunk/doc

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Diff Rev Age Author Log Message
(edit) @3117   16 years Jari Häkkinen Changed link to BASE (MeV) hacks site.
(edit) @3114   16 years Jari Häkkinen Cleaning.
(edit) @3113   16 years Jari Häkkinen Updated installation document.
(edit) @3111   16 years Jari Häkkinen Added MeV to the list of 3rd party components and to the tools list.
(edit) @3092   16 years Jari Häkkinen Added another affymetrix reporter importer configuration.
(edit) @3090   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @3085   16 years Nicklas Nordborg Fixes #440: Update to latest versions of 3rd-party software
(edit) @3083   16 years Martin Svensson Correct a parameter in genepix-dyeswap configuration for the …
(edit) @3081   16 years Martin Svensson Remarks added for each configuration in the list.
(edit) @3070   16 years Jari Häkkinen Added core plugins link to admin docs list.
(edit) @3069   16 years Jari Häkkinen Added remark column and increased page width.
(edit) @3067   16 years Jari Häkkinen Remove CR characters from files and fixing svn:eol-style property.
(edit) @3066   16 years Jari Häkkinen Removed parantheses in filenames. Trac cannot handle these in the …
(edit) @3065   16 years Jari Häkkinen Added copyright statement.
(edit) @3064   16 years Jari Häkkinen Added Affymetrix reporter (probeset) importer configuration.
(edit) @3058   16 years Martin Svensson Added one more configuration file for download in the plugin list. …
(edit) @3056   16 years Jari Häkkinen Changed requirements on tomcat to 5.5.16 or later.
(edit) @3054   16 years Martin Svensson Moved the core plugin list to administration documentation
(edit) @3053   16 years Martin Svensson Removed the coreplugins.html from the doc/user/ catalog.
(edit) @3050   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @3048   16 years Martin Svensson Extended the plugin-list. All core plugins are now in the list. Left …
(edit) @3047   16 years Martin Svensson First version of a list with all core plugins in BASE2
(edit) @3045   16 years Nicklas Nordborg References #262 and #340. The overview and validation is now complete. …
(edit) @3033   16 years Nicklas Nordborg References #262, #340: First prototype for experiment overview. Reads …
(edit) @3025   16 years Jari Häkkinen Changed src install instructions to use 'ant package.bin'
(edit) @3024   16 years Nicklas Nordborg References #262 and #340. Added draft specification
(edit) @2992   16 years Johan Enell Merged log:branches/2.1#2846:2990 trunk.
(edit) @2977   16 years Nicklas Nordborg Fixes #138: Write documentation: 5c) Authentication plug-ins
(edit) @2976   16 years Nicklas Nordborg Fixed some spelling errors and added links to Javadoc
(edit) @2972   16 years Nicklas Nordborg References #383 and #412. Include some files from the misc directory …
(edit) @2970   16 years Nicklas Nordborg Fixes #440: Update to latest versions of 3rd-party software Verified …
(edit) @2967   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @2966   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @2963   16 years Nicklas Nordborg Added link to BASE web site
(edit) @2962   16 years Nicklas Nordborg References #412: Fix build.xml to make it more developer-friendly …
(edit) @2959   16 years Nicklas Nordborg References #412: Fix build.xml to make it more developer-friendly
(edit) @2955   16 years Jari Häkkinen Minor clarification for genepix reporter map imports.
(edit) @2954   16 years Jari Häkkinen Improved Genepix information in the getting started doc.
(edit) @2948   16 years Jari Häkkinen Fixed typos.
(edit) @2940   16 years Nicklas Nordborg References #438
(edit) @2936   16 years Nicklas Nordborg References #333: Administrator documentation Added information about …
(edit) @2935   16 years Nicklas Nordborg Test program now sets USE permission to plugins since the default has …
(edit) @2934   16 years Nicklas Nordborg Updated UML diagrams of recent database changes (schema version 23 --> 26)
(edit) @2932   16 years Nicklas Nordborg Fixes #140: Write documentation: 5e) Secondary file storage Also …
(edit) @2926   16 years Jari Häkkinen Moved merge.txt info to developer docs.
(edit) @2925   16 years Jari Häkkinen Added svndigest:ignore property tom some items.
(edit) @2924   16 years Jari Häkkinen Update to publishing a new release.
(edit) @2898   16 years Nicklas Nordborg Fixes #346: If an item is used, get information about the items that …
(edit) @2875   16 years Nicklas Nordborg Fixes #339: Protocol parameters
(edit) @2869   16 years Jari Häkkinen More getting started information.
(edit) @2858   16 years Nicklas Nordborg Added link to instructions for upgrading a Postgres database
(edit) @2851   16 years Nicklas Nordborg References #398: Version information in the "About" button Added info …
(edit) @2848   16 years Jari Häkkinen Updated information on how to publish a new release.
(edit) @2841   16 years Jari Häkkinen Fixed typo.
(edit) @2820   16 years Jari Häkkinen Improved getting started doc.
(edit) @2815   16 years Nicklas Nordborg References #215: Incorrect use of DynamicSpotQuery? in table view, plot …
(edit) @2810   16 years Jari Häkkinen Improving getting started doc.
(edit) @2801   16 years Jari Häkkinen Improving getting started doc.
(edit) @2800   16 years Jari Häkkinen Spell checked and renamed file.
(edit) @2799   16 years Jari Häkkinen Added info.
(edit) @2798   16 years Jari Häkkinen Updated information about affymetrix in BASE.
(edit) @2779   16 years Jari Häkkinen Addresses #406. Removed references to annotations system since it …
(edit) @2773   16 years Jari Häkkinen Reformatted new revision section.
(edit) @2772   16 years Jari Häkkinen Added developer information on how to run a server agains a WC.
(edit) @2769   16 years Nicklas Nordborg Minor changes to instructions and fixed some example plot images.
(edit) @2764   16 years Jari Häkkinen Removed obsolete comment relating to RC releases of BASE 2.0.
(edit) @2758   16 years Jari Häkkinen Added information about extended properties.
(edit) @2757   16 years Jari Häkkinen Added item to release recipe.
(edit) @2756   16 years Jari Häkkinen Spell checked.
(edit) @2751   16 years Nicklas Nordborg Fixes #313: Error handling in import plugins
(edit) @2744   16 years Jari Häkkinen Added milestone update information when releasing a new version.
(edit) @2743   16 years Jari Häkkinen Reordered the recipe for releasing new revision.
(edit) @2733   16 years Nicklas Nordborg Fixes #316: Add support for color coding in data tables
(edit) @2722   16 years Nicklas Nordborg Fixes #220: Plugin permissions
(edit) @2718   16 years Jari Häkkinen Finalized information about publishing a new release.
(edit) @2716   16 years Jari Häkkinen Fixed typos.
(edit) @2715   16 years Jari Häkkinen First steps toward user documentation.
(edit) @2714   16 years Jari Häkkinen Added section heading for howto change extended properties.
(edit) @2713   16 years Jari Häkkinen Added documentation about extended-properties.xml.
(edit) @2712   16 years Jari Häkkinen Fixed spelling.
(edit) @2711   16 years Jari Häkkinen Fixed links and added mysql/innodb tuning info.
(edit) @2710   16 years Johan Enell Merge commands has been added
(edit) @2709   16 years Nicklas Nordborg Fixes #318: Plugin configuration values are not stored for a job And …
(edit) @2705   16 years Jari Häkkinen Removed references to RC2.
(edit) @2693   16 years Nicklas Nordborg Fixes #368: Migration should migrate plugin settings for BASE 1 plugins
(edit) @2690   16 years Johan Enell Merged log:branches/2.0#2618:2688 from branch 2.0 to trunk.
(edit) @2686   16 years Jari Häkkinen Added information on what to do when publishing a new release of BASE.
(edit) @2682   16 years Jari Häkkinen Spell checked.
(edit) @2648   16 years Nicklas Nordborg References #351: External job server usage Most functionality is now …
(edit) @2642   16 years Jari Häkkinen Refs #363. Added information about the RC1 to 2.0 updating problem.
(edit) @2633   16 years Jari Häkkinen Added link to http://base.thep.lu.se
(edit) @2627   16 years Nicklas Nordborg References #351: External job server usage Added data layer class, …
(edit) @2626   16 years Martin Svensson Updated UML-diagram with entity value for plugin permissions.
(edit) @2625   16 years Nicklas Nordborg Added JobAgent? to UML diagram
(edit) @2624   16 years Martin Svensson Updated the documentation with information about plugin permissions.
(edit) @2623   16 years Nicklas Nordborg Removed links to the very old development status pages. Fixed redirect …
(edit) @2621   16 years Johan Enell Merge file added
(edit) @2615   16 years Nicklas Nordborg Added info about debug parameter for the migration.
(edit) @2614   16 years Nicklas Nordborg References #332: Base 1 ID lookup is unstable Should fix the original …
(edit) @2608   16 years Jari Häkkinen Added information about the broken migration tool.
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