source: trunk/src/core

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Diff Rev Age Author Log Message
(edit) @3765   14 years Martin Svensson References #364, Correct inconsistent variable/property 'plugin.dir' …
(edit) @3760   14 years Martin Svensson Fixes #364, Uses the existing JarClassLoader?, when reading/loading …
(edit) @3741   14 years Nicklas Nordborg Fixes #758: Store number of features in a database column of ArrayDesign?
(edit) @3737   14 years Nicklas Nordborg Added modified AffxFusion?.jar that can read from InputStream? for some …
(edit) @3733   14 years Martin Svensson References #364 The functionallity is more or less done. The internal …
(edit) @3725   14 years Jari Häkkinen Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
(edit) @3719   14 years Nicklas Nordborg References #411: Most of the basic functionality is now in place and …
(edit) @3706   14 years Martin Svensson References #364 Started updating the GUI to support auto installation …
(edit) @3704   14 years Martin Svensson References #364 Moved the PluginInfo? class to another package, added a …
(edit) @3700   14 years Martin Svensson References #364 The main functions in core is now done for this. A …
(edit) @3698   14 years Martin Svensson References #364 Automatic install non-core plugins. First check-in, …
(edit) @3679   14 years Jari Häkkinen Changing the pesky "a (ä) character to a.
(edit) @3678   14 years Nicklas Nordborg Require DTD files to be encoded in ISO-8859-1
(edit) @3675   14 years Jari Häkkinen Fixing copyright statements. Fixing svn properties.
(edit) @3665   14 years Martin Svensson Fixes #514 Change permissions in Power User
(edit) @3664   14 years Nicklas Nordborg Fixes #722: Create DynamicReporterQuery?
(edit) @3663   14 years Nicklas Nordborg Measure performance for reporter migration.
(edit) @3661   14 years Nicklas Nordborg References #720: Progress reporter when emptying trashcan Progress …
(edit) @3656   14 years Nicklas Nordborg Fixes #719: Add support for JEP if() function
(edit) @3655   14 years Nicklas Nordborg Fixes #720: Progress reporter when emptying trashcan
(edit) @3651   14 years Jari Häkkinen Fixed svn properties issues.
(edit) @3649   14 years Nicklas Nordborg Make sure list of formulas get loaded to avoid …
(edit) @3647   14 years Nicklas Nordborg Fixes #718: BioAssaySet? tries to calculate number of spots and …
(edit) @3646   14 years Nicklas Nordborg References #451: Zipped download Fixed test program and added it to …
(edit) @3643   14 years Nicklas Nordborg Fixes #451: Zipped download Added user and plug-in developer documentation
(edit) @3642   14 years Nicklas Nordborg Fixes #715: Install should set same permission on plugin …
(edit) @3641   14 years Nicklas Nordborg References #451: Zipped download Major redesign of the packing …
(edit) @3640   14 years Johan Enell a plugin can have no parameters
(edit) @3631   14 years Nicklas Nordborg Fixes #701: JarClassLoader? should be able to auto-reload based on timestamp
(edit) @3629   14 years Nicklas Nordborg Fixes #712, References #711
(edit) @3627   14 years Nicklas Nordborg References #709: Forgot to add predefined query
(edit) @3626   14 years Nicklas Nordborg Fixes #486: Import raw data from the Illumina platform
(edit) @3625   14 years Nicklas Nordborg Fixes #709: Install should install missing plug-in configurations when …
(edit) @3624   14 years Nicklas Nordborg Fixes #708: "NaN" and "Infinity" values in files causes SqlException?
(edit) @3622   14 years Johan Enell Fixes #700, #590
(edit) @3618   14 years Nicklas Nordborg Fixes #702: Add lineNum() function(s) to mapping expressions supported …
(edit) @3617   14 years Nicklas Nordborg Fixes #703: Error message when loading invalid XML files doesn't …
(edit) @3616   14 years Nicklas Nordborg References #698: Fix Javadoc warnings Removed all existing warnings. …
(edit) @3610   14 years Nicklas Nordborg References #360: Make subsections on view pages hideable …
(edit) @3606   14 years Nicklas Nordborg Fixes #697: Uploading and unpacking a compressed file corrupts the file
(edit) @3604   14 years Nicklas Nordborg Fixes #257: Fix the Jep.nodeToExpression method
(edit) @3603   14 years Nicklas Nordborg Undo last commit which was done by accident.
(edit) @3602   14 years Nicklas Nordborg
(edit) @3601   14 years Nicklas Nordborg References #692: Fixes possible NullPointerException? in update
(edit) @3600   14 years Nicklas Nordborg Fixes #480: Verify values in extended-properties.xml and raw-data-types.xml
(edit) @3597   14 years Nicklas Nordborg Fixes #655: Plugins -> defintions fails with 'illegal attempt to …
(edit) @3596   14 years Nicklas Nordborg Fixes #654: Batch deletion of reporters
(edit) @3594   14 years Nicklas Nordborg Fixes #626: Remove base1executor any to any links
(edit) @3593   14 years Nicklas Nordborg Fixes #692: Jobs that are part of an experiment should use permissions …
(edit) @3592   15 years Nicklas Nordborg Fixes #687: Make it possible for other plug-ins than the FormulaFilter?
(edit) @3590   15 years Nicklas Nordborg Fixes #688: Don't use Float.valueOf() or Float.parseString() to parse …
(edit) @3587   15 years Martin Svensson References #686 Two more coreplugins are updated …
(edit) @3586   15 years Nicklas Nordborg References #326: Mass annotation plug-in Major features in place. …
(edit) @3585   15 years Martin Svensson Fixes #685 The documentation is done
(edit) @3583   15 years Martin Svensson References #686 Jep Formula Filter and JepExtraValueCalculator? can now …
(edit) @3575   15 years Martin Svensson Fixes #685 Add plugin parameter asking for bioassays to …
(edit) @3572   15 years Martin Svensson Fixes #451 This plugin is now installed with BASE as a core plugin and …
(edit) @3569   15 years Nicklas Nordborg Fixes #684: AbstractAnalysisPlugin? should not include [Item.BIOASSAYS, …
(edit) @3568   15 years Martin Svensson References #451 Packer plugin for zip, tar.gz and tar.bz2 format …
(edit) @3564   15 years Nicklas Nordborg Fixes #675, #676 and #677
(edit) @3562   15 years Nicklas Nordborg Fixes #649 and #674
(edit) @3561   15 years Nicklas Nordborg Fixes #672: Enable AnnotationRestriction? to be used on joined tables
(edit) @3558   15 years Nicklas Nordborg Fixes #669
(edit) @3557   15 years Nicklas Nordborg Fixes #648
(edit) @3556   15 years Nicklas Nordborg Fixes #648 and #650
(edit) @3552   15 years Martin Svensson References #375. Only wants to do a commit before the weekend.
(edit) @3544   15 years Martin Svensson Fixes #191. Updating schema version and added since(javadoc) to new methods
(edit) @3536   15 years Martin Svensson References #625. This will correct the issue related to #657
(edit) @3535   15 years Martin Svensson References #191
(edit) @3534   15 years Martin Svensson References #657
(edit) @3530   15 years Johan Enell some admin changes
(edit) @3528   15 years Johan Enell AverageMethod? added Fixes #648
(edit) @3527   15 years Nicklas Nordborg Fixes #642: Add method that finds an enumerated annotation value that …
(edit) @3526   15 years Nicklas Nordborg Fixes #252: Make the trashcan smarter when deleting items
(edit) @3523   15 years Nicklas Nordborg Fixes #583: Allow changing the array design of a raw bioasay when it …
(edit) @3522   15 years Johan Enell Fixes #650 added some info to the geometricMean method
(edit) @3517   15 years Johan Enell References #650 Creates Ql and String from the parts already made in …
(edit) @3514   15 years Johan Enell Fixes #650
(edit) @3513   15 years Nicklas Nordborg Fixes #651
(edit) @3510   15 years Nicklas Nordborg Fixes #470
(edit) @3503   15 years Nicklas Nordborg Fixes #628
(edit) @3502   15 years Nicklas Nordborg References #518. Fixed compilation warning from Hibernate. Added …
(edit) @3501   15 years Johan Enell Merged log:branches/2.3.1#3431:3486 trunk.
(edit) @3495   15 years Nicklas Nordborg References #625. Major features are now in place. It's a bit tricky to …
(edit) @3484   15 years Nicklas Nordborg Fixes #627
(edit) @3483   15 years Nicklas Nordborg Read raw data headers from CEL file and put in RawBioAssay?
(edit) @3482   15 years Nicklas Nordborg Fixes #435.
(edit) @3480   15 years Martin Svensson References #426 Option to flag an import/export job to be removed, …
(edit) @3476   15 years Nicklas Nordborg Fixes #372
(edit) @3472   15 years Nicklas Nordborg Fixes #469.
(edit) @3471   15 years Nicklas Nordborg Fixes #574 and #573.
(edit) @3468   15 years Nicklas Nordborg References #574, #573 and #469. Created a simple test case with dirty …
(edit) @3467   15 years Nicklas Nordborg Fixes #81
(edit) @3466   15 years Nicklas Nordborg Fixes #446
(edit) @3465   15 years Nicklas Nordborg Fixes #630.
(edit) @3463   15 years Nicklas Nordborg Fxies #620
(edit) @3461   15 years Nicklas Nordborg Remvoed unused imports
(edit) @3460   15 years Nicklas Nordborg References #558. All places that used Session.connection(), which has …
(edit) @3459   15 years Nicklas Nordborg Fixes #567
(edit) @3456   15 years Nicklas Nordborg Fixes #564. It is now possible to use: ch(1) == null or {{{ch(1) …
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