source: trunk/src/core

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Diff Rev Age Author Log Message
(edit) @4040   14 years Martin Svensson Fixes #847 Most of the missing javadocs tags have been added in the …
(edit) @4034   14 years Martin Svensson References #847 Updated some javadocs. Added some missing tags.
(edit) @4030   14 years Nicklas Nordborg Fixes #858: Display database name when starting initdb and updatedb scripts
(edit) @4026   14 years Martin Svensson References #847 Updated some javadocs. Complemented with tags for some …
(edit) @4023   14 years Martin Svensson References #847 Updated some javadocs. Most of the thrown exceptions …
(edit) @4020   14 years Martin Svensson References #847 Updated some javadocs.
(edit) @4017   14 years Martin Svensson References #847 Updated some javadocs.
(edit) @4011   14 years Martin Svensson References #847 Updated some javadocs. Removed an exception, that is …
(edit) @4007   14 years Nicklas Nordborg References #806: Experimental factor values display on Experiment page …
(edit) @4006   14 years Nicklas Nordborg Fixes #844: File.isUsed() doesn't check if a file has been used in a …
(edit) @3999   14 years Nicklas Nordborg Fixes #842: PluginDefinition?.isUsed() throws exception
(edit) @3998   14 years Nicklas Nordborg References #825: Include items 'shared to me' by default The default …
(edit) @3994   15 years Johan Enell Merged patch release 2.4.6 to the trunk. Delta 2.4.6 - 2.5
(edit) @3992   15 years Nicklas Nordborg Fixes #728: jobagent.sh should accept command status Also made the …
(edit) @3984   15 years Nicklas Nordborg References #827: Add more web services methods Added example code for …
(edit) @3980   15 years Nicklas Nordborg Fixes #829: Item not found: Annotation[new]
(edit) @3979   15 years Nicklas Nordborg Fixes #828: Raw data importer should be able to set annotations on the …
(edit) @3978   15 years Martin Svensson References #827 Created ReporterService? and a method to get the …
(edit) @3977   15 years Nicklas Nordborg References #827: Add more web services methods Added …
(edit) @3976   15 years Martin Svensson References #827 Added ExperimentService?.getReporterLists().
(edit) @3974   15 years Nicklas Nordborg References #827: Add more web services methods Added Transferable and …
(edit) @3973   15 years Nicklas Nordborg References #827: Add more web services methods * Added services to …
(edit) @3972   15 years Nicklas Nordborg References #492: Web services Added ServicesUtil?.listToInfo() method …
(edit) @3960   15 years Nicklas Nordborg References #807 Added documentation for plug-in developers.
(edit) @3957   15 years Martin Svensson References #823 Info classes implement Serializable-interface. Added …
(edit) @3956   15 years Martin Svensson References #823 The *Info classes are now refactored. The property of …
(edit) @3948   15 years Nicklas Nordborg References #746. * Fixes links going from javadoc to docbook. * …
(edit) @3941   15 years Martin Svensson Correct warnings in Javadoc
(edit) @3933   15 years Nicklas Nordborg Fixes #655
(edit) @3929   15 years Jari Häkkinen Fixed typo.
(edit) @3927   15 years Nicklas Nordborg Fixes issue with compiling under Java 1.5
(edit) @3911   15 years Nicklas Nordborg Fixes #811: Wildcard or regular expressions in raw data column …
(edit) @3906   15 years Nicklas Nordborg Fixes #813: Postgres db-engine ignores schema information in …
(edit) @3905   15 years Nicklas Nordborg Fixes #810: Implement query options for Include.ANNOTATED and …
(edit) @3900   15 years Nicklas Nordborg Fixes #612: Add checks in the core so that unsaved objects are not …
(edit) @3899   15 years Nicklas Nordborg References #721: Store data in files instead of in the database …
(edit) @3898   15 years Nicklas Nordborg References #806: Experimental factor values display on Experiment page …
(edit) @3888   15 years Nicklas Nordborg References #707: Can't unlink items that have been put in the trashcan …
(edit) @3882   15 years Nicklas Nordborg References #808: Remove Thread.sleep() from HibernateUtil?.loadIterator …
(edit) @3875   15 years Nicklas Nordborg Fixes #806: Experimental factor values display on Experiment page can …
(edit) @3871   15 years Nicklas Nordborg Fixes #595: Add option to stop a plug-in from beeing executed by the …
(edit) @3867   15 years Nicklas Nordborg References #721: Store data in files instead of in the database * …
(edit) @3859   15 years Nicklas Nordborg References #789: Extend "Experiment overview" to check for problems …
(edit) @3858   15 years Nicklas Nordborg References #794: Additional fix needed in trunk due to API changes in …
(edit) @3857   15 years Jari Häkkinen Merged patch release 2.4.4 to the trunk. Delta 2.4.4 - 2.4.3
(edit) @3850   15 years Nicklas Nordborg References #788: Select project default platforms / variant The …
(edit) @3847   15 years Nicklas Nordborg Fixes #788: Select project default platforms / variant
(edit) @3846   15 years Martin Svensson References #492 Copying webservices into trunk
(edit) @3845   15 years Martin Svensson References #492 Copying webservices into trunk
(edit) @3837   15 years Nicklas Nordborg No longer implement the FilenameFilter? interface since it couldn't be …
(edit) @3835   15 years Nicklas Nordborg References #721. Updated documentation.
(edit) @3832   15 years Nicklas Nordborg References #364. * Test program now looks for the test plug-ins: …
(edit) @3820   15 years Nicklas Nordborg Merged branches/filedb into trunk.
(edit) @3815   15 years Martin Svensson Fixes #799. The same bug was found when BASE tries to look in the …
(edit) @3789   15 years Johan Enell Merged the 2.4.3 release log:branches/2.4-stable#3771:3788
(edit) @3784   15 years Nicklas Nordborg Fixes #655: Plugins -> defintions fails with 'illegal attempt to …
(edit) @3775   15 years Johan Enell Merged the 2.4.2 release log:branches/2.4-stable#3694:3770
(edit) @3765   15 years Martin Svensson References #364, Correct inconsistent variable/property 'plugin.dir' …
(edit) @3760   15 years Martin Svensson Fixes #364, Uses the existing JarClassLoader?, when reading/loading …
(edit) @3741   15 years Nicklas Nordborg Fixes #758: Store number of features in a database column of ArrayDesign?
(edit) @3737   15 years Nicklas Nordborg Added modified AffxFusion?.jar that can read from InputStream? for some …
(edit) @3733   15 years Martin Svensson References #364 The functionallity is more or less done. The internal …
(edit) @3725   15 years Jari Häkkinen Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
(edit) @3719   15 years Nicklas Nordborg References #411: Most of the basic functionality is now in place and …
(edit) @3706   15 years Martin Svensson References #364 Started updating the GUI to support auto installation …
(edit) @3704   15 years Martin Svensson References #364 Moved the PluginInfo? class to another package, added a …
(edit) @3700   15 years Martin Svensson References #364 The main functions in core is now done for this. A …
(edit) @3698   15 years Martin Svensson References #364 Automatic install non-core plugins. First check-in, …
(edit) @3679   15 years Jari Häkkinen Changing the pesky "a (ä) character to a.
(edit) @3678   15 years Nicklas Nordborg Require DTD files to be encoded in ISO-8859-1
(edit) @3675   15 years Jari Häkkinen Fixing copyright statements. Fixing svn properties.
(edit) @3665   15 years Martin Svensson Fixes #514 Change permissions in Power User
(edit) @3664   15 years Nicklas Nordborg Fixes #722: Create DynamicReporterQuery?
(edit) @3663   15 years Nicklas Nordborg Measure performance for reporter migration.
(edit) @3661   15 years Nicklas Nordborg References #720: Progress reporter when emptying trashcan Progress …
(edit) @3656   15 years Nicklas Nordborg Fixes #719: Add support for JEP if() function
(edit) @3655   15 years Nicklas Nordborg Fixes #720: Progress reporter when emptying trashcan
(edit) @3651   15 years Jari Häkkinen Fixed svn properties issues.
(edit) @3649   15 years Nicklas Nordborg Make sure list of formulas get loaded to avoid …
(edit) @3647   15 years Nicklas Nordborg Fixes #718: BioAssaySet? tries to calculate number of spots and …
(edit) @3646   15 years Nicklas Nordborg References #451: Zipped download Fixed test program and added it to …
(edit) @3643   15 years Nicklas Nordborg Fixes #451: Zipped download Added user and plug-in developer documentation
(edit) @3642   15 years Nicklas Nordborg Fixes #715: Install should set same permission on plugin …
(edit) @3641   15 years Nicklas Nordborg References #451: Zipped download Major redesign of the packing …
(edit) @3640   15 years Johan Enell a plugin can have no parameters
(edit) @3631   15 years Nicklas Nordborg Fixes #701: JarClassLoader? should be able to auto-reload based on timestamp
(edit) @3629   15 years Nicklas Nordborg Fixes #712, References #711
(edit) @3627   15 years Nicklas Nordborg References #709: Forgot to add predefined query
(edit) @3626   15 years Nicklas Nordborg Fixes #486: Import raw data from the Illumina platform
(edit) @3625   15 years Nicklas Nordborg Fixes #709: Install should install missing plug-in configurations when …
(edit) @3624   15 years Nicklas Nordborg Fixes #708: "NaN" and "Infinity" values in files causes SqlException?
(edit) @3622   15 years Johan Enell Fixes #700, #590
(edit) @3618   15 years Nicklas Nordborg Fixes #702: Add lineNum() function(s) to mapping expressions supported …
(edit) @3617   15 years Nicklas Nordborg Fixes #703: Error message when loading invalid XML files doesn't …
(edit) @3616   15 years Nicklas Nordborg References #698: Fix Javadoc warnings Removed all existing warnings. …
(edit) @3610   15 years Nicklas Nordborg References #360: Make subsections on view pages hideable …
(edit) @3606   15 years Nicklas Nordborg Fixes #697: Uploading and unpacking a compressed file corrupts the file
(edit) @3604   15 years Nicklas Nordborg Fixes #257: Fix the Jep.nodeToExpression method
(edit) @3603   15 years Nicklas Nordborg Undo last commit which was done by accident.
(edit) @3602   15 years Nicklas Nordborg
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