#
# ChangeLog for trunk/src/examples
#
# Generated by Trac 1.2.3
# May 23, 2022, 2:31:44 AM

Wed, 29 Nov 2006 07:59:12 GMT Nicklas Nordborg [2972]
	* trunk/build.xml (modified)
	* trunk/doc/admin/extended-properties.html (modified)
	* trunk/misc/config (moved)

	References #383 and #412. Include some files from the misc directory ...


Thu, 05 Oct 2006 23:20:03 GMT Jari Häkkinen [2713]
	* trunk/doc/admin/extended-properties.html (added)
	* trunk/doc/admin/index.html (modified)
	* trunk/doc/installation.html (modified)
	* trunk/src/examples/config/minimalistic_extended-properties.xml (modified)

	Added documentation about extended-properties.xml.


Wed, 04 Oct 2006 20:25:38 GMT Jari Häkkinen [2706]
	* trunk/src/examples/config (added)
	* trunk/src/examples/config/minimalistic_extended-properties.xml (copied)

	Creating sample extended-properties.xml files.


Wed, 30 Aug 2006 06:03:09 GMT Nicklas Nordborg [2606]
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleAnalyzer.java (modified)
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/Base1PluginExecuter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/FormulaFilter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/HelpExporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/HelpImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/IntensityCalculatorPlugin.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/LowessNormalization.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/MedianRatioNormalization.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/PlateFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/PlateMappingExporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/PlateMappingImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/PrintMapFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/RawDataFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/ReporterFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/ReporterMapFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/SpotImageCreator.java (modified)
	* trunk/src/test/JarPluginAbout.java (modified)
	* trunk/src/test/NullPlugin.java (modified)

	Removed non-existing email address from plugins.


Thu, 10 Aug 2006 09:54:19 GMT Nicklas Nordborg [2512]
	* trunk/doc/development/overview/core/plugins.png (modified)
	* trunk/doc/development/overview/data/plugins.png (modified)
	* trunk/doc/uml/coreclasses.uml.xml (modified)
	* trunk/doc/uml/dataclasses.uml.xml (modified)
	* trunk/src/clients/web/net/sf/basedb/clients/web/plugins/SimpleExport.java (modified)
	* trunk/src/core/common-queries.xml (modified)
	* trunk/src/core/net/sf/basedb/core/Install.java (modified)
	* trunk/src/core/net/sf/basedb/core/Job.java (modified)
	* trunk/src/core/net/sf/basedb/core/PluginDefinition.java (modified)
	* trunk/src/core/net/sf/basedb/core/Update.java (modified)
	* trunk/src/core/net/sf/basedb/core/data/PluginDefinitionData.java (modified)
	* trunk/src/core/net/sf/basedb/core/plugin/AbstractPlugin.java (modified)
	* trunk/src/core/net/sf/basedb/core/plugin/Plugin.java (modified)
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleAnalyzer.java (modified)
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/Base1PluginExecuter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/FormulaFilter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/HelpExporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/HelpImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/IntensityCalculatorPlugin.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/LowessNormalization.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/MedianRatioNormalization.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/PlateFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/PlateMappingExporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/PlateMappingImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/PrintMapFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/RawDataFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/ReporterFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/ReporterMapFlatFileImporter.java (modified)
	* trunk/src/plugins/core/net/sf/basedb/plugins/SpotImageCreator.java (modified)
	* trunk/src/test/JarPlugin.java (modified)
	* trunk/src/test/NullPlugin.java (modified)
	* trunk/src/test/TestPrintMapFlatFileImporter.java (modified)
	* trunk/www/admin/pluginconfigurations/edit_configuration.jsp (modified)
	* trunk/www/admin/pluginconfigurations/index.jsp (modified)
	* trunk/www/admin/pluginconfigurations/list_configurations.jsp (modified)
	* trunk/www/admin/pluginconfigurations/view_configuration.jsp (modified)
	* trunk/www/admin/plugindefinitions/list_plugins.jsp (modified)
	* trunk/www/admin/plugindefinitions/view_plugin.jsp (modified)
	* trunk/www/common/import/index.jsp (modified)
	* trunk/www/common/import/select_plugin.jsp (modified)
	* trunk/www/common/plugin/index.jsp (modified)
	* trunk/www/common/plugin/select_plugin.jsp (modified)
	* trunk/www/include/scripts/plugin.js (modified)

	Fixes #302: Running a plugin without a configuration should not be ...


Tue, 08 Aug 2006 14:01:22 GMT Nicklas Nordborg [2498]
	* trunk/doc/development/overview/dynamic/filter.html (modified)
	* trunk/doc/development/overview/dynamic/rootbioassayset.html (modified)
	* trunk/doc/development/plugins/analysis/index.html (modified)
	* trunk/src/core/net/sf/basedb/core/FilterBatcher.java (modified)
	* trunk/src/core/net/sf/basedb/core/PositionExtraValueBatcher.java (modified)
	* trunk/src/core/net/sf/basedb/core/SpotBatcher.java (modified)
	* trunk/src/core/net/sf/basedb/core/SpotExtraValueBatcher.java (modified)
	* trunk/src/core/net/sf/basedb/core/Transformation.java (modified)
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleAnalyzer.java (modified)

	Fixes #314: Update documentation that shows code examples with ...


Thu, 01 Jun 2006 06:35:44 GMT Nicklas Nordborg [2346]
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleAnalyzer.java (modified)
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleImporter.java (modified)

	Fixed compilation bug due to core interface changes.


Thu, 20 Apr 2006 06:33:36 GMT Nicklas Nordborg [2168]
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleImporter.java (modified)

	Made ExampleImporter an AutoDetectingImporter


Fri, 07 Apr 2006 12:56:14 GMT Nicklas Nordborg [2155]
	* trunk/build.xml (modified)
	* trunk/doc/development/index.html (modified)
	* trunk/doc/development/plugins/analysis/index.html (modified)
	* trunk/src/examples/plugins/build.xml (modified)
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleAnalyzer.java (added)

	Fixes #139: Write documentation: 5d) Analysis plug-ins
	Added another ...


Fri, 07 Apr 2006 09:35:26 GMT Nicklas Nordborg [2154]
	* trunk/build.xml (modified)
	* trunk/doc/development/index.html (modified)
	* trunk/doc/development/plugins/import/index.html (modified)
	* trunk/doc/development/plugins/index.html (modified)
	* trunk/doc/index.html (modified)
	* trunk/src/core/net/sf/basedb/plugins/RawDataFlatFileImporter.java (modified)
	* trunk/src/examples (added)
	* trunk/src/examples/plugins (added)
	* trunk/src/examples/plugins/MANIFEST.MF (added)
	* trunk/src/examples/plugins/bin (added)
	* trunk/src/examples/plugins/build.xml (added)
	* trunk/src/examples/plugins/lib (added)
	* trunk/src/examples/plugins/lib/Add BASE2Core.jar to this directory.txt (added)
	* trunk/src/examples/plugins/src (added)
	* trunk/src/examples/plugins/src/net (added)
	* trunk/src/examples/plugins/src/net/sf (added)
	* trunk/src/examples/plugins/src/net/sf/basedb (added)
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins (added)
	* trunk/src/examples/plugins/src/net/sf/basedb/exampleplugins/ExampleImporter.java (added)

	Fixes #137: Write documentation 5b) Plug-ins for importing data ...