source: trunk/src/plugins/core/net/sf

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Diff Rev Age Author Log Message
(edit) @3264   15 years Johan Enell Merged log:branches/2.2.3#3188:3260 to trunk.
(edit) @3128   16 years Johan Enell Added javadoc
(edit) @3112   16 years Jari Häkkinen Removed MeV export of an unneeded reporter column.
(edit) @3109   16 years Jari Häkkinen Blank experimental factor labels are propagated properly in MeV export.
(edit) @3108   16 years Johan Enell BASE1PluginExecuter uses BioAssaySetExporter? to create basefile
(edit) @3107   16 years Johan Enell Fixes #439
(edit) @3098   16 years Nicklas Nordborg References #10: Hierarchical clustering Added servlet for downloading …
(edit) @3082   16 years Martin Svensson Fixes #478 Plate Importer requests more permissions
(edit) @3068   16 years Johan Enell Merged log:branches/2.1.2#2991:3059 to trunk
(edit) @3035   16 years Johan Enell References #439
(edit) @3023   16 years Nicklas Nordborg Fixes #311: Allow parsing of numbers with different locale settings
(edit) @3011   16 years Martin Svensson Fixes #444 Plugins should check that they are allowed to …
(edit) @2993   16 years Nicklas Nordborg Fixes #215: Incorrect use of DynamicSpotQuery? in table view, plot …
(edit) @2992   16 years Johan Enell Merged log:branches/2.1#2846:2990 trunk.
(edit) @2981   16 years Nicklas Nordborg Fixes #447: Fix javadoc warnings
(edit) @2942   16 years Nicklas Nordborg Fixes #317: Display and enter dates in different formats
(edit) @2920   16 years Nicklas Nordborg PlateFlatFileImporter? needs access to PlateGeometries?
(edit) @2876   16 years Martin Svensson References #397 Removed fields that are not used.
(edit) @2872   16 years Martin Svensson References #397 'Dead local store' fixed
(edit) @2868   16 years Nicklas Nordborg Fixes #189: Allow export plugins to send download immediately to …
(edit) @2866   16 years Martin Svensson References #397 Null pointer dereference
(edit) @2860   16 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2857   16 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2854   16 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2849   16 years Jari Häkkinen Fixed typos in plug-in descriptions.
(edit) @2843   16 years Nicklas Nordborg Removed unused imports
(edit) @2839   16 years Johan Enell Base1Executer throws an exception when average on gene is true. This …
(edit) @2838   16 years Johan Enell Fixes #312
(edit) @2837   16 years Jari Häkkinen Exporting reporter ids. Made query code more robust for changes.
(edit) @2836   16 years Johan Enell Fixes #410
(edit) @2835   16 years Jari Häkkinen Removed comment header from MeV tab export. MeV does not support …
(edit) @2834   16 years Johan Enell Base1executer will teminate if it cant find any configfile. fixes #409
(edit) @2833   16 years Nicklas Nordborg Removed debug output.
(edit) @2832   16 years Johan Enell Fixes #409
(edit) @2831   16 years Nicklas Nordborg Plugin configuration exporter now uses Integer parameter type for …
(edit) @2830   16 years Jari Häkkinen Fixed inconsistencies with bioassay set spot view and exported data. …
(edit) @2829   16 years Nicklas Nordborg Fixed incorrect permissions for plugin configuration exporter.
(edit) @2828   16 years Martin Svensson Fixes #336 Install common file formats with main installation. Problem …
(edit) @2827   16 years Nicklas Nordborg Updated requested permissions for export plugins
(edit) @2824   16 years Jari Häkkinen Added BioAssaySetExporter? class.
(edit) @2803   16 years Nicklas Nordborg Changed decscription for default error handling to make it easier to …
(edit) @2778   16 years Nicklas Nordborg Fixes #401: Filter plugin - failed to correctly apply filter on M …
(edit) @2759   16 years Martin Svensson Fixes #335 Plugins for importing/exporting plugin configurations
(edit) @2755   16 years Martin Svensson References #335. Backup for the weekend.Plugins not quite ready yet.
(edit) @2751   16 years Nicklas Nordborg Fixes #313: Error handling in import plugins
(edit) @2749   16 years Nicklas Nordborg Fixed bug that caused Lowess and Median normalizations to throw …
(edit) @2747   16 years Johan Enell Merged log:branches/2.0.1#2684:2740 to trunk.
(edit) @2745   16 years Nicklas Nordborg Fixes #354: Copy transformation
(edit) @2738   16 years Nicklas Nordborg Fixes #295: Filter on selected bioassays
(edit) @2733   16 years Nicklas Nordborg Fixes #316: Add support for color coding in data tables
(edit) @2727   16 years Johan Enell Fixed typo in getBase1Columns fixes #393
(edit) @2726   16 years Nicklas Nordborg
(edit) @2722   16 years Nicklas Nordborg Fixes #220: Plugin permissions
(edit) @2719   16 years Martin Svensson References #335. The first part of a plugin configuration importer. No …
(edit) @2696   16 years Martin Svensson References #335 Export plugin for plugin configurations. Saves the …
(edit) @2694   16 years Nicklas Nordborg Fixes #201, #370 and #371 * Experiment directory * Hyperlink to …
(edit) @2691   16 years Nicklas Nordborg Fixes #366: Batch upload using zip-files
(edit) @2690   16 years Johan Enell Merged log:branches/2.0#2618:2688 from branch 2.0 to trunk.
(edit) @2689   16 years Nicklas Nordborg References #366: Batch upload using zip-files Added plugin for zip …
(edit) @2680   16 years Martin Svensson References #335 A beginning of a PluginConfigurationExporter?.
(edit) @2679   16 years Nicklas Nordborg The AbstractFlatFileImporter?.requiresConfiguration() now returns true …
(edit) @2673   16 years Nicklas Nordborg Fixes #169: Use formulas for creating extra values Also added plugin …
(edit) @2669   16 years Nicklas Nordborg Fixes #342 and #344: Display extra values in plot tool and tables, etc.
(edit) @2664   16 years Nicklas Nordborg References #342, #344 and #169 Extra values are now displayed in a …
(edit) @2655   16 years Nicklas Nordborg Fixes #301: Better GUI for defining file formats
(edit) @2611   16 years Johan Enell Fixex #264
(edit) @2607   16 years Nicklas Nordborg Fixed NullPointerException? in configure() method
(edit) @2606   16 years Nicklas Nordborg Removed non-existing email address from plugins.
(edit) @2565   16 years Nicklas Nordborg Pad plate names with 0 instead of space since Postgres ignores spaces …
(edit) @2561   16 years Nicklas Nordborg Made some optimizations to the Lowess normalization. Arrays get a size …
(edit) @2550   16 years Johan Enell made some major design changes looks a little bit better now
(edit) @2547   16 years Johan Enell exports annotations
(edit) @2545   16 years Nicklas Nordborg Now handles the case with a null reporter correctly
(edit) @2544   16 years Nicklas Nordborg Fixed index problem when linking to plates/wells (use 0-based instead …
(edit) @2543   16 years Nicklas Nordborg Let superclass handle error reporting
(edit) @2541   16 years Nicklas Nordborg Better error reportering which include line number in most error messages
(edit) @2521   16 years Johan Enell supports annotation parameter
(edit) @2519   16 years Johan Enell will remove stdin/stdout if specified by config
(edit) @2512   16 years Nicklas Nordborg Fixes #302: Running a plugin without a configuration should not be possible
(edit) @2505   16 years Johan Enell plugin parameters removed only job parameters
(edit) @2504   16 years Nicklas Nordborg Fixed problem with execution time estimation.
(edit) @2492   16 years Nicklas Nordborg Fixes #196: Transformation.newProduct should create child BioAssays? if …
(edit) @2485   16 years Johan Enell Position batcher added
(edit) @2481   16 years Johan Enell Base1PluginExecuter can now export data to base1 plug-in and import from it
(edit) @2474   16 years Nicklas Nordborg Fixes #263: Update to latest versions of 3rd-party software * Log4j: …
(edit) @2470   16 years Jari Häkkinen Fixed spelling for 'successfully'.
(edit) @2462   16 years Jari Häkkinen Fixed svn properties, and fixed copyright statement for …
(edit) @2461   16 years Jari Häkkinen Alphabetized the import of packages.
(edit) @2458   16 years Nicklas Nordborg Fixes #288: Plate name prefixes not added Also fixed space padding …
(edit) @2451   16 years Johan Enell still some problems in reading the stdout
(edit) @2439   16 years Nicklas Nordborg Fixed isInContext method and some text strings for status reporting
(edit) @2435   16 years Jari Häkkinen Added missing space characters.
(edit) @2409   16 years Johan Enell Fixes #202 - TestPrintMapFlatFileImporter? throws exception: Import …
(edit) @2399   16 years Nicklas Nordborg Fixes #199: Use reporter lists in filter for bioassay sets
(edit) @2392   16 years Nicklas Nordborg References #150: Affymetrix support Changes to RawDataType? to allow …
(edit) @2367   16 years Johan Enell reading output from plugin is halfdone
(add) @2340   16 years Nicklas Nordborg Fixes #175: Move core plugins to a standalone compilation unit
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