source: trunk/src/plugins/core

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Diff Rev Age Author Log Message
(edit) @3732   15 years Martin Svensson References #733 The PluginConfigurationImporter? class can be used …
(edit) @3725   15 years Jari Häkkinen Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
(edit) @3720   15 years Martin Svensson References #733. The PluginConfigurationImporter? can now import a …
(edit) @3705   15 years Peter Johansson refs #639
(edit) @3679   15 years Jari Häkkinen Changing the pesky "a (ä) character to a.
(edit) @3675   15 years Jari Häkkinen Fixing copyright statements. Fixing svn properties.
(edit) @3668   15 years Martin Svensson Fixes #724 Nullpointer exception when 'overwrite' is not set in …
(edit) @3655   15 years Nicklas Nordborg Fixes #720: Progress reporter when emptying trashcan
(edit) @3648   15 years Peter Johansson refs #639 removing the exportPlainMatrix method.
(edit) @3646   15 years Nicklas Nordborg References #451: Zipped download Fixed test program and added it to …
(edit) @3645   15 years Peter Johansson refs #639 stupid version of exportPureMatrix method that simply …
(edit) @3644   15 years Nicklas Nordborg Fixes #716: Plugin configuration import should be able ot set the …
(edit) @3643   15 years Nicklas Nordborg Fixes #451: Zipped download Added user and plug-in developer documentation
(edit) @3641   15 years Nicklas Nordborg References #451: Zipped download Major redesign of the packing …
(edit) @3639   15 years Johan Enell Fixes #714
(edit) @3638   15 years Nicklas Nordborg Fixes #713: Differences in the configuration file from base1
(edit) @3637   15 years Nicklas Nordborg Fixes #710: Allow subclasses to AbstractFlatFileParser? to participate …
(edit) @3632   15 years Johan Enell Fixes #713
(edit) @3628   15 years Nicklas Nordborg References #625: PrintMapFlatFileImporter?.isInContext now checks if …
(edit) @3626   15 years Nicklas Nordborg Fixes #486: Import raw data from the Illumina platform
(edit) @3622   15 years Johan Enell Fixes #700, #590
(edit) @3617   15 years Nicklas Nordborg Fixes #703: Error message when loading invalid XML files doesn't …
(edit) @3616   15 years Nicklas Nordborg References #698: Fix Javadoc warnings Removed all existing warnings. …
(edit) @3615   15 years Nicklas Nordborg Fixes #691: Make LowessNormalization? and MedianRatioNormalization?
(edit) @3614   15 years Johan Enell Fixes #699
(edit) @3613   15 years Johan Enell Fixes #673
(edit) @3598   15 years Nicklas Nordborg Fixes #566: Plugins using the flat file parser should warn about …
(edit) @3596   15 years Nicklas Nordborg Fixes #654: Batch deletion of reporters
(edit) @3592   15 years Nicklas Nordborg Fixes #687: Make it possible for other plug-ins than the FormulaFilter?
(edit) @3588   15 years Nicklas Nordborg Fixes #326: Mass annotation plug-in
(edit) @3587   15 years Martin Svensson References #686 Two more coreplugins are updated …
(edit) @3586   15 years Nicklas Nordborg References #326: Mass annotation plug-in Major features in place. …
(edit) @3584   15 years Martin Svensson References #686 Updated gui contexts in JepExtraValueCalculator? to …
(edit) @3583   15 years Martin Svensson References #686 Jep Formula Filter and JepExtraValueCalculator? can now …
(edit) @3576   15 years Martin Svensson References #451 Avoid null pointer exception
(edit) @3571   15 years Martin Svensson References #451 Some minor bugs are fixed.
(edit) @3569   15 years Nicklas Nordborg Fixes #684: AbstractAnalysisPlugin? should not include [Item.BIOASSAYS, …
(edit) @3568   15 years Martin Svensson References #451 Packer plugin for zip, tar.gz and tar.bz2 format …
(edit) @3555   15 years Martin Svensson Reference #451 The actual compression is not quite written yet.
(edit) @3554   15 years Johan Enell Fixes #671, References #590 Test for BioAssaySetExporter? added which …
(edit) @3545   15 years Johan Enell Merged log:branches/2.3.2#3537:3542 to trunk.
(edit) @3510   15 years Nicklas Nordborg Fixes #470
(edit) @3509   15 years Peter Johansson References #639. First non-tested non-generic version of the matrix …
(edit) @3505   15 years Nicklas Nordborg Fixes #632, #622, #643, #644, #645, #646, #647
(edit) @3501   15 years Johan Enell Merged log:branches/2.3.1#3431:3486 trunk.
(edit) @3495   15 years Nicklas Nordborg References #625. Major features are now in place. It's a bit tricky to …
(edit) @3493   15 years Nicklas Nordborg Fixes #566
(edit) @3491   15 years Peter Johansson added Date property
(edit) @3482   15 years Nicklas Nordborg Fixes #435.
(edit) @3474   15 years Nicklas Nordborg Fixes #481
(edit) @3473   15 years Nicklas Nordborg Removed strange assignment
(edit) @3472   15 years Nicklas Nordborg Fixes #469.
(edit) @3421   15 years Johan Enell added positionBather
(edit) @3419   15 years Nicklas Nordborg Fixes #602: Migration of BASE 1 plug-in definitions is broken.
(edit) @3417   15 years Johan Enell fixed _allIntensities fixed none 2channel import
(edit) @3410   15 years Jari Häkkinen Added @version and @since where appropriate, however src/test was excluded.
(edit) @3408   15 years Johan Enell will work with older versions of configuration
(edit) @3407   15 years Johan Enell added null chack to improve error text
(edit) @3384   15 years Johan Enell corrected some backward compability errors
(edit) @3380   15 years Johan Enell jobParameter specification added as an configuration parameter
(edit) @3336   15 years Johan Enell Fixes #586
(edit) @3335   15 years Johan Enell fixes #589
(edit) @3264   15 years Johan Enell Merged log:branches/2.2.3#3188:3260 to trunk.
(edit) @3128   15 years Johan Enell Added javadoc
(edit) @3112   15 years Jari Häkkinen Removed MeV export of an unneeded reporter column.
(edit) @3109   15 years Jari Häkkinen Blank experimental factor labels are propagated properly in MeV export.
(edit) @3108   15 years Johan Enell BASE1PluginExecuter uses BioAssaySetExporter? to create basefile
(edit) @3107   15 years Johan Enell Fixes #439
(edit) @3098   15 years Nicklas Nordborg References #10: Hierarchical clustering Added servlet for downloading …
(edit) @3082   15 years Martin Svensson Fixes #478 Plate Importer requests more permissions
(edit) @3068   15 years Johan Enell Merged log:branches/2.1.2#2991:3059 to trunk
(edit) @3035   15 years Johan Enell References #439
(edit) @3023   15 years Nicklas Nordborg Fixes #311: Allow parsing of numbers with different locale settings
(edit) @3011   15 years Martin Svensson Fixes #444 Plugins should check that they are allowed to …
(edit) @2993   15 years Nicklas Nordborg Fixes #215: Incorrect use of DynamicSpotQuery? in table view, plot …
(edit) @2992   15 years Johan Enell Merged log:branches/2.1#2846:2990 trunk.
(edit) @2981   15 years Nicklas Nordborg Fixes #447: Fix javadoc warnings
(edit) @2942   16 years Nicklas Nordborg Fixes #317: Display and enter dates in different formats
(edit) @2920   16 years Nicklas Nordborg PlateFlatFileImporter? needs access to PlateGeometries?
(edit) @2876   16 years Martin Svensson References #397 Removed fields that are not used.
(edit) @2872   16 years Martin Svensson References #397 'Dead local store' fixed
(edit) @2868   16 years Nicklas Nordborg Fixes #189: Allow export plugins to send download immediately to …
(edit) @2866   16 years Martin Svensson References #397 Null pointer dereference
(edit) @2860   16 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2857   16 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2854   16 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2849   16 years Jari Häkkinen Fixed typos in plug-in descriptions.
(edit) @2843   16 years Nicklas Nordborg Removed unused imports
(edit) @2839   16 years Johan Enell Base1Executer throws an exception when average on gene is true. This …
(edit) @2838   16 years Johan Enell Fixes #312
(edit) @2837   16 years Jari Häkkinen Exporting reporter ids. Made query code more robust for changes.
(edit) @2836   16 years Johan Enell Fixes #410
(edit) @2835   16 years Jari Häkkinen Removed comment header from MeV tab export. MeV does not support …
(edit) @2834   16 years Johan Enell Base1executer will teminate if it cant find any configfile. fixes #409
(edit) @2833   16 years Nicklas Nordborg Removed debug output.
(edit) @2832   16 years Johan Enell Fixes #409
(edit) @2831   16 years Nicklas Nordborg Plugin configuration exporter now uses Integer parameter type for …
(edit) @2830   16 years Jari Häkkinen Fixed inconsistencies with bioassay set spot view and exported data. …
(edit) @2829   16 years Nicklas Nordborg Fixed incorrect permissions for plugin configuration exporter.
(edit) @2828   16 years Martin Svensson Fixes #336 Install common file formats with main installation. Problem …
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