source: trunk/src/plugins

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Diff Rev Age Author Log Message
(edit) @3554   16 years Johan Enell Fixes #671, References #590 Test for BioAssaySetExporter? added which …
(edit) @3545   16 years Johan Enell Merged log:branches/2.3.2#3537:3542 to trunk.
(edit) @3510   16 years Nicklas Nordborg Fixes #470
(edit) @3509   16 years Peter Johansson References #639. First non-tested non-generic version of the matrix …
(edit) @3505   16 years Nicklas Nordborg Fixes #632, #622, #643, #644, #645, #646, #647
(edit) @3501   16 years Johan Enell Merged log:branches/2.3.1#3431:3486 trunk.
(edit) @3495   16 years Nicklas Nordborg References #625. Major features are now in place. It's a bit tricky to …
(edit) @3493   16 years Nicklas Nordborg Fixes #566
(edit) @3491   16 years Peter Johansson added Date property
(edit) @3482   16 years Nicklas Nordborg Fixes #435.
(edit) @3474   16 years Nicklas Nordborg Fixes #481
(edit) @3473   16 years Nicklas Nordborg Removed strange assignment
(edit) @3472   16 years Nicklas Nordborg Fixes #469.
(edit) @3421   16 years Johan Enell added positionBather
(edit) @3419   16 years Nicklas Nordborg Fixes #602: Migration of BASE 1 plug-in definitions is broken.
(edit) @3417   16 years Johan Enell fixed _allIntensities fixed none 2channel import
(edit) @3410   16 years Jari Häkkinen Added @version and @since where appropriate, however src/test was excluded.
(edit) @3408   16 years Johan Enell will work with older versions of configuration
(edit) @3407   16 years Johan Enell added null chack to improve error text
(edit) @3384   16 years Johan Enell corrected some backward compability errors
(edit) @3380   16 years Johan Enell jobParameter specification added as an configuration parameter
(edit) @3336   16 years Johan Enell Fixes #586
(edit) @3335   16 years Johan Enell fixes #589
(edit) @3264   16 years Johan Enell Merged log:branches/2.2.3#3188:3260 to trunk.
(edit) @3128   17 years Johan Enell Added javadoc
(edit) @3112   17 years Jari Häkkinen Removed MeV export of an unneeded reporter column.
(edit) @3109   17 years Jari Häkkinen Blank experimental factor labels are propagated properly in MeV export.
(edit) @3108   17 years Johan Enell BASE1PluginExecuter uses BioAssaySetExporter? to create basefile
(edit) @3107   17 years Johan Enell Fixes #439
(edit) @3098   17 years Nicklas Nordborg References #10: Hierarchical clustering Added servlet for downloading …
(edit) @3082   17 years Martin Svensson Fixes #478 Plate Importer requests more permissions
(edit) @3068   17 years Johan Enell Merged log:branches/2.1.2#2991:3059 to trunk
(edit) @3035   17 years Johan Enell References #439
(edit) @3023   17 years Nicklas Nordborg Fixes #311: Allow parsing of numbers with different locale settings
(edit) @3011   17 years Martin Svensson Fixes #444 Plugins should check that they are allowed to …
(edit) @2993   17 years Nicklas Nordborg Fixes #215: Incorrect use of DynamicSpotQuery? in table view, plot …
(edit) @2992   17 years Johan Enell Merged log:branches/2.1#2846:2990 trunk.
(edit) @2981   17 years Nicklas Nordborg Fixes #447: Fix javadoc warnings
(edit) @2942   17 years Nicklas Nordborg Fixes #317: Display and enter dates in different formats
(edit) @2920   17 years Nicklas Nordborg PlateFlatFileImporter? needs access to PlateGeometries?
(edit) @2876   17 years Martin Svensson References #397 Removed fields that are not used.
(edit) @2872   17 years Martin Svensson References #397 'Dead local store' fixed
(edit) @2868   17 years Nicklas Nordborg Fixes #189: Allow export plugins to send download immediately to …
(edit) @2866   17 years Martin Svensson References #397 Null pointer dereference
(edit) @2860   17 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2857   17 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2854   17 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2849   17 years Jari Häkkinen Fixed typos in plug-in descriptions.
(edit) @2843   17 years Nicklas Nordborg Removed unused imports
(edit) @2839   17 years Johan Enell Base1Executer throws an exception when average on gene is true. This …
(edit) @2838   17 years Johan Enell Fixes #312
(edit) @2837   17 years Jari Häkkinen Exporting reporter ids. Made query code more robust for changes.
(edit) @2836   17 years Johan Enell Fixes #410
(edit) @2835   17 years Jari Häkkinen Removed comment header from MeV tab export. MeV does not support …
(edit) @2834   17 years Johan Enell Base1executer will teminate if it cant find any configfile. fixes #409
(edit) @2833   17 years Nicklas Nordborg Removed debug output.
(edit) @2832   17 years Johan Enell Fixes #409
(edit) @2831   17 years Nicklas Nordborg Plugin configuration exporter now uses Integer parameter type for …
(edit) @2830   17 years Jari Häkkinen Fixed inconsistencies with bioassay set spot view and exported data. …
(edit) @2829   17 years Nicklas Nordborg Fixed incorrect permissions for plugin configuration exporter.
(edit) @2828   17 years Martin Svensson Fixes #336 Install common file formats with main installation. Problem …
(edit) @2827   17 years Nicklas Nordborg Updated requested permissions for export plugins
(edit) @2824   17 years Jari Häkkinen Added BioAssaySetExporter? class.
(edit) @2803   17 years Nicklas Nordborg Changed decscription for default error handling to make it easier to …
(edit) @2778   17 years Nicklas Nordborg Fixes #401: Filter plugin - failed to correctly apply filter on M …
(edit) @2759   17 years Martin Svensson Fixes #335 Plugins for importing/exporting plugin configurations
(edit) @2755   17 years Martin Svensson References #335. Backup for the weekend.Plugins not quite ready yet.
(edit) @2751   17 years Nicklas Nordborg Fixes #313: Error handling in import plugins
(edit) @2749   17 years Nicklas Nordborg Fixed bug that caused Lowess and Median normalizations to throw …
(edit) @2747   17 years Johan Enell Merged log:branches/2.0.1#2684:2740 to trunk.
(edit) @2745   17 years Nicklas Nordborg Fixes #354: Copy transformation
(edit) @2738   17 years Nicklas Nordborg Fixes #295: Filter on selected bioassays
(edit) @2733   17 years Nicklas Nordborg Fixes #316: Add support for color coding in data tables
(edit) @2727   17 years Johan Enell Fixed typo in getBase1Columns fixes #393
(edit) @2726   17 years Nicklas Nordborg
(edit) @2722   17 years Nicklas Nordborg Fixes #220: Plugin permissions
(edit) @2719   17 years Martin Svensson References #335. The first part of a plugin configuration importer. No …
(edit) @2696   17 years Martin Svensson References #335 Export plugin for plugin configurations. Saves the …
(edit) @2694   17 years Nicklas Nordborg Fixes #201, #370 and #371 * Experiment directory * Hyperlink to …
(edit) @2691   17 years Nicklas Nordborg Fixes #366: Batch upload using zip-files
(edit) @2690   17 years Johan Enell Merged log:branches/2.0#2618:2688 from branch 2.0 to trunk.
(edit) @2689   17 years Nicklas Nordborg References #366: Batch upload using zip-files Added plugin for zip …
(edit) @2680   17 years Martin Svensson References #335 A beginning of a PluginConfigurationExporter?.
(edit) @2679   17 years Nicklas Nordborg The AbstractFlatFileImporter?.requiresConfiguration() now returns true …
(edit) @2673   17 years Nicklas Nordborg Fixes #169: Use formulas for creating extra values Also added plugin …
(edit) @2669   17 years Nicklas Nordborg Fixes #342 and #344: Display extra values in plot tool and tables, etc.
(edit) @2664   17 years Nicklas Nordborg References #342, #344 and #169 Extra values are now displayed in a …
(edit) @2655   17 years Nicklas Nordborg Fixes #301: Better GUI for defining file formats
(edit) @2611   17 years Johan Enell Fixex #264
(edit) @2607   17 years Nicklas Nordborg Fixed NullPointerException? in configure() method
(edit) @2606   17 years Nicklas Nordborg Removed non-existing email address from plugins.
(edit) @2565   17 years Nicklas Nordborg Pad plate names with 0 instead of space since Postgres ignores spaces …
(edit) @2561   17 years Nicklas Nordborg Made some optimizations to the Lowess normalization. Arrays get a size …
(edit) @2550   17 years Johan Enell made some major design changes looks a little bit better now
(edit) @2547   17 years Johan Enell exports annotations
(edit) @2545   17 years Nicklas Nordborg Now handles the case with a null reporter correctly
(edit) @2544   17 years Nicklas Nordborg Fixed index problem when linking to plates/wells (use 0-based instead …
(edit) @2543   17 years Nicklas Nordborg Let superclass handle error reporting
(edit) @2541   17 years Nicklas Nordborg Better error reportering which include line number in most error messages
(edit) @2521   17 years Johan Enell supports annotation parameter
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