source: trunk/src/plugins

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Diff Rev Age Author Log Message
(edit) @4383   15 years Martin Svensson Fixed javadoc warnings
(edit) @4382   15 years Nicklas Nordborg Fixes #1069: New mode for Import reporters to reporterlist - Add …
(edit) @4380   15 years Nicklas Nordborg Fixes #1064: Add support for dry-run to the plug-in system
(edit) @4372   15 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4371   15 years Nicklas Nordborg Merged patch release 2.7.2 to the trunk.
(edit) @4366   15 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4358   15 years Nicklas Nordborg Fixes #1075: Lowess normaliztion fails on trunk but works on latest …
(edit) @4356   15 years Nicklas Nordborg Fixes #1072: Core plug-in versions should follow BASE versions
(edit) @4347   15 years Nicklas Nordborg Merged patch release 2.7.1 to the trunk
(edit) @4340   15 years Nicklas Nordborg Fixes #1054: Make it possible for the annotation importer to identify …
(edit) @4337   15 years Nicklas Nordborg Fixes #1052: Core analysis plug-ins need to be aware of bioassaysets …
(edit) @4325   15 years Nicklas Nordborg Fixes #1038: Provide manual parameter for 'spotsize' in GAL exporter
(edit) @4316   15 years Jari Häkkinen Removed obsolete/stray code.
(edit) @4304   15 years Nicklas Nordborg Fixes #1027: Annotation importer should be able to remove annotations
(edit) @4281   15 years Jari Häkkinen Removed potentially dangerous static declaration.
(edit) @4280   15 years Jari Häkkinen Fixes #1017. 1-channel median normalizarion added.
(edit) @4266   15 years Nicklas Nordborg Fixes #943: Base1PluginExecuter should import reporterlists
(edit) @4257   15 years Nicklas Nordborg References #1009: Link from array design to job that imported the …
(edit) @4256   15 years Nicklas Nordborg References #974: Link from raw bioassay to job that imported the raw …
(edit) @4247   15 years Nicklas Nordborg Fixes #1003: Illumina raw data importer – Enhance feature mismatch …
(edit) @4246   15 years Nicklas Nordborg Fixes #968: Raw data importer – Enhance feature mismatch error handling
(edit) @4241   15 years Nicklas Nordborg Fixes #994: Create GAL export plug-in for array designs
(edit) @4240   15 years Nicklas Nordborg Fixes #999: PrintMapImporter? should import feature diameter from TAM …
(edit) @4239   15 years Nicklas Nordborg References #994: Create GAL export plug-in for array designs Added …
(edit) @4235   15 years Nicklas Nordborg Fixes #996: MEV can't open data files that has a missing value in the …
(edit) @4232   15 years Nicklas Nordborg Merged patch release 2.6.2 to the trunk. Delta 2.6.2 - 2.6.1
(edit) @4195   15 years Nicklas Nordborg Merged patch release 2.6.1 to the trunk.
(edit) @4145   15 years Nicklas Nordborg References #909: Move some static fields from AbstractFlatFileImporter? …
(edit) @4132   15 years Nicklas Nordborg Fixes #926: Update IlluminaRawDataImporter? to set the …
(edit) @4124   15 years Nicklas Nordborg Fixes #915: NullPointerException? when a raw data type is missing Use …
(edit) @4121   15 years Nicklas Nordborg Fixes #916: Base1PluginExecuter commits transaction even in case of a …
(edit) @4120   15 years Nicklas Nordborg References #636: Kill a running job All core plug-ins can now be …
(edit) @4119   15 years Nicklas Nordborg References #892: Abort long-running queries Implemented a way to …
(edit) @4118   15 years Nicklas Nordborg References #636: Kill a running job Implemented support for …
(edit) @4116   15 years Martin Svensson Fixes #914 Make PluginConfigurationImporter? smarter
(edit) @4115   15 years Martin Svensson Fixes #912 Plugin auto-install can not perform import when not all …
(edit) @4107   15 years Nicklas Nordborg References #909: Move some static fields from AbstractFlatFileImporter? …
(edit) @4102   15 years Nicklas Nordborg Fixes #905: AbstractFlatFileParser? aborts parsing if a parseHeaders() …
(edit) @4101   15 years Nicklas Nordborg Fixes #904: Subclasses of AbstractFlatFileImporter? should be able to …
(edit) @4097   15 years Nicklas Nordborg Fixes #900: Verify that multiple raw data spots on the same raw …
(edit) @4095   15 years Johan Enell Merged patch release 2.5.1 to the trunk. Delta 2.5 - 2.5.1
(edit) @4093   15 years Johan Enell Reverted to revision r4089
(edit) @4092   15 years Johan Enell Merged from 2.5.1 Correct
(edit) @4091   15 years Johan Enell Merged from 2.5.1
(edit) @4090   15 years Johan Enell Merged patch release 2.5.1 to the trunk. Delta 2.5.1 - 2.5
(edit) @4084   15 years Nicklas Nordborg Fixes #895: Add serialVersionUID to all classes that need it but …
(edit) @4083   15 years Nicklas Nordborg References #894: Support for array designs with other feature …
(edit) @4080   15 years Nicklas Nordborg References #894: Support for array designs with other feature …
(edit) @4078   15 years Nicklas Nordborg References #636: Kill a running job * Signals are now working with …
(edit) @4076   15 years Martin Svensson Fixes #879 Add column holding the filename of last file used for …
(edit) @4074   15 years Nicklas Nordborg References #636: Kill a running job Infrastructure is now in place. …
(edit) @4073   15 years Nicklas Nordborg References #636: Kill a running job Infrastructure for signal …
(edit) @4069   15 years Nicklas Nordborg References #880: Corrected @since annotation (=2.6)
(edit) @4068   15 years Nicklas Nordborg Fixes #880: Exclude reporters in Lowess
(edit) @4062   15 years Nicklas Nordborg Fixes #837: Lowess plugin. Error: Sum of weigths in line_fit is not …
(edit) @4061   15 years Nicklas Nordborg Fixes #838: Change default value of Blockgroup size to 0 in Lowess
(edit) @4044   15 years Jari Häkkinen Addresses #693. Removed references to plain matrix in GUI.
(edit) @4043   15 years Jari Häkkinen Fixes #593.
(edit) @4040   15 years Martin Svensson Fixes #847 Most of the missing javadocs tags have been added in the …
(edit) @4037   15 years Johan Enell Fixes #861
(edit) @4034   15 years Martin Svensson References #847 Updated some javadocs. Added some missing tags.
(edit) @4031   15 years Nicklas Nordborg Removed debug output.
(edit) @4015   15 years Nicklas Nordborg References #848: Removed unused import
(edit) @4014   15 years Nicklas Nordborg Fixes #848: Annotation importer should not require role-based WRITE …
(edit) @3994   15 years Johan Enell Merged patch release 2.4.6 to the trunk. Delta 2.4.6 - 2.5
(edit) @3979   15 years Nicklas Nordborg Fixes #828: Raw data importer should be able to set annotations on the …
(edit) @3889   15 years Nicklas Nordborg References #411: Extending compressed file support and storage …
(edit) @3887   15 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Median-ratio …
(edit) @3879   15 years Nicklas Nordborg Fixes #797: Enhance performance for LOWESS and Medin-ratio plug-ins
(edit) @3878   15 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Median-ratio …
(edit) @3877   15 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Medin-ratio …
(edit) @3857   15 years Jari Häkkinen Merged patch release 2.4.4 to the trunk. Delta 2.4.4 - 2.4.3
(edit) @3846   15 years Martin Svensson References #492 Copying webservices into trunk
(edit) @3820   15 years Nicklas Nordborg Merged branches/filedb into trunk.
(edit) @3789   15 years Johan Enell Merged the 2.4.3 release log:branches/2.4-stable#3771:3788
(edit) @3775   15 years Johan Enell Merged the 2.4.2 release log:branches/2.4-stable#3694:3770
(edit) @3732   15 years Martin Svensson References #733 The PluginConfigurationImporter? class can be used …
(edit) @3725   15 years Jari Häkkinen Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
(edit) @3720   15 years Martin Svensson References #733. The PluginConfigurationImporter? can now import a …
(edit) @3705   15 years Peter Johansson refs #639
(edit) @3679   15 years Jari Häkkinen Changing the pesky "a (ä) character to a.
(edit) @3675   15 years Jari Häkkinen Fixing copyright statements. Fixing svn properties.
(edit) @3668   15 years Martin Svensson Fixes #724 Nullpointer exception when 'overwrite' is not set in …
(edit) @3655   16 years Nicklas Nordborg Fixes #720: Progress reporter when emptying trashcan
(edit) @3648   16 years Peter Johansson refs #639 removing the exportPlainMatrix method.
(edit) @3646   16 years Nicklas Nordborg References #451: Zipped download Fixed test program and added it to …
(edit) @3645   16 years Peter Johansson refs #639 stupid version of exportPureMatrix method that simply …
(edit) @3644   16 years Nicklas Nordborg Fixes #716: Plugin configuration import should be able ot set the …
(edit) @3643   16 years Nicklas Nordborg Fixes #451: Zipped download Added user and plug-in developer documentation
(edit) @3641   16 years Nicklas Nordborg References #451: Zipped download Major redesign of the packing …
(edit) @3639   16 years Johan Enell Fixes #714
(edit) @3638   16 years Nicklas Nordborg Fixes #713: Differences in the configuration file from base1
(edit) @3637   16 years Nicklas Nordborg Fixes #710: Allow subclasses to AbstractFlatFileParser? to participate …
(edit) @3632   16 years Johan Enell Fixes #713
(edit) @3628   16 years Nicklas Nordborg References #625: PrintMapFlatFileImporter?.isInContext now checks if …
(edit) @3626   16 years Nicklas Nordborg Fixes #486: Import raw data from the Illumina platform
(edit) @3622   16 years Johan Enell Fixes #700, #590
(edit) @3617   16 years Nicklas Nordborg Fixes #703: Error message when loading invalid XML files doesn't …
(edit) @3616   16 years Nicklas Nordborg References #698: Fix Javadoc warnings Removed all existing warnings. …
(edit) @3615   16 years Nicklas Nordborg Fixes #691: Make LowessNormalization? and MedianRatioNormalization? …
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