source: trunk/src/plugins

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Diff Rev Age Author Log Message
(edit) @4631   14 years Nicklas Nordborg Fixes #1167: Base1PluginExecutor should handle reporter-id=0 as null …
(edit) @4629   14 years Nicklas Nordborg References #1162: Raw bioassay importer fails with …
(edit) @4626   14 years Nicklas Nordborg Fixes #1164: Reporter importer plug-in displays 'Reporter ID' when …
(edit) @4622   14 years Nicklas Nordborg Fixes #1162: Raw bioassay importer fails with …
(edit) @4615   14 years Nicklas Nordborg References #1159: Annotation importer should detect non-existing …
(edit) @4614   14 years Nicklas Nordborg Fixes #1159: Annotation importer should detect non-existing column mappings
(edit) @4606   14 years Martin Svensson Fixes #1152 Improve transaction handling in Base1PluginExecuter. There …
(edit) @4605   14 years Nicklas Nordborg Merged patch release 2.8.4 to the trunk
(edit) @4598   14 years Nicklas Nordborg References #1145: Make the generic raw data importer support batch …
(edit) @4597   14 years Martin Svensson Fixes #1142 Lack of permission when trying to write to an item or use …
(edit) @4595   14 years Martin Svensson Fixes #1142 Batch importer plug-ins should handle lack of USE …
(edit) @4594   14 years Nicklas Nordborg Fixes #1145: Make the generic raw data importer support batch import
(edit) @4585   14 years Nicklas Nordborg Merged patch release 2.8.3 to the trunk.
(edit) @4569   14 years Nicklas Nordborg Fixes #1134: Raw bioassays are available for inclusion in root …
(edit) @4551   14 years Nicklas Nordborg Fixes #1127: Batch import: Problem importing labeled extracts - …
(edit) @4550   14 years Nicklas Nordborg Fixes #1030: Batch importer may mix lookup for scanners and print robots
(edit) @4537   14 years Nicklas Nordborg Merged patch release 2.8.2 to the trunk
(edit) @4532   14 years Nicklas Nordborg Reverting changes from [4529] to avoid conflicts when merging 2.8.2 …
(edit) @4529   14 years Jari Häkkinen Addresses #1124. The index counter was not updated properly for number …
(edit) @4527   14 years Nicklas Nordborg Fixes #1112: Create new items with project default properties from …
(edit) @4525   14 years Nicklas Nordborg References #425: Store the character encoding for text files Adding …
(edit) @4523   14 years Nicklas Nordborg References #425: Store the character encoding for text files Export …
(edit) @4521   14 years Nicklas Nordborg References #425: Store the character encoding for text files "Test …
(edit) @4513   14 years Jari Häkkinen Addresses #1106. Missed to change reference wherefrom retrive GPLv3 …
(edit) @4480   14 years Jari Häkkinen Addresses #1106. Moving to GPLv3 in chunked commits.
(edit) @4451   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4449   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items Do …
(edit) @4447   14 years Nicklas Nordborg References #1069: New mode for Import reporters to reporterlist - Add …
(edit) @4442   14 years Nicklas Nordborg Fixes #1103: Give more examples in description for "Date format" …
(edit) @4434   14 years Nicklas Nordborg References #1028 :Plug-in for batch upload/modification of items …
(edit) @4430   14 years Jari Häkkinen Corrected minor cut and paste error.
(edit) @4428   14 years Nicklas Nordborg Fixes #1100: Remove unnecessary @SupressWarnings? And removed some …
(edit) @4426   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4423   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4414   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items No …
(edit) @4413   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items Made …
(edit) @4412   14 years Nicklas Nordborg Fixes #1090: Import plug-ins ignores selected character set when …
(edit) @4408   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4383   14 years Martin Svensson Fixed javadoc warnings
(edit) @4382   14 years Nicklas Nordborg Fixes #1069: New mode for Import reporters to reporterlist - Add …
(edit) @4380   14 years Nicklas Nordborg Fixes #1064: Add support for dry-run to the plug-in system
(edit) @4372   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4371   14 years Nicklas Nordborg Merged patch release 2.7.2 to the trunk.
(edit) @4366   14 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4358   14 years Nicklas Nordborg Fixes #1075: Lowess normaliztion fails on trunk but works on latest …
(edit) @4356   14 years Nicklas Nordborg Fixes #1072: Core plug-in versions should follow BASE versions
(edit) @4347   14 years Nicklas Nordborg Merged patch release 2.7.1 to the trunk
(edit) @4340   14 years Nicklas Nordborg Fixes #1054: Make it possible for the annotation importer to identify …
(edit) @4337   14 years Nicklas Nordborg Fixes #1052: Core analysis plug-ins need to be aware of bioassaysets …
(edit) @4325   14 years Nicklas Nordborg Fixes #1038: Provide manual parameter for 'spotsize' in GAL exporter
(edit) @4316   14 years Jari Häkkinen Removed obsolete/stray code.
(edit) @4304   14 years Nicklas Nordborg Fixes #1027: Annotation importer should be able to remove annotations
(edit) @4281   14 years Jari Häkkinen Removed potentially dangerous static declaration.
(edit) @4280   14 years Jari Häkkinen Fixes #1017. 1-channel median normalizarion added.
(edit) @4266   14 years Nicklas Nordborg Fixes #943: Base1PluginExecuter should import reporterlists
(edit) @4257   14 years Nicklas Nordborg References #1009: Link from array design to job that imported the …
(edit) @4256   14 years Nicklas Nordborg References #974: Link from raw bioassay to job that imported the raw …
(edit) @4247   14 years Nicklas Nordborg Fixes #1003: Illumina raw data importer – Enhance feature mismatch …
(edit) @4246   14 years Nicklas Nordborg Fixes #968: Raw data importer – Enhance feature mismatch error handling
(edit) @4241   14 years Nicklas Nordborg Fixes #994: Create GAL export plug-in for array designs
(edit) @4240   14 years Nicklas Nordborg Fixes #999: PrintMapImporter? should import feature diameter from TAM …
(edit) @4239   14 years Nicklas Nordborg References #994: Create GAL export plug-in for array designs Added …
(edit) @4235   14 years Nicklas Nordborg Fixes #996: MEV can't open data files that has a missing value in the …
(edit) @4232   14 years Nicklas Nordborg Merged patch release 2.6.2 to the trunk. Delta 2.6.2 - 2.6.1
(edit) @4195   14 years Nicklas Nordborg Merged patch release 2.6.1 to the trunk.
(edit) @4145   14 years Nicklas Nordborg References #909: Move some static fields from AbstractFlatFileImporter?
(edit) @4132   14 years Nicklas Nordborg Fixes #926: Update IlluminaRawDataImporter? to set the …
(edit) @4124   14 years Nicklas Nordborg Fixes #915: NullPointerException? when a raw data type is missing Use …
(edit) @4121   14 years Nicklas Nordborg Fixes #916: Base1PluginExecuter commits transaction even in case of a …
(edit) @4120   14 years Nicklas Nordborg References #636: Kill a running job All core plug-ins can now be …
(edit) @4119   14 years Nicklas Nordborg References #892: Abort long-running queries Implemented a way to …
(edit) @4118   14 years Nicklas Nordborg References #636: Kill a running job Implemented support for …
(edit) @4116   14 years Martin Svensson Fixes #914 Make PluginConfigurationImporter? smarter
(edit) @4115   14 years Martin Svensson Fixes #912 Plugin auto-install can not perform import when not all …
(edit) @4107   14 years Nicklas Nordborg References #909: Move some static fields from AbstractFlatFileImporter?
(edit) @4102   14 years Nicklas Nordborg Fixes #905: AbstractFlatFileParser? aborts parsing if a parseHeaders() …
(edit) @4101   14 years Nicklas Nordborg Fixes #904: Subclasses of AbstractFlatFileImporter? should be able to …
(edit) @4097   14 years Nicklas Nordborg Fixes #900: Verify that multiple raw data spots on the same raw …
(edit) @4095   14 years Johan Enell Merged patch release 2.5.1 to the trunk. Delta 2.5 - 2.5.1
(edit) @4093   14 years Johan Enell Reverted to revision r4089
(edit) @4092   14 years Johan Enell Merged from 2.5.1 Correct
(edit) @4091   14 years Johan Enell Merged from 2.5.1
(edit) @4090   14 years Johan Enell Merged patch release 2.5.1 to the trunk. Delta 2.5.1 - 2.5
(edit) @4084   14 years Nicklas Nordborg Fixes #895: Add serialVersionUID to all classes that need it but …
(edit) @4083   14 years Nicklas Nordborg References #894: Support for array designs with other feature …
(edit) @4080   14 years Nicklas Nordborg References #894: Support for array designs with other feature …
(edit) @4078   14 years Nicklas Nordborg References #636: Kill a running job * Signals are now working with …
(edit) @4076   14 years Martin Svensson Fixes #879 Add column holding the filename of last file used for …
(edit) @4074   14 years Nicklas Nordborg References #636: Kill a running job Infrastructure is now in place. …
(edit) @4073   14 years Nicklas Nordborg References #636: Kill a running job Infrastructure for signal …
(edit) @4069   14 years Nicklas Nordborg References #880: Corrected @since annotation (=2.6)
(edit) @4068   14 years Nicklas Nordborg Fixes #880: Exclude reporters in Lowess
(edit) @4062   14 years Nicklas Nordborg Fixes #837: Lowess plugin. Error: Sum of weigths in line_fit is not …
(edit) @4061   14 years Nicklas Nordborg Fixes #838: Change default value of Blockgroup size to 0 in Lowess
(edit) @4044   14 years Jari Häkkinen Addresses #693. Removed references to plain matrix in GUI.
(edit) @4043   14 years Jari Häkkinen Fixes #593.
(edit) @4040   14 years Martin Svensson Fixes #847 Most of the missing javadocs tags have been added in the …
(edit) @4037   14 years Johan Enell Fixes #861
(edit) @4034   14 years Martin Svensson References #847 Updated some javadocs. Added some missing tags.
(edit) @4031   14 years Nicklas Nordborg Removed debug output.
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