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@3087
|
16 years |
Nicklas Nordborg |
Make sure DbControl? is closed
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@3085
|
16 years |
Nicklas Nordborg |
Fixes #440: Update to latest versions of 3rd-party software
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@3062
|
16 years |
Nicklas Nordborg |
References #262 and #340: Added possibility to save preset for …
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@3050
|
16 years |
Nicklas Nordborg |
References #440: Update to latest versions of 3rd-party software
…
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@2993
|
17 years |
Nicklas Nordborg |
Fixes #215: Incorrect use of DynamicSpotQuery? in table view, plot …
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@2992
|
17 years |
Johan Enell |
Merged log:branches/2.1#2846:2990 trunk.
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@2981
|
17 years |
Nicklas Nordborg |
Fixes #447: Fix javadoc warnings
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@2967
|
17 years |
Nicklas Nordborg |
References #440: Update to latest versions of 3rd-party software
…
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@2966
|
17 years |
Nicklas Nordborg |
References #440: Update to latest versions of 3rd-party software
…
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@2959
|
17 years |
Nicklas Nordborg |
References #412: Fix build.xml to make it more developer-friendly
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@2938
|
17 years |
Nicklas Nordborg |
Added performance test program
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@2935
|
17 years |
Nicklas Nordborg |
Test program now sets USE permission to plugins since the default has …
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@2933
|
17 years |
Nicklas Nordborg |
Fixes #172: Add externalId property to annotation type
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@2930
|
17 years |
Nicklas Nordborg |
Fixed compile error
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@2928
|
17 years |
Martin Svensson |
References #334. Updated the functions in core.
Not completely …
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@2925
|
17 years |
Jari Häkkinen |
Added svndigest:ignore property tom some items.
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@2906
|
17 years |
Martin Svensson |
References #334 Methods to get and set default items for a project. …
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@2854
|
17 years |
Nicklas Nordborg |
References #189: Allow export plugins to send download immediately to …
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@2817
|
17 years |
Nicklas Nordborg |
Fixes #416: Only show plugin-buttons when the logged in user has …
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@2815
|
17 years |
Nicklas Nordborg |
References #215: Incorrect use of DynamicSpotQuery? in table view, plot …
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@2751
|
17 years |
Nicklas Nordborg |
Fixes #313: Error handling in import plugins
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@2722
|
17 years |
Nicklas Nordborg |
Fixes #220: Plugin permissions
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@2702
|
17 years |
Nicklas Nordborg |
Fixed unclosed DbControl?.
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@2691
|
17 years |
Nicklas Nordborg |
Fixes #366: Batch upload using zip-files
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@2689
|
17 years |
Nicklas Nordborg |
References #366: Batch upload using zip-files
Added plugin for zip …
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@2681
|
17 years |
Nicklas Nordborg |
References #366: Batch upload using zip-files
Added utility class and …
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@2665
|
17 years |
Nicklas Nordborg |
Added a note about warning for an unclosed DbControl?
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@2664
|
17 years |
Nicklas Nordborg |
References #342, #344 and #169
Extra values are now displayed in a …
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@2657
|
17 years |
Martin Svensson |
References #220
1 Put the handle of plugin permissions into Keyring. …
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@2648
|
17 years |
Nicklas Nordborg |
References #351: External job server usage
Most functionality is now …
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@2646
|
17 years |
Martin Svensson |
References #220 Using the plugin permissions when a plugin is executed.
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@2641
|
17 years |
Nicklas Nordborg |
References #351: External job server usage
The core of the job agent …
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@2634
|
17 years |
Nicklas Nordborg |
References #351: External job server usage
Communincation with the …
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@2632
|
17 years |
Nicklas Nordborg |
References #351: External job server usage
Started to implement the …
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@2630
|
17 years |
Nicklas Nordborg |
Fixed compilatio errors in test program after change to JobAgent?
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@2628
|
17 years |
Jari Häkkinen |
Added svndigest:ignore property on test data files.
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@2627
|
17 years |
Nicklas Nordborg |
References #351: External job server usage
Added data layer class, …
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@2612
|
17 years |
Nicklas Nordborg |
Fixed batch files for running test programs in windows.
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@2606
|
17 years |
Nicklas Nordborg |
Removed non-existing email address from plugins.
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@2582
|
17 years |
Nicklas Nordborg |
|
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@2576
|
17 years |
Nicklas Nordborg |
Test formulas before experiments since formulas are used in the …
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@2569
|
17 years |
Nicklas Nordborg |
Use dye-swap labeled extracts for dye-swap hybridizations
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@2568
|
17 years |
Nicklas Nordborg |
Fixes #221: Create enhanced test procedure.
References #222: Automated …
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@2564
|
17 years |
Nicklas Nordborg |
Added Application.start(boolean) method that allows an application to …
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@2551
|
17 years |
Johan Enell |
corrected a nullpointer in the reader
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@2548
|
17 years |
Nicklas Nordborg |
Fixes #222: Automated test program suite for enhanced test procedure
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@2517
|
17 years |
Nicklas Nordborg |
References #170: Install now sets correct permissions for categories
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@2515
|
17 years |
Nicklas Nordborg |
References #170: Categorize annotation types
Most of the core and web …
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@2512
|
17 years |
Nicklas Nordborg |
Fixes #302: Running a plugin without a configuration should not be possible
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@2499
|
17 years |
Nicklas Nordborg |
Fixed problem with the new update method.
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@2494
|
17 years |
Nicklas Nordborg |
* Fixed problem with FlatFileParser? skipping every other section.
* …
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@2492
|
17 years |
Nicklas Nordborg |
Fixes #196: Transformation.newProduct should create child BioAssays? if …
|
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@2474
|
17 years |
Nicklas Nordborg |
Fixes #263: Update to latest versions of 3rd-party software
* Log4j: …
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@2459
|
17 years |
Nicklas Nordborg |
Fixes #242: Investigate if it would be better to preload features when …
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@2455
|
17 years |
Nicklas Nordborg |
Fixes #203: Infinite maxlength on StringParameterType?
* Added Text …
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@2451
|
17 years |
Johan Enell |
still some problems in reading the stdout
|
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@2450
|
17 years |
Johan Enell |
a small read bug in the plugin
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@2448
|
17 years |
Johan Enell |
moved the jarfile to classpath
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@2427
|
17 years |
Johan Enell |
some small changes for the base1 pluginexecuter test
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@2426
|
17 years |
Johan Enell |
a base1 plugin for testing the base1executer
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@2419
|
17 years |
Johan Enell |
BioAssay? can now list its raw bioassays
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@2409
|
17 years |
Johan Enell |
Fixes #202 - TestPrintMapFlatFileImporter? throws exception: Import …
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@2403
|
17 years |
Martin Svensson |
Fixes #207 Display the logged in user's permissions on items
|
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@2382
|
17 years |
Nicklas Nordborg |
Fixes #107 and #267: Any-to-any relation and Linking of files to items
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|
@2348
|
17 years |
Nicklas Nordborg |
Fixes #177: Store title and description of plugin parameters, not just …
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@2340
|
17 years |
Nicklas Nordborg |
Fixes #175: Move core plugins to a standalone compilation unit
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@2330
|
17 years |
Johan Enell |
pluginexecuter create a serial basefile
no annotations
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@2317
|
17 years |
Nicklas Nordborg |
Fixes #209: Add JepMapper? to FlatFileParser?
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@2314
|
17 years |
Nicklas Nordborg |
Fixes #260: Remove AffyFeatures? table
Also removed a lot of unused …
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@2306
|
17 years |
Jari Häkkinen |
Fixed subversion proterties.
|
|
|
@2304
|
17 years |
Jari Häkkinen |
Changed copyright statement.
|
|
|
@2286
|
17 years |
Nicklas Nordborg |
Updated the "roles" test suite to follow the latest specifications.
|
|
|
@2259
|
17 years |
Nicklas Nordborg |
'Roles' test program updated to follow the latest instructions.
|
|
|
@2253
|
17 years |
Nicklas Nordborg |
Added test code for user role
|
|
|
@2251
|
17 years |
Johan Enell |
can create a serial basefile
|
|
|
@2249
|
17 years |
Nicklas Nordborg |
Added first version of automated tests for roles. References #221 and #222.
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|
|
@2218
|
17 years |
Nicklas Nordborg |
Fixes #164: View all items in a project
Some updates to trashcan to …
|
|
|
@2213
|
17 years |
Nicklas Nordborg |
Fixes #97: Trashcan functionality
|
|
|
@2209
|
17 years |
Nicklas Nordborg |
Fixes #3: Update doesn't create indexes
|
|
|
@2207
|
17 years |
Nicklas Nordborg |
Started to add some database utility methods with the final goal to be …
|
|
|
@2205
|
17 years |
Johan Enell |
Base1PluginExecuter kan run executables and upload the files created …
|
|
|
@2203
|
17 years |
Nicklas Nordborg |
Fixes #1: column names in flatfile parser
Also changed migration so it …
|
|
|
@2198
|
17 years |
Nicklas Nordborg |
Fixes #208: Parameter visibility when running a plugin
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|
|
@2195
|
17 years |
Nicklas Nordborg |
Fixes #186 and #152
* The InteractivePlugin?.isInContext should return …
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|
@2193
|
17 years |
Nicklas Nordborg |
Fixed compilation error in test classes
|
|
|
@2188
|
17 years |
Nicklas Nordborg |
Check for null before printing to console
|
|
|
@2187
|
17 years |
Nicklas Nordborg |
Fixed bug in how TestExperiment? use IntensityCalculatorPlugin?
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|
|
@2150
|
17 years |
Nicklas Nordborg |
Added page for viewing scores for reporters in reporter list.
Added …
|
|
|
@2149
|
17 years |
Nicklas Nordborg |
First version of reporter list view
Updated ReporterFlatFileImporter? …
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|
@2147
|
17 years |
Nicklas Nordborg |
Added PathParameterType? to allow plugins to ask for a File or …
|
|
|
@2142
|
17 years |
Nicklas Nordborg |
Fixes #184: Running SQL/HQL after an update to the database.
|
|
|
@2104
|
17 years |
Nicklas Nordborg |
Added Formula, test code and updated UML diagram.
|
|
|
@2074
|
17 years |
Johan Enell |
changed the imports
|
|
|
@2061
|
17 years |
Johan Enell |
Made some corrections on Lowess
|
|
|
@2053
|
17 years |
Jari Häkkinen |
Added subversion properties to .xml files.
|
|
|
@2038
|
17 years |
Nicklas Nordborg |
Added SecondaryStorageController? and InternalStorageController?.
More …
|
|
|
@2036
|
17 years |
Johan Enell |
LowessNormalization? added
|
|
|
@2021
|
17 years |
Nicklas Nordborg |
Install can now update existing database and add missing items.
|
|
|
@1999
|
17 years |
Nicklas Nordborg |
Fixed ticket #79: LabeledExtract?.getHybridizations need a restriction …
|
|
|
@1979
|
17 years |
Nicklas Nordborg |
Fixed ticket #100: IllegalArgumentException? occurred calling getter of …
|
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