source: trunk/src

Revision Log Mode:


Legend:

Added
Modified
Copied or renamed
Diff Rev Age Author Log Message
(edit) @2641   16 years Nicklas Nordborg References #351: External job server usage The core of the job agent …
(edit) @2640   16 years Martin Svensson References #220 Improved the handling of permissions in PluginDefinitions?
(edit) @2638   16 years Martin Svensson Added copyright and license header
(edit) @2637   16 years Nicklas Nordborg Deprecated net.sf.basedb.clients.web.util.Values. Use …
(edit) @2636   16 years Martin Svensson Refereces #220. Separate permissions for plugindefinitions. The use of …
(edit) @2634   16 years Nicklas Nordborg References #351: External job server usage Communincation with the …
(edit) @2632   16 years Nicklas Nordborg References #351: External job server usage Started to implement the …
(edit) @2631   16 years Nicklas Nordborg References #351: External job server usage Update web pages for …
(edit) @2630   16 years Nicklas Nordborg Fixed compilatio errors in test program after change to JobAgent?
(edit) @2629   16 years Nicklas Nordborg References #351: External job server usage Added web pages for …
(edit) @2628   16 years Jari Häkkinen Added svndigest:ignore property on test data files.
(edit) @2627   16 years Nicklas Nordborg References #351: External job server usage Added data layer class, …
(edit) @2614   16 years Nicklas Nordborg References #332: Base 1 ID lookup is unstable Should fix the original …
(edit) @2613   16 years Nicklas Nordborg Fixes incorrect plate mappings installed by previous releases.
(edit) @2612   16 years Nicklas Nordborg Fixed batch files for running test programs in windows.
(edit) @2611   16 years Johan Enell Fixex #264
(edit) @2610   16 years Martin Svensson Filled up some javaDocs
(edit) @2607   16 years Nicklas Nordborg Fixed NullPointerException? in configure() method
(edit) @2606   16 years Nicklas Nordborg Removed non-existing email address from plugins.
(edit) @2603   16 years Johan Enell added some html.javaScriptEncode lines
(edit) @2601   16 years Martin Svensson Updated Javadoc and added missing imports for javadoc ref.
(edit) @2599   16 years Nicklas Nordborg Delete, Restore, Share and Export buttons now works in popup windows …
(edit) @2597   16 years Nicklas Nordborg References #331: Remember the last used item when creating new items …
(edit) @2596   16 years Nicklas Nordborg References #331: Remember the last used item when creating new items …
(edit) @2592   16 years Martin Svensson Made toolbar visible in popupwindows.
(edit) @2586   16 years Nicklas Nordborg Get all annotatable parents
(edit) @2582   16 years Nicklas Nordborg
(edit) @2581   16 years Nicklas Nordborg Replaced fixed array with map. Use printStackTrace() method to always …
(edit) @2576   16 years Nicklas Nordborg Test formulas before experiments since formulas are used in the …
(edit) @2575   16 years Nicklas Nordborg Copy function for plugin configurations now copy the parameters also.
(edit) @2572   16 years Nicklas Nordborg Fixes #327: Not all users are listed as members in a group
(edit) @2569   16 years Nicklas Nordborg Use dye-swap labeled extracts for dye-swap hybridizations
(edit) @2568   16 years Nicklas Nordborg Fixes #221: Create enhanced test procedure. References #222: Automated …
(edit) @2567   16 years Nicklas Nordborg Fixes #259: A job's progress doesn't get upadated when a job is …
(edit) @2565   16 years Nicklas Nordborg Pad plate names with 0 instead of space since Postgres ignores spaces …
(edit) @2564   16 years Nicklas Nordborg Added Application.start(boolean) method that allows an application to …
(edit) @2563   16 years Nicklas Nordborg Break after ten iterations to avoid endless loops
(edit) @2561   16 years Nicklas Nordborg Made some optimizations to the Lowess normalization. Arrays get a size …
(edit) @2557   16 years Martin Svensson Fixes #325 Corrupt page when viewing an biomaterial event
(edit) @2555   16 years Nicklas Nordborg Fixed ArrayDesignPlate?.getQuery() method to create a query that …
(edit) @2552   16 years Nicklas Nordborg Display times with seconds.
(edit) @2551   16 years Johan Enell corrected a nullpointer in the reader
(edit) @2550   16 years Johan Enell made some major design changes looks a little bit better now
(edit) @2548   16 years Nicklas Nordborg Fixes #222: Automated test program suite for enhanced test procedure
(edit) @2547   16 years Johan Enell exports annotations
(edit) @2546   16 years Johan Enell made getIdFromPath public
(edit) @2545   16 years Nicklas Nordborg Now handles the case with a null reporter correctly
(edit) @2544   16 years Nicklas Nordborg Fixed index problem when linking to plates/wells (use 0-based instead …
(edit) @2543   16 years Nicklas Nordborg Let superclass handle error reporting
(edit) @2542   16 years Nicklas Nordborg Fixed equals() method to behave as documented
(edit) @2541   16 years Nicklas Nordborg Better error reportering which include line number in most error messages
(edit) @2540   16 years Nicklas Nordborg Added line number info to FlatFileParser?.Line object
(edit) @2539   16 years Nicklas Nordborg * FlatFileParse? now ignores comment lines within the data section. * …
(edit) @2536   16 years Nicklas Nordborg Fixes #197: Submenu onClick
(edit) @2535   16 years Nicklas Nordborg Fixes #319: Spot images shown in experiment explorer do not seem to …
(edit) @2534   16 years Nicklas Nordborg Fixes problem with disappearing buttons and page width in Plot tool.
(edit) @2530   16 years Nicklas Nordborg Added caching for AnnotationTypeCategoryData? as specified
(edit) @2527   16 years Johan Enell missed a null check
(edit) @2526   16 years Martin Svensson Fixes #305 Delete recursively. Implemented for Directories, …
(edit) @2522   16 years Johan Enell Fixes #320
(edit) @2521   16 years Johan Enell supports annotation parameter
(edit) @2519   16 years Johan Enell will remove stdin/stdout if specified by config
(edit) @2518   16 years Nicklas Nordborg Fixes #170: Categorize annotation types
(edit) @2517   16 years Nicklas Nordborg References #170: Install now sets correct permissions for categories
(edit) @2515   16 years Nicklas Nordborg References #170: Categorize annotation types Most of the core and web …
(edit) @2514   16 years Nicklas Nordborg Fixes #127: Experiment explorer
(edit) @2512   16 years Nicklas Nordborg Fixes #302: Running a plugin without a configuration should not be possible
(edit) @2505   16 years Johan Enell plugin parameters removed only job parameters
(edit) @2504   16 years Nicklas Nordborg Fixed problem with execution time estimation.
(edit) @2502   16 years Nicklas Nordborg References #127: Experiment explorer Cleaned up and documented most …
(edit) @2499   16 years Nicklas Nordborg Fixed problem with the new update method.
(edit) @2498   16 years Nicklas Nordborg Fixes #314: Update documentation that shows code examples with …
(edit) @2497   16 years Nicklas Nordborg Better performance when creating a root bioassayset by fetching the …
(edit) @2496   16 years Nicklas Nordborg Deleted obsolete files related to the removed AffyFeatureData? class.
(edit) @2495   16 years Martin Svensson Fixes #173 Fully functional to create/delete HardwareType? and attach …
(edit) @2494   16 years Nicklas Nordborg * Fixed problem with FlatFileParser? skipping every other section. * …
(edit) @2492   16 years Nicklas Nordborg Fixes #196: Transformation.newProduct should create child BioAssays? if …
(edit) @2491   16 years Nicklas Nordborg Fixes #168: Use formulas in table listings of bioassay data
(edit) @2490   16 years Nicklas Nordborg References #127: Experiment explorer * Added annotations, support …
(edit) @2487   16 years Nicklas Nordborg References #127: Experiment explorer First version. A lot of the code …
(edit) @2485   16 years Johan Enell Position batcher added
(edit) @2484   16 years Martin Svensson Refrences #173 A hardware can now be attach to a Hybridization in the GUI.
(edit) @2483   16 years Nicklas Nordborg Fixes #309: count spots in bioassayset
(edit) @2481   16 years Johan Enell Base1PluginExecuter can now export data to base1 plug-in and import from it
(edit) @2480   16 years Martin Svensson Updated db schema_version and correct comments in BioMaterialEvent? and …
(edit) @2479   16 years Martin Svensson References #173 Made it possible to attach a Hardware item to …
(edit) @2476   16 years Martin Svensson Fixes #304 An empty list page is viewed when changing the …
(edit) @2474   16 years Nicklas Nordborg Fixes #263: Update to latest versions of 3rd-party software * Log4j: …
(edit) @2470   16 years Jari Häkkinen Fixed spelling for 'successfully'.
(edit) @2467   16 years Jari Häkkinen Fixed spelling errors.
(edit) @2464   16 years Martin Svensson References #268 Make biomaterials web gui more user friendly. Updated …
(edit) @2462   16 years Jari Häkkinen Fixed svn properties, and fixed copyright statement for …
(edit) @2461   16 years Jari Häkkinen Alphabetized the import of packages.
(edit) @2459   16 years Nicklas Nordborg Fixes #242: Investigate if it would be better to preload features when …
(edit) @2458   16 years Nicklas Nordborg Fixes #288: Plate name prefixes not added Also fixed space padding …
(edit) @2456   16 years Nicklas Nordborg TabControl? no longer remembers the last tab when creating new items …
(edit) @2455   16 years Nicklas Nordborg Fixes #203: Infinite maxlength on StringParameterType? * Added Text …
(edit) @2453   16 years Nicklas Nordborg The TabControl? taglib can now remember the last active tab on the last …
(edit) @2451   16 years Johan Enell still some problems in reading the stdout
(edit) @2450   16 years Johan Enell a small read bug in the plugin
Note: See TracRevisionLog for help on using the revision log.