source: trunk/src

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Diff Rev Age Author Log Message
(edit) @3190   16 years Johan Enell Merged log:branches/2.2.2#3116:3186 to trunk.
(edit) @3128   16 years Johan Enell Added javadoc
(edit) @3126   16 years Johan Enell Merged log:branches/2.2.1#3119:3123 trunk.
(edit) @3120   16 years Martin Svensson References #488. Update schema version without validating the measured …
(edit) @3115   16 years Jari Häkkinen Added text on how to stop unintentional migration.
(edit) @3112   16 years Jari Häkkinen Removed MeV export of an unneeded reporter column.
(edit) @3109   16 years Jari Häkkinen Blank experimental factor labels are propagated properly in MeV export.
(edit) @3108   16 years Johan Enell BASE1PluginExecuter uses BioAssaySetExporter? to create basefile
(edit) @3107   16 years Johan Enell Fixes #439
(edit) @3098   16 years Nicklas Nordborg References #10: Hierarchical clustering Added servlet for downloading …
(edit) @3097   16 years Nicklas Nordborg Fixed permission check problem that caused a query to return items the …
(edit) @3087   16 years Nicklas Nordborg Make sure DbControl? is closed
(edit) @3086   16 years Nicklas Nordborg Fixes #466: Remaining Quantity not display in extracts
(edit) @3085   16 years Nicklas Nordborg Fixes #440: Update to latest versions of 3rd-party software
(edit) @3082   16 years Martin Svensson Fixes #478 Plate Importer requests more permissions
(edit) @3079   16 years Nicklas Nordborg References #466: Remaining Quantity not display in extracts Fixed …
(edit) @3078   16 years Nicklas Nordborg References #459: Better error message if plugin jar can't be found …
(edit) @3077   16 years Nicklas Nordborg Fixes #431: Multiple tables from the Table taglib on the same HTML …
(edit) @3076   16 years Nicklas Nordborg Added better log messages to find out where unclosed DbControl:s are …
(edit) @3075   16 years Nicklas Nordborg Fixes #475: Error running RMAExpress plug-in to create new root bioassay.
(edit) @3074   16 years Nicklas Nordborg Fixes #476: "Import" button is not shown even if the user has …
(edit) @3073   16 years Nicklas Nordborg Fixes #477: Creating a child item in the same transaction as the …
(edit) @3072   16 years Nicklas Nordborg Fixed another path problem when running server on Windows
(edit) @3068   16 years Johan Enell Merged log:branches/2.1.2#2991:3059 to trunk
(edit) @3062   16 years Nicklas Nordborg References #262 and #340: Added possibility to save preset for …
(edit) @3052   16 years Martin Svensson Fixes #459 Better error message if plugin jar can't be found
(edit) @3051   16 years Nicklas Nordborg References #262 and #340: Some minor improvements and fixes
(edit) @3050   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @3049   16 years Nicklas Nordborg References #464: Permission denied when creting AnyToAny? I think this …
(edit) @3045   16 years Nicklas Nordborg References #262 and #340. The overview and validation is now complete. …
(edit) @3044   16 years Nicklas Nordborg Return each inherited annotation only once
(edit) @3035   16 years Johan Enell References #439
(edit) @3033   16 years Nicklas Nordborg References #262, #340: First prototype for experiment overview. Reads …
(edit) @3030   16 years Nicklas Nordborg Fixed some problems with loading array slide and hybiridization in one …
(edit) @3028   16 years Nicklas Nordborg Fixed number parsing problems with int/long and double/float
(edit) @3023   16 years Nicklas Nordborg Fixes #311: Allow parsing of numbers with different locale settings
(edit) @3015   16 years Nicklas Nordborg Fixes #405: Highlight function in plot tool
(edit) @3013   16 years Martin Svensson Fixes #98 "Excluded" items are still included if a list is exported
(edit) @3012   16 years Martin Svensson References #444.Added the check of existing path for this plugin too.
(edit) @3011   16 years Martin Svensson Fixes #444 Plugins should check that they are allowed to …
(edit) @3004   16 years Martin Svensson Fixes #374 Restoring a Bioassayset or Transformation restores all …
(edit) @2998   16 years Nicklas Nordborg References #215: Incorrect use of DynamicSpotQuery?... Fixed problem …
(edit) @2993   16 years Nicklas Nordborg Fixes #215: Incorrect use of DynamicSpotQuery? in table view, plot …
(edit) @2992   16 years Johan Enell Merged log:branches/2.1#2846:2990 trunk.
(edit) @2981   16 years Nicklas Nordborg Fixes #447: Fix javadoc warnings
(edit) @2972   16 years Nicklas Nordborg References #383 and #412. Include some files from the misc directory …
(edit) @2967   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @2966   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @2962   16 years Nicklas Nordborg References #412: Fix build.xml to make it more developer-friendly …
(edit) @2960   16 years Nicklas Nordborg References #412: Fix build.xml to make it more developer-friendly Get …
(edit) @2959   16 years Nicklas Nordborg References #412: Fix build.xml to make it more developer-friendly
(edit) @2949   16 years Martin Svensson Fixes #334 Project default items
(edit) @2942   16 years Nicklas Nordborg Fixes #317: Display and enter dates in different formats
(edit) @2941   16 years Martin Svensson References #334. All default values can now be set when …
(edit) @2939   16 years Martin Svensson References #334. Set default values for some BasicItems? in a project.
(edit) @2938   16 years Nicklas Nordborg Added performance test program
(edit) @2937   16 years Nicklas Nordborg Fixed a windows bug with path separators
(edit) @2935   16 years Nicklas Nordborg Test program now sets USE permission to plugins since the default has …
(edit) @2933   16 years Nicklas Nordborg Fixes #172: Add externalId property to annotation type
(edit) @2932   16 years Nicklas Nordborg Fixes #140: Write documentation: 5e) Secondary file storage Also …
(edit) @2930   16 years Nicklas Nordborg Fixed compile error
(edit) @2929   16 years Nicklas Nordborg Fixes #298: Add administrator page for viewing disk usage statistics
(edit) @2928   16 years Martin Svensson References #334. Updated the functions in core. Not completely …
(edit) @2927   16 years Nicklas Nordborg References #298: Add administrator page for viewing disk usage …
(edit) @2925   16 years Jari Häkkinen Added svndigest:ignore property tom some items.
(edit) @2920   16 years Nicklas Nordborg PlateFlatFileImporter? needs access to PlateGeometries?
(edit) @2916   16 years Nicklas Nordborg References #348: Take ownership of items Framework is done. Used …
(edit) @2915   16 years Nicklas Nordborg Download servlet now sets a MIME type by checking the registered file …
(edit) @2914   16 years Nicklas Nordborg Download servlet now sets a MIME type by checking the registered file …
(edit) @2913   16 years Nicklas Nordborg Internal subdirectory is now generated taking year, week, day in week …
(edit) @2907   16 years Nicklas Nordborg Fixes #402: Add shortcut button for 'current item', 'current …
(edit) @2906   16 years Martin Svensson References #334 Methods to get and set default items for a project. …
(edit) @2905   16 years Nicklas Nordborg Added Metadata.getOwnableItems()
(edit) @2904   16 years Nicklas Nordborg Create sub-directories based on the date for uploaded files to avoid …
(edit) @2902   16 years Nicklas Nordborg Fixes #345: List all items owned by a user
(edit) @2900   16 years Nicklas Nordborg Fixed checking of already existing login and external ID for users.
(edit) @2899   16 years Nicklas Nordborg Fixes #241: Files that have been used for parameters to a job can't be …
(edit) @2898   16 years Nicklas Nordborg Fixes #346: If an item is used, get information about the items that …
(edit) @2894   16 years Nicklas Nordborg References #346: If an item is used, get information about the items …
(edit) @2892   16 years Nicklas Nordborg Fixes #403: Make Bioassays and Bioassay sets annotatable
(edit) @2891   16 years Nicklas Nordborg Fixed NullPointerException? when node is empty for entryIterator() method
(edit) @2890   16 years Nicklas Nordborg Missing filter columns now get an empty <td></td> to solve problem …
(edit) @2889   16 years Nicklas Nordborg Missing columns now get an empty <td></td> to solve problem with data …
(edit) @2884   16 years Martin Svensson References #397 Unused fields and exception handling.
(edit) @2876   16 years Martin Svensson References #397 Removed fields that are not used.
(edit) @2875   16 years Nicklas Nordborg Fixes #339: Protocol parameters
(edit) @2874   16 years Martin Svensson References #397 Checks that the whole offset was skipped.
(edit) @2873   16 years Martin Svensson References #397 Dead local store.
(edit) @2872   16 years Martin Svensson References #397 'Dead local store' fixed
(edit) @2871   16 years Martin Svensson References #397 Dead store to local variable
(edit) @2870   16 years Martin Svensson References #397 Method may fail to close database resource
(edit) @2868   16 years Nicklas Nordborg Fixes #189: Allow export plugins to send download immediately to …
(edit) @2867   16 years Martin Svensson References #397 The index of the parameters in PreparedStatement? …
(edit) @2866   16 years Martin Svensson References #397 Null pointer dereference
(edit) @2865   16 years Martin Svensson Fixed bug: Inconsistent synchronization of …
(edit) @2864   16 years Martin Svensson Fixed bug: Non-transient/non-serializable instance field in …
(edit) @2863   16 years Martin Svensson Fixed bug: Nullcheck of value previously dereferenced
(edit) @2862   16 years Martin Svensson Fixed bug: Null value is guaranteed to be dereferenced
(edit) @2860   16 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
(edit) @2857   16 years Nicklas Nordborg References #189: Allow export plugins to send download immediately to …
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