source: trunk/src

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Diff Rev Age Author Log Message
(edit) @3908   15 years Martin Svensson References #809 Updated javadoc
(edit) @3906   15 years Nicklas Nordborg Fixes #813: Postgres db-engine ignores schema information in …
(edit) @3905   15 years Nicklas Nordborg Fixes #810: Implement query options for Include.ANNOTATED and …
(edit) @3902   15 years Nicklas Nordborg Added svndigest:ignore to testdata directory
(edit) @3900   15 years Nicklas Nordborg Fixes #612: Add checks in the core so that unsaved objects are not …
(edit) @3899   15 years Nicklas Nordborg References #721: Store data in files instead of in the database …
(edit) @3898   15 years Nicklas Nordborg References #806: Experimental factor values display on Experiment page …
(edit) @3889   15 years Nicklas Nordborg References #411: Extending compressed file support and storage …
(edit) @3888   15 years Nicklas Nordborg References #707: Can't unlink items that have been put in the trashcan …
(edit) @3887   15 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Median-ratio …
(edit) @3886   15 years Martin Svensson Replaced old jar-file and updated classpaths
(edit) @3882   15 years Nicklas Nordborg References #808: Remove Thread.sleep() from HibernateUtil?.loadIterator …
(edit) @3879   15 years Nicklas Nordborg Fixes #797: Enhance performance for LOWESS and Medin-ratio plug-ins
(edit) @3878   15 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Median-ratio …
(edit) @3877   15 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Medin-ratio …
(edit) @3876   15 years Martin Svensson References #492 Tests for webservices completed. Fixed the bugs that …
(edit) @3875   15 years Nicklas Nordborg Fixes #806: Experimental factor values display on Experiment page can …
(edit) @3874   15 years Martin Svensson References #492 Creating tests for webservices
(edit) @3873   15 years Nicklas Nordborg References #721, fixes #789: Extended test program to include more …
(edit) @3871   15 years Nicklas Nordborg Fixes #595: Add option to stop a plug-in from beeing executed by the …
(edit) @3867   15 years Nicklas Nordborg References #721: Store data in files instead of in the database * …
(edit) @3861   15 years Martin Svensson References #492 Added Services for RawBioAssay? and ArrayDesign?. Each …
(edit) @3859   15 years Nicklas Nordborg References #789: Extend "Experiment overview" to check for problems …
(edit) @3858   15 years Nicklas Nordborg References #794: Additional fix needed in trunk due to API changes in …
(edit) @3857   15 years Jari Häkkinen Merged patch release 2.4.4 to the trunk. Delta 2.4.4 - 2.4.3
(edit) @3850   15 years Nicklas Nordborg References #788: Select project default platforms / variant The …
(edit) @3847   15 years Nicklas Nordborg Fixes #788: Select project default platforms / variant
(edit) @3846   15 years Martin Svensson References #492 Copying webservices into trunk
(edit) @3845   15 years Martin Svensson References #492 Copying webservices into trunk
(edit) @3843   15 years Martin Svensson References #492 Copying webservices into trunk
(edit) @3842   15 years Martin Svensson References #492 Copying webservices into trunk
(edit) @3837   15 years Nicklas Nordborg No longer implement the FilenameFilter? interface since it couldn't be …
(edit) @3835   15 years Nicklas Nordborg References #721. Updated documentation.
(edit) @3832   15 years Nicklas Nordborg References #364. * Test program now looks for the test plug-ins: …
(edit) @3824   15 years Nicklas Nordborg Fixes #802: Migration should attach data files to array design and raw …
(edit) @3820   15 years Nicklas Nordborg Merged branches/filedb into trunk.
(edit) @3815   15 years Martin Svensson Fixes #799. The same bug was found when BASE tries to look in the …
(edit) @3789   15 years Johan Enell Merged the 2.4.3 release log:branches/2.4-stable#3771:3788
(edit) @3784   15 years Nicklas Nordborg Fixes #655: Plugins -> defintions fails with 'illegal attempt to …
(edit) @3775   15 years Johan Enell Merged the 2.4.2 release log:branches/2.4-stable#3694:3770
(edit) @3765   15 years Martin Svensson References #364, Correct inconsistent variable/property 'plugin.dir' …
(edit) @3763   15 years Martin Svensson References #364, Added instructions how to make ant put …
(edit) @3761   15 years Martin Svensson Fixes #689 Increase 99 hits per page limit (list views). The limit is …
(edit) @3760   15 years Martin Svensson Fixes #364, Uses the existing JarClassLoader?, when reading/loading …
(edit) @3751   15 years Nicklas Nordborg References #411. Migration should now automatically compress files …
(edit) @3741   15 years Nicklas Nordborg Fixes #758: Store number of features in a database column of ArrayDesign?
(edit) @3737   15 years Nicklas Nordborg Added modified AffxFusion?.jar that can read from InputStream? for some …
(edit) @3733   15 years Martin Svensson References #364 The functionallity is more or less done. The internal …
(edit) @3732   15 years Martin Svensson References #733 The PluginConfigurationImporter? class can be used …
(edit) @3725   15 years Jari Häkkinen Merged patch release 2.4.1 to the trunk. Delta 2.4.1 - 2.4.
(edit) @3720   15 years Martin Svensson References #733. The PluginConfigurationImporter? can now import a …
(edit) @3719   15 years Nicklas Nordborg References #411: Most of the basic functionality is now in place and …
(edit) @3706   15 years Martin Svensson References #364 Started updating the GUI to support auto installation …
(edit) @3705   15 years Peter Johansson refs #639
(edit) @3704   15 years Martin Svensson References #364 Moved the PluginInfo? class to another package, added a …
(edit) @3700   15 years Martin Svensson References #364 The main functions in core is now done for this. A …
(edit) @3698   15 years Martin Svensson References #364 Automatic install non-core plugins. First check-in, …
(edit) @3683   15 years Jari Häkkinen Spelling.
(edit) @3680   15 years Nicklas Nordborg Removed explicit call to System.gc(). Better command line parameters …
(edit) @3679   15 years Jari Häkkinen Changing the pesky "a (ä) character to a.
(edit) @3678   15 years Nicklas Nordborg Require DTD files to be encoded in ISO-8859-1
(edit) @3675   15 years Jari Häkkinen Fixing copyright statements. Fixing svn properties.
(edit) @3670   15 years Nicklas Nordborg Included numbers with scientific notation in the test.
(edit) @3668   15 years Martin Svensson Fixes #724 Nullpointer exception when 'overwrite' is not set in …
(edit) @3667   15 years Nicklas Nordborg Display free memory before AND after System.gc().
(edit) @3666   15 years Nicklas Nordborg References #469: Added negative numbers to test case with dirty data
(edit) @3665   15 years Martin Svensson Fixes #514 Change permissions in Power User
(edit) @3664   15 years Nicklas Nordborg Fixes #722: Create DynamicReporterQuery?
(edit) @3663   15 years Nicklas Nordborg Measure performance for reporter migration.
(edit) @3661   15 years Nicklas Nordborg References #720: Progress reporter when emptying trashcan Progress …
(edit) @3659   15 years Nicklas Nordborg References #294: Performance testing Added framework for testing BASE …
(edit) @3657   15 years Nicklas Nordborg Migrate reporters first.
(edit) @3656   15 years Nicklas Nordborg Fixes #719: Add support for JEP if() function
(edit) @3655   15 years Nicklas Nordborg Fixes #720: Progress reporter when emptying trashcan
(edit) @3651   15 years Jari Häkkinen Fixed svn properties issues.
(edit) @3650   15 years Nicklas Nordborg Fixed performance problem with reporter migration. Added support for …
(edit) @3649   15 years Nicklas Nordborg Make sure list of formulas get loaded to avoid …
(edit) @3648   15 years Peter Johansson refs #639 removing the exportPlainMatrix method.
(edit) @3647   15 years Nicklas Nordborg Fixes #718: BioAssaySet? tries to calculate number of spots and …
(edit) @3646   15 years Nicklas Nordborg References #451: Zipped download Fixed test program and added it to …
(edit) @3645   15 years Peter Johansson refs #639 stupid version of exportPureMatrix method that simply …
(edit) @3644   15 years Nicklas Nordborg Fixes #716: Plugin configuration import should be able ot set the …
(edit) @3643   15 years Nicklas Nordborg Fixes #451: Zipped download Added user and plug-in developer documentation
(edit) @3642   15 years Nicklas Nordborg Fixes #715: Install should set same permission on plugin …
(edit) @3641   15 years Nicklas Nordborg References #451: Zipped download Major redesign of the packing …
(edit) @3640   15 years Johan Enell a plugin can have no parameters
(edit) @3639   15 years Johan Enell Fixes #714
(edit) @3638   15 years Nicklas Nordborg Fixes #713: Differences in the configuration file from base1
(edit) @3637   15 years Nicklas Nordborg Fixes #710: Allow subclasses to AbstractFlatFileParser? to participate …
(edit) @3635   15 years Nicklas Nordborg References #358: Better info from Migration tool Show log message …
(edit) @3634   15 years Nicklas Nordborg Fixes #573: Trim whitespace when checking for unique values
(edit) @3633   15 years Nicklas Nordborg References #574. Test program didn't report error properly
(edit) @3632   15 years Johan Enell Fixes #713
(edit) @3631   15 years Nicklas Nordborg Fixes #701: JarClassLoader? should be able to auto-reload based on timestamp
(edit) @3629   15 years Nicklas Nordborg Fixes #712, References #711
(edit) @3628   15 years Nicklas Nordborg References #625: PrintMapFlatFileImporter?.isInContext now checks if …
(edit) @3627   15 years Nicklas Nordborg References #709: Forgot to add predefined query
(edit) @3626   15 years Nicklas Nordborg Fixes #486: Import raw data from the Illumina platform
(edit) @3625   15 years Nicklas Nordborg Fixes #709: Install should install missing plug-in configurations when …
(edit) @3624   15 years Nicklas Nordborg Fixes #708: "NaN" and "Infinity" values in files causes SqlException?
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