source: trunk/src

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Diff Rev Age Author Log Message
(edit) @4044   14 years Jari Häkkinen Addresses #693. Removed references to plain matrix in GUI.
(edit) @4043   14 years Jari Häkkinen Fixes #593.
(edit) @4040   14 years Martin Svensson Fixes #847 Most of the missing javadocs tags have been added in the …
(edit) @4038   14 years Nicklas Nordborg Fixes #862: Web services server doesn't return exceptions from methods …
(edit) @4037   14 years Johan Enell Fixes #861
(edit) @4036   14 years Nicklas Nordborg Fixes #851: Migration doesn't transfer 'reportermap' wizzzard …
(edit) @4035   14 years Nicklas Nordborg Fixes #860: Migration should create File entries even if physical file …
(edit) @4034   14 years Martin Svensson References #847 Updated some javadocs. Added some missing tags.
(edit) @4033   14 years Martin Svensson Fixes #859 Downloading file from web services fails if the filename in …
(edit) @4032   14 years Nicklas Nordborg Fixes #850: SQL for checking schema version in BASE 1 should be …
(edit) @4031   14 years Nicklas Nordborg Removed debug output.
(edit) @4030   14 years Nicklas Nordborg Fixes #858: Display database name when starting initdb and updatedb scripts
(edit) @4028   14 years Nicklas Nordborg References #857. Updated documentation
(edit) @4026   14 years Martin Svensson References #847 Updated some javadocs. Complemented with tags for some …
(edit) @4025   14 years Nicklas Nordborg References #854: Extend test procedure for predefined roles Updated …
(edit) @4023   14 years Martin Svensson References #847 Updated some javadocs. Most of the thrown exceptions …
(edit) @4020   14 years Martin Svensson References #847 Updated some javadocs.
(edit) @4017   14 years Martin Svensson References #847 Updated some javadocs.
(edit) @4015   14 years Nicklas Nordborg References #848: Removed unused import
(edit) @4014   14 years Nicklas Nordborg Fixes #848: Annotation importer should not require role-based WRITE …
(edit) @4011   14 years Martin Svensson References #847 Updated some javadocs. Removed an exception, that is …
(edit) @4009   14 years Nicklas Nordborg References #822: Create a separate WS-client dist Use Apache …
(edit) @4008   14 years Nicklas Nordborg Fixes #846: Add query parameters to QueryOptions?
(edit) @4007   14 years Nicklas Nordborg References #806: Experimental factor values display on Experiment page …
(edit) @4006   14 years Nicklas Nordborg Fixes #844: File.isUsed() doesn't check if a file has been used in a …
(edit) @3999   14 years Nicklas Nordborg Fixes #842: PluginDefinition?.isUsed() throws exception
(edit) @3998   14 years Nicklas Nordborg References #825: Include items 'shared to me' by default The default …
(edit) @3994   14 years Johan Enell Merged patch release 2.4.6 to the trunk. Delta 2.4.6 - 2.5
(edit) @3993   14 years Martin Svensson References #827 Updated some javadoc to the new methods.
(edit) @3992   14 years Nicklas Nordborg Fixes #728: jobagent.sh should accept command status Also made the …
(edit) @3991   14 years Martin Svensson Fixes #827 Reporters can now be exported through web services. Two new …
(edit) @3989   14 years Nicklas Nordborg Fixes #836: Toolbar in the table taglib generates incomplete HTML
(edit) @3988   14 years Nicklas Nordborg Fixes #835: Include items 'shared to me' by default
(edit) @3986   14 years Nicklas Nordborg Fixes #833: Removing items in the analysis tree
(edit) @3985   14 years Martin Svensson Fixes #830
(edit) @3984   14 years Nicklas Nordborg References #827: Add more web services methods Added example code for …
(edit) @3983   14 years Nicklas Nordborg References #827: Add more web services methods * Added getById() …
(edit) @3980   14 years Nicklas Nordborg Fixes #829: Item not found: Annotation[new]
(edit) @3979   14 years Nicklas Nordborg Fixes #828: Raw data importer should be able to set annotations on the …
(edit) @3978   14 years Martin Svensson References #827 Created ReporterService? and a method to get the …
(edit) @3977   14 years Nicklas Nordborg References #827: Add more web services methods Added …
(edit) @3976   14 years Martin Svensson References #827 Added ExperimentService?.getReporterLists().
(edit) @3975   14 years Nicklas Nordborg References #827. Updated javadoc related to last check-in
(edit) @3974   14 years Nicklas Nordborg References #827: Add more web services methods Added Transferable and …
(edit) @3973   14 years Nicklas Nordborg References #827: Add more web services methods * Added services to …
(edit) @3972   14 years Nicklas Nordborg References #492: Web services Added ServicesUtil?.listToInfo() method …
(edit) @3964   14 years Nicklas Nordborg References #492: Web services Redesigned file download to work with …
(edit) @3962   14 years Nicklas Nordborg References #821: Split up core.aar Fixed classpath for test programs.
(edit) @3961   14 years Nicklas Nordborg Fixes #822.
(edit) @3960   14 years Nicklas Nordborg References #807 Added documentation for plug-in developers.
(edit) @3959   14 years Martin Svensson References #823 Added a serialVersionUID to the info classes that …
(edit) @3958   14 years Nicklas Nordborg References #822: Create a separate WS-client dist Added some more …
(edit) @3957   14 years Martin Svensson References #823 Info classes implement Serializable-interface. Added …
(edit) @3956   14 years Martin Svensson References #823 The *Info classes are now refactored. The property of …
(edit) @3955   14 years Nicklas Nordborg Renamed config to META-INF
(edit) @3954   14 years Nicklas Nordborg References #822: Create a separate WS-client dist
(edit) @3953   14 years Nicklas Nordborg
(edit) @3952   14 years Nicklas Nordborg Fixes #821: Split up core.aar
(edit) @3951   14 years Nicklas Nordborg References #821 and #823. Moved around info.* stuff to prepare for …
(edit) @3948   14 years Nicklas Nordborg References #746. * Fixes links going from javadoc to docbook. * …
(edit) @3941   14 years Martin Svensson Correct warnings in Javadoc
(edit) @3939   14 years Nicklas Nordborg References #492: Web services * Try to delete temp files generated …
(edit) @3933   14 years Nicklas Nordborg Fixes #655
(edit) @3929   14 years Jari Häkkinen Fixed typo.
(edit) @3927   14 years Nicklas Nordborg Fixes issue with compiling under Java 1.5
(edit) @3920   14 years Martin Svensson References #492 Creates a new OutputStream? for each upload and always …
(edit) @3919   14 years Martin Svensson References #492 Modified the download methods to eliminate the …
(edit) @3917   14 years Nicklas Nordborg Fixes #717: Make initdb, updatedb and other scripts accept a username
(edit) @3914   14 years Martin Svensson References #809 Documentation updated
(edit) @3911   14 years Nicklas Nordborg Fixes #811: Wildcard or regular expressions in raw data column …
(edit) @3910   14 years Nicklas Nordborg Fixes #814 and #815: Upgrade Postgres JDBC and Hibernate
(edit) @3908   14 years Martin Svensson References #809 Updated javadoc
(edit) @3906   14 years Nicklas Nordborg Fixes #813: Postgres db-engine ignores schema information in …
(edit) @3905   14 years Nicklas Nordborg Fixes #810: Implement query options for Include.ANNOTATED and …
(edit) @3902   14 years Nicklas Nordborg Added svndigest:ignore to testdata directory
(edit) @3900   14 years Nicklas Nordborg Fixes #612: Add checks in the core so that unsaved objects are not …
(edit) @3899   14 years Nicklas Nordborg References #721: Store data in files instead of in the database …
(edit) @3898   14 years Nicklas Nordborg References #806: Experimental factor values display on Experiment page …
(edit) @3889   14 years Nicklas Nordborg References #411: Extending compressed file support and storage …
(edit) @3888   14 years Nicklas Nordborg References #707: Can't unlink items that have been put in the trashcan …
(edit) @3887   14 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Median-ratio …
(edit) @3886   14 years Martin Svensson Replaced old jar-file and updated classpaths
(edit) @3882   14 years Nicklas Nordborg References #808: Remove Thread.sleep() from HibernateUtil?.loadIterator …
(edit) @3879   14 years Nicklas Nordborg Fixes #797: Enhance performance for LOWESS and Medin-ratio plug-ins
(edit) @3878   14 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Median-ratio …
(edit) @3877   14 years Nicklas Nordborg References #797: Enhance performance for LOWESS and Medin-ratio …
(edit) @3876   14 years Martin Svensson References #492 Tests for webservices completed. Fixed the bugs that …
(edit) @3875   14 years Nicklas Nordborg Fixes #806: Experimental factor values display on Experiment page can …
(edit) @3874   14 years Martin Svensson References #492 Creating tests for webservices
(edit) @3873   14 years Nicklas Nordborg References #721, fixes #789: Extended test program to include more …
(edit) @3871   14 years Nicklas Nordborg Fixes #595: Add option to stop a plug-in from beeing executed by the …
(edit) @3867   14 years Nicklas Nordborg References #721: Store data in files instead of in the database * …
(edit) @3861   14 years Martin Svensson References #492 Added Services for RawBioAssay? and ArrayDesign?. Each …
(edit) @3859   14 years Nicklas Nordborg References #789: Extend "Experiment overview" to check for problems …
(edit) @3858   14 years Nicklas Nordborg References #794: Additional fix needed in trunk due to API changes in …
(edit) @3857   14 years Jari Häkkinen Merged patch release 2.4.4 to the trunk. Delta 2.4.4 - 2.4.3
(edit) @3850   14 years Nicklas Nordborg References #788: Select project default platforms / variant The …
(edit) @3847   14 years Nicklas Nordborg Fixes #788: Select project default platforms / variant
(edit) @3846   14 years Martin Svensson References #492 Copying webservices into trunk
(edit) @3845   14 years Martin Svensson References #492 Copying webservices into trunk
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