source: trunk/src

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Diff Rev Age Author Log Message
(edit) @4383   15 years Martin Svensson Fixed javadoc warnings
(edit) @4382   15 years Nicklas Nordborg Fixes #1069: New mode for Import reporters to reporterlist - Add …
(edit) @4380   15 years Nicklas Nordborg Fixes #1064: Add support for dry-run to the plug-in system
(edit) @4379   15 years Nicklas Nordborg References #1082: Make it possible to re-enter parameters for a failed …
(edit) @4376   15 years Nicklas Nordborg Fixes #1066: Reset all filters functionality request
(edit) @4372   15 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4371   15 years Nicklas Nordborg Merged patch release 2.7.2 to the trunk.
(edit) @4366   15 years Nicklas Nordborg References #1028: Plug-in for batch upload/modification of items …
(edit) @4358   15 years Nicklas Nordborg Fixes #1075: Lowess normaliztion fails on trunk but works on latest …
(edit) @4357   15 years Nicklas Nordborg References #1072: Core plug-in versions should follow BASE versions …
(edit) @4356   15 years Nicklas Nordborg Fixes #1072: Core plug-in versions should follow BASE versions
(edit) @4355   15 years Nicklas Nordborg Fixes #1073: Store current plug-in version when running a job
(edit) @4348   15 years Nicklas Nordborg References #1038: Provide manual parameter for 'spotsize' in GAL …
(edit) @4347   15 years Nicklas Nordborg Merged patch release 2.7.1 to the trunk
(edit) @4341   15 years Nicklas Nordborg Fixes #1056: Disk usage does not seem to report disk usage properly …
(edit) @4340   15 years Nicklas Nordborg Fixes #1054: Make it possible for the annotation importer to identify …
(edit) @4339   15 years Nicklas Nordborg Fixes #1058: Metadata.getPropertyValue() fails to get value for the …
(edit) @4337   15 years Nicklas Nordborg Fixes #1052: Core analysis plug-ins need to be aware of bioassaysets …
(edit) @4336   15 years Martin Svensson Fixes #1049 Add the 'quadratic mean' to available Avg. method's for …
(edit) @4335   15 years Nicklas Nordborg References #1050: Add core support for storing analysed data in files …
(edit) @4334   15 years Nicklas Nordborg References #1050: Add core support for storing analysed data in files …
(edit) @4330   15 years Martin Svensson Fixes #1010 Display progress reporter for plug-ins that are executing …
(edit) @4327   15 years Martin Svensson References #1010 Using the SimpleProgressReporter? to get progress of …
(edit) @4326   15 years Nicklas Nordborg Fixes #1045. References #1016.
(edit) @4325   15 years Nicklas Nordborg Fixes #1038: Provide manual parameter for 'spotsize' in GAL exporter
(edit) @4323   15 years Nicklas Nordborg Fixes #1043: JarClassLoader?.getInstance() doesn't create a new class …
(edit) @4322   15 years Nicklas Nordborg Fixes #1042: Improve error handling in the extensions system
(edit) @4321   15 years Nicklas Nordborg Fixes #1041: ZipException?: error in opening zip file in JarClassLoader?
(edit) @4320   15 years Nicklas Nordborg References #1036: Implement 'service' extension point Now it is ready …
(edit) @4319   15 years Nicklas Nordborg Fixes #1040: Exceptions when stopping Tomcat
(edit) @4317   15 years Nicklas Nordborg Fixes #1022: Add support for using regular expressions in queries
(edit) @4316   15 years Jari Häkkinen Removed obsolete/stray code.
(edit) @4314   15 years Nicklas Nordborg Fixes #967: Assign the parent directory permissions to new …
(edit) @4312   15 years Nicklas Nordborg Fixes #981: Share all subdirectories and files when sharing a directory
(edit) @4311   15 years Nicklas Nordborg Fixes #1024: Allow users to select a specific job-agent when creating …
(edit) @4306   15 years Nicklas Nordborg References #1015: Add reporter list from tables that list …
(edit) @4305   15 years Nicklas Nordborg References #1015: Add reporter list from tables that list …
(edit) @4304   15 years Nicklas Nordborg Fixes #1027: Annotation importer should be able to remove annotations
(edit) @4302   15 years Nicklas Nordborg References #1016: Filter table using a reporter list I think this …
(edit) @4301   15 years Nicklas Nordborg References #1019: Reporter list manager - Create reporter list using …
(edit) @4299   15 years Nicklas Nordborg Fixes #1020: A reporter list should hold the number of reporters in it
(edit) @4298   15 years Nicklas Nordborg Merged pre-2.7-release to the trunk.
(edit) @4284   15 years Nicklas Nordborg Merged patch release 2.6.3 to the trunk. Delta: tags/2.6.3 - tags/2.6.2
(edit) @4281   15 years Jari Häkkinen Removed potentially dangerous static declaration.
(edit) @4280   15 years Jari Häkkinen Fixes #1017. 1-channel median normalizarion added.
(edit) @4278   15 years Nicklas Nordborg Fixes #1011: Select multiple alternatives for a filter with a …
(edit) @4277   15 years Nicklas Nordborg Fixes #1025: Add Hql.size() expression
(edit) @4275   15 years Nicklas Nordborg References #1011: Allow to select multiple alternatives for a filter …
(edit) @4272   15 years Nicklas Nordborg Fixes #1018: Make it possible to filter on null at the same time as a …
(edit) @4270   15 years Nicklas Nordborg Fixes #1018: Make it possible to filter on null at the same time as a …
(edit) @4267   15 years Nicklas Nordborg References #974. Revert accidental renaming of method in [4256]
(edit) @4266   15 years Nicklas Nordborg Fixes #943: Base1PluginExecuter should import reporterlists
(edit) @4265   15 years Nicklas Nordborg Fixes #1001: Plug-ins that use the 'execute immediately' option can't …
(edit) @4264   15 years Nicklas Nordborg References #436: Create extension system for the web application …
(edit) @4263   15 years Nicklas Nordborg References #933: Create extension points for some selected places in …
(edit) @4262   15 years Nicklas Nordborg References #933: Create extension points for some selected places in …
(edit) @4257   15 years Nicklas Nordborg References #1009: Link from array design to job that imported the …
(edit) @4256   15 years Nicklas Nordborg References #974: Link from raw bioassay to job that imported the raw …
(edit) @4255   15 years Jari Häkkinen Typo.
(edit) @4254   15 years Nicklas Nordborg Fixes #972: Assign job to experiment when the job is created The …
(edit) @4252   15 years Nicklas Nordborg Fixes #1006: Make it possible to search for missing annotations
(edit) @4251   15 years Nicklas Nordborg Fixes #965: Filtering the list – selection list vs. input box for …
(edit) @4250   15 years Nicklas Nordborg References #965: Filtering the list – selection list vs. input box for …
(edit) @4249   15 years Nicklas Nordborg Fixes #1005: Test programs should print out server information just …
(edit) @4248   15 years Nicklas Nordborg Fixes #1004: Upgrade Postgres JDBC driver to 8.3.603
(edit) @4247   15 years Nicklas Nordborg Fixes #1003: Illumina raw data importer – Enhance feature mismatch …
(edit) @4246   15 years Nicklas Nordborg Fixes #968: Raw data importer – Enhance feature mismatch error handling
(edit) @4243   15 years Nicklas Nordborg Fixes #920: Add support for aborting queries using a StatlessSession?
(edit) @4242   15 years Nicklas Nordborg Fixes #1000: SimpleExport? count items twice
(edit) @4241   15 years Nicklas Nordborg Fixes #994: Create GAL export plug-in for array designs
(edit) @4240   15 years Nicklas Nordborg Fixes #999: PrintMapImporter? should import feature diameter from TAM …
(edit) @4239   15 years Nicklas Nordborg References #994: Create GAL export plug-in for array designs Added …
(edit) @4237   15 years Nicklas Nordborg References #436: Create extension system for the web application …
(edit) @4236   15 years Nicklas Nordborg References #436: Create extension system for the web application …
(edit) @4235   15 years Nicklas Nordborg Fixes #996: MEV can't open data files that has a missing value in the …
(edit) @4234   15 years Nicklas Nordborg Fixes #932: Convert the MeV launcher to an extension MEV-related code …
(edit) @4233   15 years Nicklas Nordborg References #436: Create extension system for the web application …
(edit) @4232   15 years Nicklas Nordborg Merged patch release 2.6.2 to the trunk. Delta 2.6.2 - 2.6.1
(edit) @4222   15 years Nicklas Nordborg References #989: Add support for using extension classes in custom JSP …
(edit) @4221   15 years Nicklas Nordborg References #988: Add support for servlets in extensions The main …
(edit) @4220   15 years Nicklas Nordborg Fixes #955: Array slides – make test for barcode uniqueness
(edit) @4219   15 years Nicklas Nordborg References #986: Move example code for web services to the BASE …
(edit) @4218   15 years Nicklas Nordborg References #898: Move example code for plug-ins to the BASE plug-ins …
(edit) @4208   15 years Nicklas Nordborg References #436: Create extension system for the web application …
(edit) @4207   15 years Nicklas Nordborg References #436: Create extension system for the web application …
(edit) @4202   15 years Nicklas Nordborg References #436: Create extension system for the web application All …
(edit) @4198   15 years Nicklas Nordborg References #436: Create extension system for the web application …
(edit) @4196   15 years Nicklas Nordborg Fixes #952: Update MySQL JDBC driver to a newer version
(edit) @4195   15 years Nicklas Nordborg Merged patch release 2.6.1 to the trunk.
(edit) @4187   15 years Nicklas Nordborg Merged extensions branch into trunk
(edit) @4162   15 years Nicklas Nordborg References #937: Spelling of method name: Xml --> XML
(edit) @4160   15 years Nicklas Nordborg Fixes #937: Extend XMLUtil with methods that can validate an XML file …
(edit) @4145   15 years Nicklas Nordborg References #909: Move some static fields from AbstractFlatFileImporter?
(edit) @4143   15 years Nicklas Nordborg References #896: Stop generating too long URL:s The POST is now in …
(edit) @4142   15 years Nicklas Nordborg Fixes #931: Share items to EVERYONE without SHARE_TO_EVERYONE permission
(edit) @4141   15 years Nicklas Nordborg Fixes #929: An existing share to Everyone may block sharing an item to …
(edit) @4140   15 years Martin Svensson Fixes #889 Clicking "Help" throws a Python error. Changed an invalid link
(edit) @4139   15 years Nicklas Nordborg Fixed Javadoc warnings
(edit) @4138   15 years Nicklas Nordborg Fixes #928
(edit) @4136   15 years Nicklas Nordborg Format of progress output was incosistent
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