source: trunk

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Diff Rev Age Author Log Message
(edit) @2209   16 years Nicklas Nordborg Fixes #3: Update doesn't create indexes
(edit) @2207   16 years Nicklas Nordborg Started to add some database utility methods with the final goal to be …
(edit) @2206   16 years Martin Svensson Fixes #142. Changing Preference to S or XS prevents from Seeing …
(edit) @2205   16 years Johan Enell Base1PluginExecuter kan run executables and upload the files created …
(edit) @2204   16 years Martin Svensson Fixes #162. Install help texts in flexible way. Also a couple of …
(edit) @2203   16 years Nicklas Nordborg Fixes #1: column names in flatfile parser Also changed migration so it …
(edit) @2202   16 years Jari Häkkinen Removed schema change flag for RC1.2200.
(edit) @2201   16 years Jari Häkkinen Updated demo server.
(edit) @2200   16 years Jari Häkkinen Fixed spelling errors.
(edit) @2199   16 years Nicklas Nordborg Fixes #205: Directories are handled as selected even if they are …
(edit) @2198   16 years Nicklas Nordborg Fixes #208: Parameter visibility when running a plugin
(edit) @2197   16 years Nicklas Nordborg Fixes #194: Permission denied: Not allowed to use B
(edit) @2196   16 years Martin Svensson Fixes #103 Display name of current item in 'Set access permissions' dialog
(edit) @2195   16 years Nicklas Nordborg Fixes #186 and #152 * The InteractivePlugin?.isInContext should return …
(edit) @2194   16 years Nicklas Nordborg Fixes #192: Analysis plugins that adds data to an experiment can't …
(edit) @2193   16 years Nicklas Nordborg Fixed compilation error in test classes
(edit) @2192   16 years Nicklas Nordborg Fixes #135: Write documentation: 3c) Internals of the core API - …
(edit) @2191   16 years Martin Svensson Fixes #156 second part. Now it's possible to overwrite file if the …
(edit) @2190   16 years Nicklas Nordborg Fixes #182: Allow plugin parameters to use enumerations where one …
(edit) @2189   16 years Nicklas Nordborg Added option to display toolbars with or without images and/or text.
(edit) @2188   16 years Nicklas Nordborg Check for null before printing to console
(edit) @2187   16 years Nicklas Nordborg Fixed bug in how TestExperiment? use IntensityCalculatorPlugin?
(edit) @2186   16 years Nicklas Nordborg Fixes #85: Import plugins should specify filter for FileType? Also …
(edit) @2185   16 years Nicklas Nordborg Fixes #125: Create filtered bioassay sets
(edit) @2184   16 years Nicklas Nordborg Added filter image
(edit) @2183   16 years Nicklas Nordborg First version of filtering a bioassayset.
(edit) @2182   16 years Martin Svensson Made some minor improvments on the HelpExporter?- and HelpImporter? plugin.
(edit) @2181   16 years Jari Häkkinen Demo server updated.
(edit) @2180   16 years Jari Häkkinen Fixed cross references within doc and added info regarding MySQL 5.0
(edit) @2179   16 years Martin Svensson Fixes #178 Create plugin for importing help texts
(edit) @2178   16 years Nicklas Nordborg Fixed margin width of footnote page
(edit) @2177   16 years Nicklas Nordborg Bad links and popup window size
(edit) @2176   16 years Nicklas Nordborg Fixes first part of ticket #156: Creating a new file with the same …
(edit) @2175   16 years Nicklas Nordborg Fixed some IE related display anomalies Added some more icons
(edit) @2174   16 years Nicklas Nordborg Fixes #60: BioAssay? data export
(edit) @2173   16 years Nicklas Nordborg Fixed some vertical alignment problems of the new icons. Added icons …
(edit) @2172   16 years Martin Svensson Added option to create a new HelpItem? if the database doesn't contain …
(edit) @2171   16 years Nicklas Nordborg Fixes #43: New icons in web interface
(edit) @2170   16 years Martin Svensson Added a method to validate a XML-inputstream
(edit) @2169   16 years Nicklas Nordborg Fixes #148: Should read permission in BASE 1 be migrated as read/use …
(edit) @2168   16 years Nicklas Nordborg Made ExampleImporter? an AutoDetectingImporter?
(edit) @2167   16 years Nicklas Nordborg Fixes #193: Nullpointer exception when running an AutoDetectImporter? plugin
(edit) @2166   16 years Nicklas Nordborg Fixes #96 and #158: * Inherit annotations * Resizable annotation tab …
(edit) @2165   16 years Martin Svensson Change the export format for helptexts
(edit) @2164   16 years Nicklas Nordborg Fixes #171: Experimental factor for experiments
(edit) @2163   16 years Nicklas Nordborg Webclient is installed by net.sf.basedb.install.WebClient?
(edit) @2162   16 years Johan Enell It reads the configuration file but it doesnt store tha values
(edit) @2161   16 years Johan Enell createClient(...web...) was removed it is needed…
(edit) @2160   16 years Martin Svensson Added installation of HelpExporter? plugin
(edit) @2159   16 years Martin Svensson Fixes #179: Created plugin for exporting help texts
(edit) @2158   16 years Nicklas Nordborg Fixes #187: Add a New directory button to "Select directory" dialog
(edit) @2157   16 years Nicklas Nordborg Fixes #188: Readd the missing "Unload" button in Plugin definitions list
(edit) @2156   16 years Nicklas Nordborg Removed TODO from item that was done.
(edit) @2155   16 years Nicklas Nordborg Fixes #139: Write documentation: 5d) Analysis plug-ins Added another …
(edit) @2154   16 years Nicklas Nordborg Fixes #137: Write documentation 5b) Plug-ins for importing data Added …
(edit) @2153   16 years Nicklas Nordborg Classloader now ignores empty Class-Path attribute in the manifest file
(edit) @2152   16 years Nicklas Nordborg Fixed export function so it supports ReporterScore?
(edit) @2151   16 years Nicklas Nordborg Added documentation 6a) How to write plug-ins
(edit) @2150   16 years Nicklas Nordborg Added page for viewing scores for reporters in reporter list. Added …
(edit) @2149   16 years Nicklas Nordborg First version of reporter list view Updated ReporterFlatFileImporter?
(edit) @2148   16 years Nicklas Nordborg Changed copyright notice
(edit) @2147   16 years Nicklas Nordborg Added PathParameterType? to allow plugins to ask for a File or …
(edit) @2146   16 years Jari Häkkinen Added devevloper information regarding database schema changes.
(edit) @2145   16 years Jari Häkkinen Added a column in the download section indicating schema change.
(edit) @2144   16 years Jari Häkkinen Added a comment about postgresql update problems.
(edit) @2143   16 years Jari Häkkinen Added new revision to download 2.0RC1.2142
(edit) @2142   16 years Nicklas Nordborg Fixes #184: Running SQL/HQL after an update to the database.
(edit) @2141   16 years Jari Häkkinen Added downloads for all demo server versions including original RC1.
(edit) @2140   16 years Johan Enell config mathod created for Base1PluginExecuter
(edit) @2139   16 years Nicklas Nordborg Fixes #176: Running jobs with a project activated INCLUDES DATABASE …
(edit) @2138   16 years Nicklas Nordborg Fixes #180: Clear filter
(edit) @2137   16 years Nicklas Nordborg Fixes #124: Plot function for analysed data
(edit) @2136   16 years Johan Enell added some javadoc
(edit) @2135   16 years Jari Häkkinen Updated authors.
(edit) @2133   16 years Johan Enell corrected the counter
(edit) @2132   16 years Johan Enell Lowess is pinbased
(edit) @2131   16 years Nicklas Nordborg Replaced special JFreePlotServlet with the generic PlotServlet? which …
(edit) @2130   16 years Nicklas Nordborg New bioassays now get the same name as their parent bioassay or raw …
(edit) @2129   16 years Martin Svensson Fixes #161 Add support for showing help texts in the GUI
(edit) @2126   16 years Nicklas Nordborg Fixes #166 and #167: * Make IntensityCalculator? an InteractivePlugin?
(edit) @2125   16 years Nicklas Nordborg Fixes #145: Plugin parameters with no default value get the string …
(edit) @2122   16 years Nicklas Nordborg Fixed some tooltip texts
(edit) @2121   16 years Nicklas Nordborg Added gui for administrering help texts
(edit) @2120   16 years Johan Enell Median ratio is now pinbased
(edit) @2119   16 years Nicklas Nordborg Added simple validation of formulas using JavaScript?.
(edit) @2118   16 years Nicklas Nordborg Added some useful information (base version, browser, database …
(edit) @2116   16 years Nicklas Nordborg Plotting histogram is now working.
(edit) @2115   16 years Nicklas Nordborg Selecting a different directory now updates the path in the "Save as" …
(edit) @2114   16 years Nicklas Nordborg Fixes #165: Running updatedb.sh changes server settings
(edit) @2113   16 years Nicklas Nordborg Updated plot tool. It should now be possible to create scatter plots …
(edit) @2111   16 years Nicklas Nordborg Updated plot function
(edit) @2110   16 years Jari Häkkinen Forgot information about database upgrade.
(edit) @2109   16 years Jari Häkkinen Improved docs, and added information on how to upgrade existing BASE 2.
(edit) @2108   16 years Martin Svensson Added taglib file for base-help
(edit) @2107   16 years Nicklas Nordborg Added interface for administration of formulas.
(edit) @2106   16 years Nicklas Nordborg Formulas should use the getTitle() not getName() from formulas defined …
(edit) @2105   16 years Nicklas Nordborg Fixes ticket #155: Export of annotations does not work
(edit) @2104   16 years Nicklas Nordborg Added Formula, test code and updated UML diagram.
(edit) @2103   16 years Martin Svensson Fixes #141. When creating a new user the default quota is not preselected
(edit) @2102   16 years Nicklas Nordborg Added new list page for bioassay data. Removed all old pages from …
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