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Diff Rev Age Author Log Message
(edit) @3120   16 years Martin Svensson References #488. Update schema version without validating the measured …
(edit) @3117   16 years Jari Häkkinen Changed link to BASE (MeV) hacks site.
(edit) @3116   16 years Jari Häkkinen Bumped version number to 2.2.0. Added Micha to contribution list.
(edit) @3115   16 years Jari Häkkinen Added text on how to stop unintentional migration.
(edit) @3114   16 years Jari Häkkinen Cleaning.
(edit) @3113   16 years Jari Häkkinen Updated installation document.
(edit) @3112   16 years Jari Häkkinen Removed MeV export of an unneeded reporter column.
(edit) @3111   16 years Jari Häkkinen Added MeV to the list of 3rd party components and to the tools list.
(edit) @3110   16 years Jari Häkkinen Addresses #10 and #352. Unique temporary filenames used at client side.
(edit) @3109   16 years Jari Häkkinen Blank experimental factor labels are propagated properly in MeV export.
(edit) @3108   16 years Johan Enell BASE1PluginExecuter uses BioAssaySetExporter? to create basefile
(edit) @3107   16 years Johan Enell Fixes #439
(edit) @3106   16 years Jari Häkkinen Addresses #10 and #352. Removed hard coded indexes for datamatrix …
(edit) @3105   16 years Jari Häkkinen Addresses #10 and #352. MeV uses system tmp directory system properties.
(edit) @3104   16 years Martin Svensson References #146. Added help texts for view user
(edit) @3103   16 years Martin Svensson References #146. Modified the function of the toolbar that is used to …
(edit) @3102   16 years Jari Häkkinen Addresses #10 and #352. MeV jsp uses Servlet API to retrieve server …
(edit) @3101   16 years Jari Häkkinen Addresses #10 and #352. Fixed problem with non-appearing tool icons in MeV.
(edit) @3100   16 years Jari Häkkinen Addresses #10 and #352. Now actually using the bioassayset used to …
(edit) @3099   16 years Jari Häkkinen Moved max heap size tag to correct tag.
(edit) @3098   16 years Nicklas Nordborg References #10: Hierarchical clustering Added servlet for downloading …
(edit) @3097   16 years Nicklas Nordborg Fixed permission check problem that caused a query to return items the …
(edit) @3096   16 years Jari Häkkinen Addresses #10, #352, #365. First checkin for JWS use to launch MeV.
(edit) @3095   16 years Martin Svensson Fixed so the list page of plate mappings not are corrupt when user …
(edit) @3094   16 years Nicklas Nordborg Fixes #483: Add a direct start icon for export of bioassaysets in …
(edit) @3093   16 years Martin Svensson References #146. Added group.edit... helptexts and began at role.edit…
(edit) @3092   16 years Jari Häkkinen Added another affymetrix reporter importer configuration.
(edit) @3091   16 years Martin Svensson References #146 Added helptexts for editing user. Set svn:eol-style on …
(edit) @3090   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @3089   16 years Martin Svensson BASE now throws right exception when trying to save a new user with a …
(edit) @3088   16 years Martin Svensson Marked the password field to be required when editing a new user.
(edit) @3087   16 years Nicklas Nordborg Make sure DbControl? is closed
(edit) @3086   16 years Nicklas Nordborg Fixes #466: Remaining Quantity not display in extracts
(edit) @3085   16 years Nicklas Nordborg Fixes #440: Update to latest versions of 3rd-party software
(edit) @3084   16 years Martin Svensson Added a help text for column configuration
(edit) @3083   16 years Martin Svensson Correct a parameter in genepix-dyeswap configuration for the …
(edit) @3082   16 years Martin Svensson Fixes #478 Plate Importer requests more permissions
(edit) @3081   16 years Martin Svensson Remarks added for each configuration in the list.
(edit) @3080   16 years Martin Svensson Gave the edit-toolbar a proper BASE2-look.
(edit) @3079   16 years Nicklas Nordborg References #466: Remaining Quantity not display in extracts Fixed …
(edit) @3078   16 years Nicklas Nordborg References #459: Better error message if plugin jar can't be found …
(edit) @3077   16 years Nicklas Nordborg Fixes #431: Multiple tables from the Table taglib on the same HTML …
(edit) @3076   16 years Nicklas Nordborg Added better log messages to find out where unclosed DbControl:s are …
(edit) @3075   16 years Nicklas Nordborg Fixes #475: Error running RMAExpress plug-in to create new root bioassay.
(edit) @3074   16 years Nicklas Nordborg Fixes #476: "Import" button is not shown even if the user has …
(edit) @3073   16 years Nicklas Nordborg Fixes #477: Creating a child item in the same transaction as the …
(edit) @3072   16 years Nicklas Nordborg Fixed another path problem when running server on Windows
(edit) @3070   16 years Jari Häkkinen Added core plugins link to admin docs list.
(edit) @3069   16 years Jari Häkkinen Added remark column and increased page width.
(edit) @3068   16 years Johan Enell Merged log:branches/2.1.2#2991:3059 to trunk
(edit) @3067   16 years Jari Häkkinen Remove CR characters from files and fixing svn:eol-style property.
(edit) @3066   16 years Jari Häkkinen Removed parantheses in filenames. Trac cannot handle these in the …
(edit) @3065   16 years Jari Häkkinen Added copyright statement.
(edit) @3064   16 years Jari Häkkinen Added Affymetrix reporter (probeset) importer configuration.
(edit) @3062   16 years Nicklas Nordborg References #262 and #340: Added possibility to save preset for …
(edit) @3061   16 years Nicklas Nordborg Fixes #465: 'Encrypt password' checkbox should not be visible when …
(edit) @3058   16 years Martin Svensson Added one more configuration file for download in the plugin list. …
(edit) @3057   16 years Martin Svensson References #146 Added a tag/menu to symbolize menu names in helptexts. …
(edit) @3056   16 years Jari Häkkinen Changed requirements on tomcat to 5.5.16 or later.
(edit) @3054   16 years Martin Svensson Moved the core plugin list to administration documentation
(edit) @3053   16 years Martin Svensson Removed the coreplugins.html from the doc/user/ catalog.
(edit) @3052   16 years Martin Svensson Fixes #459 Better error message if plugin jar can't be found
(edit) @3051   16 years Nicklas Nordborg References #262 and #340: Some minor improvements and fixes
(edit) @3050   16 years Nicklas Nordborg References #440: Update to latest versions of 3rd-party software …
(edit) @3049   16 years Nicklas Nordborg References #464: Permission denied when creting AnyToAny? I think this …
(edit) @3048   16 years Martin Svensson Extended the plugin-list. All core plugins are now in the list. Left …
(edit) @3047   16 years Martin Svensson First version of a list with all core plugins in BASE2
(edit) @3046   16 years Martin Svensson References #146 Added one more edit tool for links
(edit) @3045   16 years Nicklas Nordborg References #262 and #340. The overview and validation is now complete. …
(edit) @3044   16 years Nicklas Nordborg Return each inherited annotation only once
(edit) @3041   16 years Martin Svensson Misspelt style name
(edit) @3040   16 years Martin Svensson References #146 Finished with making the help-text writing more easy. …
(edit) @3036   16 years Martin Svensson Reference #146 Beginning of tools to make it more easy editing the …
(edit) @3035   16 years Johan Enell References #439
(edit) @3034   16 years Nicklas Nordborg Reverted last change since it appears that Eclipse messed with this …
(edit) @3033   16 years Nicklas Nordborg References #262, #340: First prototype for experiment overview. Reads …
(edit) @3032   16 years Johan Enell The header regexp was mixed up between genepix cy3/cy5 and genepix cy5/cy3
(edit) @3030   16 years Nicklas Nordborg Fixed some problems with loading array slide and hybiridization in one …
(edit) @3029   16 years Nicklas Nordborg References #412: Fix build.xml to make it more developer-friendly …
(edit) @3028   16 years Nicklas Nordborg Fixed number parsing problems with int/long and double/float
(edit) @3027   16 years Nicklas Nordborg References #412: Fix build.xml to make it more developer-friendly …
(edit) @3025   16 years Jari Häkkinen Changed src install instructions to use 'ant package.bin'
(edit) @3024   16 years Nicklas Nordborg References #262 and #340. Added draft specification
(edit) @3023   16 years Nicklas Nordborg Fixes #311: Allow parsing of numbers with different locale settings
(edit) @3021   16 years Martin Svensson Replaced 'Most recent' in the menu bar with an icon
(edit) @3020   16 years Nicklas Nordborg Yet another stylesheet fix
(edit) @3019   16 years Nicklas Nordborg More fixes to menu stylesheet
(edit) @3018   16 years Nicklas Nordborg Fixed menubar height since the images didn't fit.
(edit) @3017   16 years Martin Svensson Added a 'refresh-page'- button to the menu bar.
(edit) @3016   16 years Nicklas Nordborg Removed 'bin' from ignore properties and added 'testdata'
(edit) @3015   16 years Nicklas Nordborg Fixes #405: Highlight function in plot tool
(edit) @3013   16 years Martin Svensson Fixes #98 "Excluded" items are still included if a list is exported
(edit) @3012   16 years Martin Svensson References #444.Added the check of existing path for this plugin too.
(edit) @3011   16 years Martin Svensson Fixes #444 Plugins should check that they are allowed to …
(edit) @3005   16 years Martin Svensson Fixes #455 Empty date field is not accepted at several places.
(edit) @3004   16 years Martin Svensson Fixes #374 Restoring a Bioassayset or Transformation restores all …
(edit) @2999   16 years Nicklas Nordborg Fixes #453: End date is not allowed to be empty
(edit) @2998   16 years Nicklas Nordborg References #215: Incorrect use of DynamicSpotQuery?... Fixed problem …
(edit) @2994   16 years Nicklas Nordborg Fixed bug when web.xml wansn't found in config/local
(edit) @2993   16 years Nicklas Nordborg Fixes #215: Incorrect use of DynamicSpotQuery? in table view, plot …
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