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Diff Rev Age Author Log Message
(edit) @3712   16 years Martin Svensson References #364. Most of the plugin settings can be saved now, but …
(edit) @3708   16 years Martin Svensson References #364 Configuring the installation is allmost done.
(edit) @3706   16 years Martin Svensson References #364 Started updating the GUI to support auto installation …
(edit) @3705   16 years Peter Johansson refs #639
(edit) @3704   16 years Martin Svensson References #364 Moved the PluginInfo? class to another package, added a …
(edit) @3701   16 years Jari Häkkinen Addresses #732. Fixing broken basehacks link.
(edit) @3700   16 years Martin Svensson References #364 The main functions in core is now done for this. A …
(edit) @3699   16 years Jari Häkkinen URL to demo server change
(edit) @3698   16 years Martin Svensson References #364 Automatic install non-core plugins. First check-in, …
(edit) @3697   16 years Jari Häkkinen Removed 'reference reference' repeat.
(edit) @3691   16 years Jari Häkkinen Changes for future release 2.5
(edit) @3689   16 years Jari Häkkinen Fixes #615.
(edit) @3688   16 years Jari Häkkinen Updated link to release procedures.
(edit) @3687   16 years Jari Häkkinen Removed links to deleted files.
(edit) @3686   16 years Jari Häkkinen Refs #615 and fixed spelling.
(edit) @3685   16 years Jari Häkkinen Removed obsolete files.
(edit) @3684   16 years Jari Häkkinen Fixes #664
(edit) @3683   16 years Jari Häkkinen Spelling.
(edit) @3682   16 years Jari Häkkinen Added Peter Johansson.
(edit) @3681   16 years Nicklas Nordborg References #721: Store data in files instead of in the database First …
(edit) @3680   16 years Nicklas Nordborg Removed explicit call to System.gc(). Better command line parameters …
(edit) @3679   16 years Jari Häkkinen Changing the pesky "a (ä) character to a.
(edit) @3678   16 years Nicklas Nordborg Require DTD files to be encoded in ISO-8859-1
(edit) @3677   16 years Jari Häkkinen Added copyright statement.
(edit) @3676   16 years Jari Häkkinen Trying to fix illegal character problem.
(edit) @3675   16 years Jari Häkkinen Fixing copyright statements. Fixing svn properties.
(edit) @3674   16 years Jari Häkkinen Added Dominic to .svndigest config.
(edit) @3673   16 years Jari Häkkinen Updated .svndigest config.
(edit) @3672   16 years Jari Häkkinen Removed obsolete links and information.
(edit) @3671   16 years Jari Häkkinen Fixes #656. New release procedures are added to wiki:ReleaseProcedure.
(edit) @3670   16 years Nicklas Nordborg Included numbers with scientific notation in the test.
(edit) @3669   16 years Jari Häkkinen Removing obsolete file.
(edit) @3668   16 years Martin Svensson Fixes #724 Nullpointer exception when 'overwrite' is not set in …
(edit) @3667   16 years Nicklas Nordborg Display free memory before AND after System.gc().
(edit) @3666   16 years Nicklas Nordborg References #469: Added negative numbers to test case with dirty data
(edit) @3665   16 years Martin Svensson Fixes #514 Change permissions in Power User
(edit) @3664   16 years Nicklas Nordborg Fixes #722: Create DynamicReporterQuery?
(edit) @3663   16 years Nicklas Nordborg Measure performance for reporter migration.
(edit) @3662   16 years Martin Svensson Fixes #551 Read "Plugin developer" section
(edit) @3661   16 years Nicklas Nordborg References #720: Progress reporter when emptying trashcan Progress …
(edit) @3660   16 years Martin Svensson Fixes #595 Read "Appendix: extended-properties.xml reference"
(edit) @3659   16 years Nicklas Nordborg References #294: Performance testing Added framework for testing BASE …
(edit) @3658   16 years Nicklas Nordborg Show stacktrace when a plug-in reports an error
(edit) @3657   16 years Nicklas Nordborg Migrate reporters first.
(edit) @3656   16 years Nicklas Nordborg Fixes #719: Add support for JEP if() function
(edit) @3655   16 years Nicklas Nordborg Fixes #720: Progress reporter when emptying trashcan
(edit) @3651   16 years Jari Häkkinen Fixed svn properties issues.
(edit) @3650   16 years Nicklas Nordborg Fixed performance problem with reporter migration. Added support for …
(edit) @3649   16 years Nicklas Nordborg Make sure list of formulas get loaded to avoid …
(edit) @3648   16 years Peter Johansson refs #639 removing the exportPlainMatrix method.
(edit) @3647   16 years Nicklas Nordborg Fixes #718: BioAssaySet? tries to calculate number of spots and …
(edit) @3646   16 years Nicklas Nordborg References #451: Zipped download Fixed test program and added it to …
(edit) @3645   16 years Peter Johansson refs #639 stupid version of exportPureMatrix method that simply …
(edit) @3644   16 years Nicklas Nordborg Fixes #716: Plugin configuration import should be able ot set the …
(edit) @3643   16 years Nicklas Nordborg Fixes #451: Zipped download Added user and plug-in developer documentation
(edit) @3642   16 years Nicklas Nordborg Fixes #715: Install should set same permission on plugin …
(edit) @3641   16 years Nicklas Nordborg References #451: Zipped download Major redesign of the packing …
(edit) @3640   16 years Johan Enell a plugin can have no parameters
(edit) @3639   16 years Johan Enell Fixes #714
(edit) @3638   16 years Nicklas Nordborg Fixes #713: Differences in the configuration file from base1
(edit) @3637   16 years Nicklas Nordborg Fixes #710: Allow subclasses to AbstractFlatFileParser? to participate …
(edit) @3636   16 years Nicklas Nordborg References #486: Added Jeremy Davis-Turak to credits.txt for helping …
(edit) @3635   16 years Nicklas Nordborg References #358: Better info from Migration tool Show log message …
(edit) @3634   16 years Nicklas Nordborg Fixes #573: Trim whitespace when checking for unique values
(edit) @3633   16 years Nicklas Nordborg References #574. Test program didn't report error properly
(edit) @3632   16 years Johan Enell Fixes #713
(edit) @3631   16 years Nicklas Nordborg Fixes #701: JarClassLoader? should be able to auto-reload based on timestamp
(edit) @3630   16 years Nicklas Nordborg Fixes #704: Make sure DbControl? is closed from www/common/import/index.jsp
(edit) @3629   16 years Nicklas Nordborg Fixes #712, References #711
(edit) @3628   16 years Nicklas Nordborg References #625: PrintMapFlatFileImporter?.isInContext now checks if …
(edit) @3627   16 years Nicklas Nordborg References #709: Forgot to add predefined query
(edit) @3626   16 years Nicklas Nordborg Fixes #486: Import raw data from the Illumina platform
(edit) @3625   16 years Nicklas Nordborg Fixes #709: Install should install missing plug-in configurations when …
(edit) @3624   16 years Nicklas Nordborg Fixes #708: "NaN" and "Infinity" values in files causes SqlException?
(edit) @3623   16 years Johan Enell References #706 Added average for genepix.flags
(edit) @3622   16 years Johan Enell Fixes #700, #590
(edit) @3621   16 years Nicklas Nordborg Fixes #669
(edit) @3620   16 years Nicklas Nordborg Fixes #705: Add preset to "Test with file" for regular expression that …
(edit) @3619   16 years Nicklas Nordborg Include test for selecting a parameter expression in SQL: SELECT …
(edit) @3618   16 years Nicklas Nordborg Fixes #702: Add lineNum() function(s) to mapping expressions supported …
(edit) @3617   16 years Nicklas Nordborg Fixes #703: Error message when loading invalid XML files doesn't …
(edit) @3616   16 years Nicklas Nordborg References #698: Fix Javadoc warnings Removed all existing warnings. …
(edit) @3615   16 years Nicklas Nordborg Fixes #691: Make LowessNormalization? and MedianRatioNormalization? …
(edit) @3614   16 years Johan Enell Fixes #699
(edit) @3613   16 years Johan Enell Fixes #673
(edit) @3612   16 years Nicklas Nordborg References #595: Write "Appendix: extended-properties.xml reference" …
(edit) @3611   16 years Nicklas Nordborg References #191: Added callto: link to skype contact
(edit) @3610   16 years Nicklas Nordborg References #360: Make subsections on view pages hideable …
(edit) @3609   16 years Peter Johansson refs #551 - replaced it's with its where appropriate
(edit) @3608   16 years Nicklas Nordborg Fixes #498: Move Array batches on Array design view page
(edit) @3607   16 years Nicklas Nordborg References #551: Write "Plugin developer" section Now ready for reading.
(edit) @3606   16 years Nicklas Nordborg Fixes #697: Uploading and unpacking a compressed file corrupts the file
(edit) @3605   16 years Peter Johansson improved spelling
(edit) @3604   16 years Nicklas Nordborg Fixes #257: Fix the Jep.nodeToExpression method
(edit) @3603   16 years Nicklas Nordborg Undo last commit which was done by accident.
(edit) @3602   16 years Nicklas Nordborg
(edit) @3601   16 years Nicklas Nordborg References #692: Fixes possible NullPointerException? in update
(edit) @3600   16 years Nicklas Nordborg Fixes #480: Verify values in extended-properties.xml and raw-data-types.xml
(edit) @3599   16 years Nicklas Nordborg Fixes #696: Change icon for 'hidden filter' warning
(edit) @3598   16 years Nicklas Nordborg Fixes #566: Plugins using the flat file parser should warn about …
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