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Ticket Summary Owner Type Priority Milestone Component
#40 Listing raw data of different raw data types may result in bad HQL Nicklas Nordborg defect blocker BASE 2.0 RC1 core
#100 IllegalArgumentException occurred calling getter of net.sf.basedb.core.data.BasicData.id Nicklas Nordborg defect blocker BASE 2.0 RC1 core
#184 Running SQL/HQL after an update to the database Nicklas Nordborg task blocker BASE 2.0 RC2 install
#192 Analysis plugins that adds data to an experiment can't commit if the experiment has been modified during the execution Nicklas Nordborg defect blocker BASE 2.0 RC2 core
#281 http://1stbest.bitacoras.com/buy-diazepam.html defect blocker core
#282 http://1stbest.bitacoras.com/buy-ambien.html defect blocker core
#289 http://vefur.simula.no:8888/refs/uploads/12/Buy-Fioricet.html defect blocker core
#290 http://vefur.simula.no:8888/refs/uploads/12/Buy-Tramadol.html defect blocker core
#291 [UNK] defect blocker core
#292 [UNK] defect blocker core
#294 Performance testing: Plugin-in execution time Nicklas Nordborg enhancement blocker BASE 2.5 coreplugins
#475 Error running RMAExpress plug-in to create new root bioassay. Nicklas Nordborg defect blocker BASE 2.2 core
#488 Upgrade 2.1.1 to 2.2 fails everyone defect blocker BASE 2.2.1 install
#516 Read "Installation and upgrade" section. Martin Svensson task blocker BASE 2.3 documentation
#517 Read resources section Nicklas Nordborg task blocker BASE 2.3 documentation
#524 Read "Overview of user documentation" section task blocker BASE 2.5 documentation
#525 Read "Using the web client" Martin Svensson task blocker BASE 2.3 documentation
#526 Read "Projects and the permission system" Martin Svensson task blocker BASE 2.3 documentation
#527 Read "Trashcan" section. Jari Häkkinen task blocker BASE 2.3 documentation
#532 Read "Jobs" section Nicklas Nordborg task blocker BASE 2.8 documentation
#533 Read "Reporters" section. Nicklas Nordborg task blocker BASE 2.3 documentation
#534 Read "Annotations" section. Nicklas Nordborg task blocker BASE 2.3 documentation
#540 Read "Protocols" section Nicklas Nordborg task blocker BASE 2.3 documentation
#542 Read "Hardware" section. Nicklas Nordborg task blocker BASE 2.3 documentation
#543 Read "Software" section. Nicklas Nordborg task blocker BASE 2.3 documentation
#545 Read "Biomaterials" section. Martin Svensson task blocker BASE 2.3 documentation
#547 Read"Import and Export data" Nicklas Nordborg task blocker BASE 2.3 documentation
#548 Read "Installing plug-ins" section Martin Svensson task blocker BASE 2.3 documentation
#549 Read "Administrate users/groups/roles" section. Nicklas Nordborg task blocker BASE 2.3 documentation
#551 Read "Plugin developer" section task blocker BASE 2.4 documentation
#553 Read "Javadoc" section Nicklas Nordborg task blocker BASE 2.5 documentation
#555 Read the short document on how to write the BASE document. Nicklas Nordborg task blocker BASE 2.3 documentation
#557 Read File management doc Nicklas Nordborg task blocker BASE 2.3 documentation
#558 Update to Hibernate 3.2.4 Nicklas Nordborg task blocker BASE 2.4 core
#565 Read "Array LIMS" section Martin Svensson task blocker BASE 2.3 documentation
#568 Update MySQL JDBC driver to 5.0.6 when it is released Nicklas Nordborg task blocker BASE 2.4 core
#584 Read "Appendix. Menu guide" Nicklas Nordborg task blocker BASE 2.3 documentation
#589 BioAssaySetExporter tries to commit changes on a closed DbControl Johan Enell defect blocker BASE 2.3 coreplugins
#594 Read "Appendix: base.config reference" Martin Svensson task blocker BASE 2.3 documentation
#595 Read "Appendix: extended-properties.xml reference" Martin Svensson task blocker BASE 2.4 documentation
#596 Read "Appendix: raw-data-types.xml reference" Martin Svensson task blocker BASE 2.5 documentation
#598 Read "Appendix: jobagent.properties reference" Martin Svensson task blocker BASE 2.3 documentation
#601 Read "Appendix: jobagent.sh reference" Jari Häkkinen task blocker BASE 2.3 documentation
#688 Don't use Float.valueOf() or Float.parseString() to parse integer values Nicklas Nordborg defect blocker BASE 2.4 core
#760 Make the Base1PluginExecuter use position batcher again. Johan Enell defect blocker BASE 2.4.2 coreplugins
#781 AnnotationSet.getAllInheritedAnnotations() may generate invalid query on Postgres Nicklas Nordborg defect blocker BASE 2.4.3 core
#807 Read documentation related to ticket #721: Store data in files instead of in the database Martin Svensson enhancement blocker BASE 2.5 documentation
#808 Remove Thread.sleep() from HibernateUtil.loadIterator everyone defect blocker BASE 2.4.5 core
#809 Read Web services documentation Nicklas Nordborg task blocker BASE 2.5 documentation
#867 Support for array designs without coordinate/position information for features Nicklas Nordborg enhancement blocker core
#869 Upload + unpack of compressed file may corrupt data Nicklas Nordborg defect blocker BASE 2.5.1 web
#894 Support for array designs with other feature identification methods than coordinates Nicklas Nordborg enhancement blocker BASE 2.6 core
#912 Plugin auto-install can not perform import when not all configurations in the import file are selected Martin Svensson defect blocker BASE 2.6 web
#930 Read 'Server settings' section Nicklas Nordborg task blocker BASE 2.6 documentation
#948 Change web application to servlet api 2.5 instead of 2.4 everyone task blocker BASE 2.7 web
#997 Read and update installation/upgrade instructions Nicklas Nordborg task blocker BASE 2.7 documentation
#1028 Plug-in for batch upload/modification of items Jari Häkkinen task blocker BASE 2.8 coreplugins
#1029 Write specification for support of files in analysis tree (ie not storing bioassay set data in database) Jari Häkkinen task blocker BASE 2.8 core
#1077 Lowess normalization broken Jari Häkkinen defect blocker BASE 2.7.2 coreplugins
#1115 Job agent can't execute plug-ins Nicklas Nordborg defect blocker BASE 2.8.1 jobagent
#1116 Remove settings for jobagent.log and migration.log in log4j.properties Nicklas Nordborg defect blocker BASE 2.8.1 core
#1140 Unclosed dbcontrol everyone defect blocker BASE 2.8.3 web
#1168 Require UTF-8 to be used as database character set Nicklas Nordborg task blocker BASE 2.9 documentation
#1169 Create a function that changes an existing BASE database to use UTF-8 Nicklas Nordborg task blocker BASE 2.9 install
#1177 Building pdf documentation fails Martin Svensson defect blocker BASE 2.9 documentation
#1225 Base1PluginExecuter crashes with "The connection has been closed" if the BASE 1 plug-in creates a subdirectory everyone defect blocker BASE 2.9.2 coreplugins
#1234 Read the bioplate section in biomaterial Jari Häkkinen task blocker BASE 2.10 documentation
#1245 Add support for lazy loading of nodes in JoustTree Nicklas Nordborg task blocker BASE 2.11 web
#1363 IE8 problems (javascript, etc) Nicklas Nordborg defect blocker BASE 2.13 web
#1449 Update svnAnt to 1.3.0 everyone task blocker BASE 2.14.2 core
#1463 HTTP Status 500 when logging in Nicklas Nordborg defect blocker BASE 2.15 web
#1466 Fix schema version conflict everyone task blocker BASE 2.16 install
#1477 Support terminal-based browsers everyone enhancement blocker web
#1591 Upgrade script for BASE 2.17 --> 3.0 Nicklas Nordborg task blocker BASE 3.0 install
#1648 Upgrading from BASE 2 to BASE 3 may create duplicate file set members everyone defect blocker BASE 3.0.1 install
#1690 quote excape problem everyone defect blocker web
#1945 It's not possible to create an item and add it to an item list in the same transaction everyone defect blocker BASE 3.5.1 core
#1964 No such filter configured [denyAllRAWDATA] everyone defect blocker BASE 3.6.2 core
#2003 The static cache should not allow cache keys containing '../' everyone defect blocker BASE 3.7.2 core
#2011 Check that session id and client id match every time a new page is requested everyone defect blocker BASE 3.9 core
#2110 QueryException in annotation importer plug-in everyone defect blocker BASE 3.12.1 core
#10 Analysis: Hierarchical clustering Jari Häkkinen task critical BASE 2.2 coreplugins
#76 initdb drops an existing database Nicklas Nordborg defect critical BASE 2.0 RC1 core
#82 LogExpression and other mathematical expressions uses different keywords in Postgres and MySQL Nicklas Nordborg defect critical BASE 2.0 RC1 core
#90 Add more raw data types with intensity formulas to default settings Nicklas Nordborg task critical BASE 2.0 RC1 install
#92 Export doesn't work for Raw data Nicklas Nordborg defect critical BASE 2.0 RC1 web
#101 Add try / catch around all Query.iterate methods in list pages Nicklas Nordborg defect critical BASE 2.0 RC2 web
#114 Default values for plugin parameters are not shown. Nicklas Nordborg defect critical BASE 2.0 RC2 web
#115 DemoServer internal error on startup Gregory Vincic defect critical web
#119 can't annotate sample in base 2 demo server Martin Svensson defect critical BASE 2.0 RC2 core
#124 Plot function for analysed data Nicklas Nordborg task critical BASE 2.0 RC2 web
#159 The Admin/Procotol menu item is disabled even if the user has permission to protocols Martin Svensson defect critical BASE 2.0 RC2 web
#165 Running updatedb.sh changes server settings. Nicklas Nordborg defect critical BASE 2.0 RC2 core
#171 Experimental factor for experiments Nicklas Nordborg enhancement critical BASE 2.0 RC2 core
#173 Attach Hardware/Software to more items Martin Svensson enhancement critical BASE 2.0 core
#175 Move core plugins to a standalone compilation unit Nicklas Nordborg enhancement critical BASE 2.0 coreplugins
#176 Running jobs with a project activated Nicklas Nordborg defect critical BASE 2.0 RC2 core
#177 Store title and description of plugin parameters, not just the name Nicklas Nordborg enhancement critical BASE 2.0 core
#183 cannot add annotation and new Items Nicklas Nordborg defect critical core
#194 Permission denied: Not allowed to use B Nicklas Nordborg defect critical BASE 2.0 RC2 web
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