#894 |
Support for array designs with other feature identification methods than coordinates
|
Nicklas Nordborg
|
enhancement
|
blocker
|
core
|
|
#912 |
Plugin auto-install can not perform import when not all configurations in the import file are selected
|
Martin Svensson
|
defect
|
blocker
|
web
|
|
#930 |
Read 'Server settings' section
|
Nicklas Nordborg
|
task
|
blocker
|
documentation
|
|
#911 |
Add support for having file validators and meta data extrators in external jar files.
|
Nicklas Nordborg
|
enhancement
|
critical
|
core
|
|
#918 |
Adding multiple new DataFileTypes to a platform or variant only saves the first one added
|
Nicklas Nordborg
|
defect
|
critical
|
core
|
|
#636 |
Kill a running job
|
Nicklas Nordborg
|
task
|
major
|
core
|
|
#868 |
Support for chips with multiple arrays
|
Nicklas Nordborg
|
enhancement
|
major
|
core
|
|
#880 |
Exclude reporters in Lowess
|
Nicklas Nordborg
|
enhancement
|
major
|
web
|
trunk
|
#895 |
Add serialVersionUID to all classes that need it but doesn't have it
|
Nicklas Nordborg
|
enhancement
|
major
|
core
|
|
#899 |
Specify "source" and "target" options in <javac> tasks in our ant buildfile
|
Nicklas Nordborg
|
enhancement
|
major
|
core
|
|
#900 |
Verify that multiple raw data spots on the same raw bioassay doesn't reference the same feature
|
Nicklas Nordborg
|
defect
|
major
|
core
|
|
#901 |
GuiContext should implement the equals() method
|
everyone
|
defect
|
major
|
core
|
|
#902 |
Support for multiple configuration files for raw data types and extended properties
|
Nicklas Nordborg
|
enhancement
|
major
|
core
|
|
#904 |
Subclasses of AbstractFlatFileImporter should be able to wrap the file inputstream
|
Nicklas Nordborg
|
enhancement
|
major
|
coreplugins
|
|
#905 |
AbstractFlatFileParser aborts parsing if a parseHeaders() doesn't find any data
|
Nicklas Nordborg
|
defect
|
major
|
coreplugins
|
|
#906 |
FlatFileParser should not always throw an exception if a column header is not found
|
Nicklas Nordborg
|
defect
|
major
|
core
|
|
#907 |
"Test with file" function should be able to wrap input stream
|
Nicklas Nordborg
|
enhancement
|
major
|
web
|
|
#908 |
Exception when listing features of an array design
|
everyone
|
defect
|
major
|
web
|
|
#910 |
Plug-ins ignore file set by the auto-detect file format function
|
Nicklas Nordborg
|
defect
|
major
|
web
|
|
#913 |
Plug-in JAR paths should support paths relative to the plugins.dir setting in base.config
|
Nicklas Nordborg
|
enhancement
|
major
|
core
|
|
#915 |
NullPointerException when a raw data type is missing
|
Nicklas Nordborg
|
defect
|
major
|
core
|
|
#916 |
Base1PluginExecuter commits transaction even in case of a failure
|
Nicklas Nordborg
|
defect
|
major
|
coreplugins
|
|
#919 |
Long query against dynamic database may cause session to timeout
|
everyone
|
defect
|
major
|
core
|
|
#928 |
Can't import feature to an array design which has metadata about number of features in a file
|
everyone
|
defect
|
major
|
core
|
|
#762 |
Provide operators 'In' and 'Not in' when filtering a list
|
Martin Svensson
|
enhancement
|
minor
|
core
|
|
#771 |
Make annotations for Bioassays available in bioassay table within a BioassaySet
|
Nicklas Nordborg
|
enhancement
|
minor
|
web
|
|
#790 |
Job slot status information on job agent view
|
Nicklas Nordborg
|
task
|
minor
|
core
|
|
#838 |
Change default value of Blockgroup size to 0 in Lowess
|
Nicklas Nordborg
|
enhancement
|
minor
|
coreplugins
|
2.4.6
|
#879 |
Add column holding the filename of last file used for updating reporter annotations
|
Martin Svensson
|
enhancement
|
minor
|
core
|
|
#887 |
Internal job queue may start the same job more than once if running BASE on multiple Tomcat instances
|
everyone
|
defect
|
minor
|
core
|
|
#888 |
Make dynamic table creation code more stable
|
Nicklas Nordborg
|
enhancement
|
minor
|
core
|
|
#889 |
Clicking "Help" throws a Python error
|
Martin Svensson
|
defect
|
minor
|
web
|
2.5.0
|
#892 |
Abort long-running queries
|
Nicklas Nordborg
|
enhancement
|
minor
|
core
|
|
#893 |
Add support for setting a job's status to ABORTING
|
Nicklas Nordborg
|
enhancement
|
minor
|
core
|
|
#896 |
Stop generating too long URL:s
|
Nicklas Nordborg
|
defect
|
minor
|
web
|
|
#909 |
Move some static fields from AbstractFlatFileImporter to a separate class
|
Nicklas Nordborg
|
enhancement
|
minor
|
coreplugins
|
|
#914 |
Make PluginConfigurationImporter smarter
|
Martin Svensson
|
enhancement
|
minor
|
coreplugins
|
|
#917 |
The progress reporter for a job should update the database if the progress is increased with >= 5%
|
Nicklas Nordborg
|
enhancement
|
minor
|
core
|
|
#921 |
Experiment overview should be updated with support for mutli-array slides
|
Nicklas Nordborg
|
enhancement
|
minor
|
core
|
|
#923 |
Possible NullPointerException in ExperimentOverview
|
everyone
|
defect
|
minor
|
core
|
|
#924 |
FAQ 2 in Chapter 28. Reporters related FAQs is outdated
|
Nicklas Nordborg
|
enhancement
|
minor
|
documentation
|
|
#926 |
Update IlluminaRawDataImporter to set the RawBioAssay.arrayNum property
|
Nicklas Nordborg
|
enhancement
|
minor
|
coreplugins
|
|
#929 |
An existing share to Everyone may block sharing an item to others if the user lacks SHARE_TO_EVERONE permissions
|
Nicklas Nordborg
|
defect
|
minor
|
core
|
|
#931 |
Share items to EVERYONE without SHARE_TO_EVERYONE permission
|
Nicklas Nordborg
|
defect
|
minor
|
core
|
|
#837 |
Lowess plugin. Error: Sum of weigths in line_fit is not positive
|
everyone
|
defect
|
trivial
|
coreplugins
|
|