Opened 13 years ago

Closed 13 years ago

#1167 closed defect (fixed)

Base1PluginExecutor should handle reporter-id=0 as null in some cases

Reported by: Nicklas Nordborg Owned by: Nicklas Nordborg
Priority: major Milestone: BASE 2.9
Component: coreplugins Version:
Keywords: Cc:

Description

There is a problem with some BASE1 plug-ins when a bioassay set has spots without a reporter (eg the reporter is null). When the BioAssaySetExporter? exports data for spots that has a null reporter the column is empty.

Eg.

40076            3752.0    5588.0    47
40077    536225    RP11-381L15    1184.0    2033.0    47

Some BASE1 plug-ins returns the result with a 0 in the corresponding column.

40079    0        6813.3    6835.66    47
40300    233476    RP11-242P12    7000.09    6676.78    47

The proposed solution is to convert the 0 to a null when importing the processed data if:

  1. There is no reporter with id=0 in the export. This is probably always true since IDs usually starts at '1'.
  2. There was spots data without reporters in the export.

Change History (2)

comment:1 Changed 13 years ago by Nicklas Nordborg

Owner: changed from everyone to Nicklas Nordborg
Status: newassigned

comment:2 Changed 13 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

(In [4631]) Fixes #1167: Base1PluginExecutor should handle reporter-id=0 as null in some cases

Test case converts all empty reporter values to 0.

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