can't annotate sample in base 2 demo server

[r.maccallr@…]

Hi Jari/others,

When I'm using my guest509 username on the base2 demo server, I can create a new Sample, but I can't give it an Annotation. I'm not trying to create a new Annotation type, I'm just assigning one of the existing annotations and I get this error.

Permission denied On page /base2demo/biomaterials/samples/index.jsp Permission denied: Not allowed to create Annotation set[new]

maybe it's just a permission thing, rather than a bug, but I didn't want to ignore it completely - hence this bug report!

thanks,

Bob.

[Johan Enell]

Annotations isnt migrated correct. Permission r in base1 must be translated to ru in base2. Investigating if this is true for all items.

[Nicklas Nordborg]

This is probably a bug in the AnnotationSet?.initPermissions method. The current implementation seems to only works if the AnnotationSet? is already saved in the database. In older code the AnnotationSet? was created behind the scenes when needed (and not subject to permission checks), but that is not the case anymore. Since there is no explicit way of setting permissions for AnnotationSet:s (and there shouldn't be), the bug in the initPermissions method results in that only the root user can create the first annotation. Once there is an annotation the code is correct and it shouldn't be a problem for other users to change the annotation or create new annotations.

[Martin Svensson]

(In [2098]) Fixes #119. Can't annotate sample in base 2 demo server