Opened 12 years ago

Closed 12 years ago

#1427 closed enhancement (fixed)

Raw data type lookup by name in rawbioassay batch importer

Reported by: base Owned by: Nicklas Nordborg
Priority: major Milestone: BASE 2.15
Component: coreplugins Version:
Keywords: rawbioassay batch import raw data type ID Cc:

Description

Plugin batchimporting rawbioassays is using raw data type ID to find the right raw data type. I believe it does it only for Generic platform because it does not complain about Illumina platform's raw data type's provided by name (Illumina Bead Summary (IBS)). The ID of raw data type is not accessible in BASE GUI so it is difficult for users to guess it (if it is different than name). Could the plugin search for the name first and afterwards for the ID?

Change History (4)

comment:1 Changed 12 years ago by Nicklas Nordborg

Milestone: BASE 2.15

I guess we could search for the names also, using the same rules as when other items are searched (eg. handling for duplicate matches, etc.) The reason that it seems to work for Illumina is that a search is never performed in this case. The Illumina platform is locked to a specific raw data type and the importer will simply ignore the raw data type column in the file.

comment:2 Changed 12 years ago by Nicklas Nordborg

Owner: changed from everyone to Nicklas Nordborg
Status: newassigned

comment:3 Changed 12 years ago by Nicklas Nordborg

Summary: Rawbioassay batch import plugin using only raw data type IDRaw data type lookup by name in rawbioassay batch importer

comment:4 Changed 12 years ago by Nicklas Nordborg

Resolution: fixed
Status: assignedclosed

(In [5177]) Fixes #1427: Raw data type lookup by name in rawbioassay batch importer

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