Opened 14 years ago

Closed 14 years ago

#671 closed defect (fixed)

Exporting basefiles - the last line of the bioassay set is absent

Reported by: base Owned by: Johan Enell
Priority: major Milestone: BASE 2.4
Component: coreplugins Version: 2.3.2
Keywords: Cc:

Description

Greetings!

I've discovered a problem with exporting BASEfiles. I discovered this while trying to run the BASE1PluginExecuter and unsurprisingly found the same problem when trying to export data from a BioassaySet?. The problem is that the last row of data is absent from the export.

Here's what I observered:

  1. The Raw Bioassay has 31200 rows. When I go to the 'Raw Bioassay' page, 'Raw Data' page and 'Export' it I get all of the rows as a tab-delimited text file. Yay!
  2. I go Experiments->Chad's Experiment->Bioassay Sets and click 'Export Data', select BASEfile and these parameters:
    Average on reporters: false
    Export as matrix or serial basefile: Serial Basefile
    Fields: Int ch1, Int ch2, position
    Reporter: Reporter ID, Reporter Name
    
    The last row I see exported has the position 31199. Row 31200 is absent. A blank line is at the end of this file.
  3. Do everything the same as (2) but select 'Normal Basefile'.

The last row I see exported has the position 31199. Row 31200 is absent. No blank line is at the end of this file.

Thank you for your help,

Chad Matsalla

Change History (2)

comment:1 Changed 14 years ago by Johan Enell

Owner: changed from everyone to Johan Enell
Status: newassigned

comment:2 Changed 14 years ago by Johan Enell

Resolution: fixed
Status: assignedclosed

(In [3554]) Fixes #671, References #590

Test for BioAssaySetExporter? added which highlighted some bug in the BASEfile export. Additional tests for the BASEfile should be added and for the other formats.

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