Timeline



Jul 22, 2005:

5:06 PM Changeset [993] by samuel
Marked ParameterValueData? as abstract.
4:04 PM Changeset [992] by Nicklas Nordborg
Updated documentation for access permissions
3:57 PM Changeset [991] by Johan Enell
Started to work on ArrayDesignBlock?. Create works.
1:25 PM Changeset [990] by Nicklas Nordborg
Added references to Hybridization from LabeledExtract? and BioMaterialEvent?
1:01 PM Changeset [989] by Nicklas Nordborg
Corrected some default role permissions
10:03 AM Changeset [988] by samuel
Modified PluginRunner?.
8:52 AM Changeset [987] by Nicklas Nordborg
Fixed layout problems with Reload button. The last selected directory …

Jul 21, 2005:

8:11 PM Changeset [986] by Nicklas Nordborg
Updated development status
5:12 PM Changeset [985] by Johan Enell
Some additional javadoc fixes
5:03 PM Changeset [984] by Johan Enell
Hybridization association added to ArraySlide? Some minor doc fixes in …
3:04 PM Changeset [983] by Johan Enell
Array LIMS - slides updated
2:58 PM Changeset [982] by Johan Enell
ArraySlide? added to core
1:48 PM Changeset [981] by samuel
Fixed warnings in javadoc.
11:28 AM Changeset [980] by Gregory Vincic
Initial revision of base1Tables.html
11:07 AM Changeset [979] by samuel
Added done method on PluginRunner?.
11:01 AM Changeset [978] by Nicklas Nordborg
First version of access permissions diagram
9:51 AM Changeset [977] by Johan Enell
corrected the md5sum in file
8:59 AM Changeset [976] by Nicklas Nordborg
Fixed export of annotation values to xml and added some more mime …

Jul 20, 2005:

5:23 PM Changeset [975] by Johan Enell
ArrayBatch? added
5:22 PM Changeset [974] by Johan Enell
Array LIMES - slides diagram modified ArrayDesign? and ArrayBatch? item added
4:40 PM Changeset [973] by Nicklas Nordborg
Added labeled extracts administration
4:06 PM Changeset [972] by samuel
Added toString.
3:36 PM Changeset [971] by samuel
Extended NullPlugin? and added more testing.
2:39 PM Changeset [970] by Nicklas Nordborg
Fixed some Javadoc bugs
2:11 PM Changeset [969] by Nicklas Nordborg
Updated documentation for Messages and Filters
12:15 PM Changeset [968] by Nicklas Nordborg
Made DbControl?.getItem accept extra parameters for the item …
11:43 AM Changeset [967] by Nicklas Nordborg
Documented annotations
9:51 AM Changeset [966] by Nicklas Nordborg
Client applications can now force permissions to be reloaded Added …
9:28 AM Changeset [965] by Nicklas Nordborg
Sql queries generated by annotation restrictions now use the Hibernate …
9:06 AM Changeset [964] by Nicklas Nordborg
Made some optimizations to annotation queries
8:40 AM Changeset [963] by Nicklas Nordborg
Annotation queries now support inherited annotations

Jul 19, 2005:

5:44 PM Changeset [962] by Gregory Vincic
Added Upload section
4:05 PM Changeset [961] by Johan Enell
Array LIMS - slide data classes added
3:50 PM Changeset [960] by Nicklas Nordborg
Optimised some aspects of annotation handling
2:31 PM Changeset [959] by Nicklas Nordborg
Query results can now be cached if the list() method is used.
11:50 AM Changeset [958] by Nicklas Nordborg
Fixed some permission checking bugs
11:30 AM Changeset [957] by Nicklas Nordborg
Export function can now generate XML
9:24 AM Changeset [956] by Gregory Vincic
Adding data.file property
9:21 AM Changeset [955] by Gregory Vincic
Simplifying Migrater into one class
8:23 AM Changeset [954] by Nicklas Nordborg
Annotations are now exportable

Jul 18, 2005:

5:10 PM Changeset [953] by Gregory Vincic
Added role mappings
4:58 PM Changeset [952] by Johan Enell
Array LIMS - slides class diagram added
3:55 PM Changeset [951] by Nicklas Nordborg
Added first version of extracts administration
3:54 PM Changeset [950] by Nicklas Nordborg
Better display of annotation types, min/max, etc.
1:53 PM Changeset [949] by Nicklas Nordborg
First version of biomaterial events
1:40 PM Changeset [948] by Nicklas Nordborg
Changed permission check
1:39 PM Changeset [947] by Nicklas Nordborg
Fixed bugs with quantities
1:37 PM Changeset [946] by Nicklas Nordborg
Fixed bug with missing space in query

Jul 15, 2005:

3:56 PM Changeset [945] by Nicklas Nordborg
Fixed some permission problems for annotation types
3:55 PM Changeset [944] by Nicklas Nordborg
Added RoleKey? for AnnotationType?
3:01 PM Changeset [943] by samuel
Updated Plugin.
3:00 PM Changeset [942] by Nicklas Nordborg
Removed debug output
2:49 PM Changeset [941] by Nicklas Nordborg
Added a computed property 'creationEvent' to MeasuredBioMaterial? to …
2:46 PM Changeset [940] by Nicklas Nordborg
XDoclet tasks now updates mapping files to use the Hibernate 3.0 DTD …
2:42 PM Changeset [939] by Nicklas Nordborg
Fixed bug that caused annotations to loaded and created even when no …
11:05 AM Changeset [938] by samuel
Added plugin classes and a PluginConfiguration? test.

Jul 14, 2005:

8:47 PM Changeset [937] by Nicklas Nordborg
Added two new ParemeterValueType? subclasses
8:45 PM Changeset [936] by Nicklas Nordborg
AnnotationType? now support all types defined by the Type enum. Got rid …
4:00 PM Changeset [935] by Nicklas Nordborg
Fixed some potential javascript encoding bugs and added missing data …
2:48 PM Changeset [934] by Nicklas Nordborg
Preset filters now work with annotations
2:09 PM Changeset [933] by Nicklas Nordborg
Quickfilter now supports all value types including annotations
12:07 PM Changeset [932] by Nicklas Nordborg
Made enum filter more generic and not just a special case of int …
9:57 AM Changeset [931] by Nicklas Nordborg
Implemented query restrictions for annotations

Jul 13, 2005:

4:46 PM Changeset [930] by samuel
Changes to parameter type to make it easier too validate in plugin. …
4:02 PM Changeset [929] by Nicklas Nordborg
First version of annotation restrictions for queries (lots of changes)
1:28 PM Changeset [928] by Nicklas Nordborg
Can now add parent(s) to samples
10:59 AM Changeset [927] by Nicklas Nordborg
Sample admin can now edit creation event properties. Prepared for …
10:58 AM Changeset [926] by Nicklas Nordborg
Fixed another filter bug (extra dot in excludes filter)
10:01 AM Changeset [925] by Nicklas Nordborg
Fixed problems with filtering and added possibility to filter/sort on …
9:30 AM Changeset [924] by Gregory Vincic
Added batchwize commit for UserMigrater?

Jul 12, 2005:

5:12 PM Changeset [923] by Gregory Vincic
Added roles and group migration
5:11 PM Changeset [922] by Gregory Vincic
Initial revision
4:10 PM Changeset [921] by Nicklas Nordborg
More sample administration
2:49 PM Changeset [920] by Nicklas Nordborg
Removed debug text
2:41 PM Changeset [919] by Nicklas Nordborg
First version of sample administration
1:49 PM Changeset [918] by Nicklas Nordborg
Modified DbControl?.reattachItem method to allow new items to be …
1:17 PM Changeset [917] by Nicklas Nordborg
submit_xxx.jsp now uses Base.getOldItem for Diff3
1:12 PM Changeset [916] by Nicklas Nordborg
Annotations now supports concurrent modifications
1:11 PM Changeset [915] by Nicklas Nordborg
Added version property to ParameterValueData?
10:39 AM Changeset [914] by Nicklas Nordborg
Fixed potential problems with "bad" characters in generated JavaScript?
9:45 AM Changeset [913] by Nicklas Nordborg
Fixed some more annotation bugs
9:44 AM Changeset [912] by Nicklas Nordborg
Added HTML.javaScriptEncode method

Jul 11, 2005:

4:06 PM Changeset [911] by Nicklas Nordborg
Fixed some IE bugs
3:34 PM Changeset [910] by Nicklas Nordborg
Annotate is now working
3:34 PM Changeset [909] by Nicklas Nordborg
Added parseString and parseStrings methods to AnnotationType?.ValueType?
9:19 AM Changeset [908] by Nicklas Nordborg
Reverted to the previous version, just needed ant clean
8:38 AM Changeset [907] by samuel
Fixed hibernate mapping.
8:31 AM Changeset [906] by Nicklas Nordborg
Didn't compile

Jul 8, 2005:

8:20 PM Changeset [905] by Nicklas Nordborg
Updated development status
4:06 PM Changeset [904] by Nicklas Nordborg
Added Item.getById method needed by Annotation manager
4:05 PM Changeset [903] by Nicklas Nordborg
Added first version of Annotations manager
1:23 PM Changeset [902] by Nicklas Nordborg
Fixed compilation error after adding parameters to File.upload and …
1:12 PM Changeset [901] by samuel
Added query for plugin defintion.
12:53 PM Changeset [900] by samuel
Added plugin classes.
11:50 AM Changeset [899] by Gregory Vincic
Changed printMemoryUsage output
9:49 AM Changeset [898] by Nicklas Nordborg
Added MD5 checks and "resume download" capability for files.

Jul 7, 2005:

8:04 PM Changeset [897] by Nicklas Nordborg
Updated development status
5:17 PM Changeset [896] by Gregory Vincic
Added method printMemoryUsage
4:20 PM Changeset [895] by Gregory Vincic
Initial revision
4:12 PM Changeset [894] by Gregory Vincic
Initial revision
3:44 PM Changeset [893] by Gregory Vincic
Initial revision
2:59 PM Changeset [892] by Nicklas Nordborg
Added Plate mapping admin
1:30 PM Changeset [891] by Nicklas Nordborg
Added plate types admin
11:28 AM Changeset [890] by Nicklas Nordborg
Added Plate geometry administration
10:55 AM Changeset [889] by Nicklas Nordborg
Updated to Hibernate3.0.5
9:48 AM Changeset [888] by Nicklas Nordborg
Updated JavaDoc? and plates overview documentation
9:16 AM Changeset [887] by Nicklas Nordborg
Implemented Diff3 functionality for Labels
8:50 AM Changeset [886] by Nicklas Nordborg
Added Diff3
8:10 AM Changeset [885] by Nicklas Nordborg
Updated UML for Array LIMS - plates

Jul 6, 2005:

4:35 PM Changeset [884] by samuel
Did Plugin/Jobs?.
3:55 PM Changeset [883] by Nicklas Nordborg
Removed duplicate entry
3:53 PM Changeset [882] by Nicklas Nordborg
Fixed some JavaDoc? warnings and added code to Protocol.isUsed() method
2:54 PM Changeset [881] by Nicklas Nordborg
Added more classes for Array LIMS - Plates
9:41 AM Changeset [880] by Gregory Vincic
Fixing Id tags for subversion.
9:36 AM Changeset [879] by Gregory Vincic
Moved CLASSPATH definition from initdb.sh to the includes file.

Jul 5, 2005:

8:38 PM Changeset [878] by Nicklas Nordborg
Updated development status
5:10 PM Changeset [877] by samuel
Started drawing Plugin/Jobs?.
3:51 PM Changeset [876] by Nicklas Nordborg
Fixed some JavaDoc? warnings
3:38 PM Changeset [875] by Nicklas Nordborg
Finished the ProtocolType?.isUsed() method
3:03 PM Changeset [874] by Nicklas Nordborg
Added PlateGeometry?, PlateType? and PlateEventType?
2:55 PM Changeset [873] by Nicklas Nordborg
Modified toString to also display the name of Nameable items
11:52 AM Changeset [872] by Nicklas Nordborg
Added dataclasses for Array LIMS - plates
11:48 AM Changeset [871] by Nicklas Nordborg
Added backticks around database column names

Jul 4, 2005:

8:22 PM Changeset [870] by Nicklas Nordborg
Updated development status
4:04 PM Changeset [869] by Nicklas Nordborg
Updated Array LIMS - plats UML diagram
3:11 PM Changeset [868] by Gregory Vincic
Initial revision
3:06 PM Changeset [867] by Gregory Vincic
Initial revision
1:37 PM Changeset [866] by Nicklas Nordborg
Directory structure is now displayed properly for everybody which has …
1:18 PM Changeset [865] by Nicklas Nordborg
Export files now only export from the current directory
1:04 PM Changeset [864] by Nicklas Nordborg
Implemented Select file and Save as and tested with Protocols and Export
9:14 AM Changeset [863] by samuel
Added implementation of the About interface.
9:09 AM Changeset [862] by samuel
Added plugin classes.
9:01 AM Changeset [861] by Nicklas Nordborg
Annotation types admin is now working

Jul 1, 2005:

5:01 PM Changeset [860] by samuel
Worked on Plugin.
3:56 PM Changeset [859] by Nicklas Nordborg
Renamed password field to new_password to prevent interference from …
2:46 PM Changeset [858] by Nicklas Nordborg
More support for enumeration annotation types
1:19 PM Changeset [857] by Nicklas Nordborg
Included validation of annotation value against enumeration values
1:12 PM Changeset [856] by Nicklas Nordborg
TestAnnotation? now includes an enum test as well
1:06 PM Changeset [855] by Nicklas Nordborg
Changed the way AnnotationType? set options specific to a ValueType?. …

Jun 30, 2005:

8:23 PM Changeset [854] by Nicklas Nordborg
Updated devlopment status and added migration tool specification
3:54 PM Changeset [853] by Nicklas Nordborg
BioSource? can now list annotations
2:28 PM Changeset [852] by Nicklas Nordborg
Added BioSources? to web client
12:04 PM Changeset [851] by Nicklas Nordborg
Tomcat doesn't work anymore if the servlet-api.jar and jsp-api.jar are …
11:47 AM Changeset [850] by Nicklas Nordborg
Allow custom web.xml files
11:29 AM Changeset [849] by Nicklas Nordborg
Added new jsp-api.jar which is needed for ant web
11:15 AM Changeset [848] by Nicklas Nordborg
Added the possibility to use unicode in the database and web client

Jun 29, 2005:

5:07 PM Changeset [847] by samuel
Worked more on Plugin.
4:00 PM Changeset [846] by Nicklas Nordborg
Fixed a compilation error
2:08 PM Changeset [845] by Nicklas Nordborg
AnnotationTypes? admin is now functional, still needs some data validation
1:04 PM Changeset [844] by Nicklas Nordborg
getPropertyValue can now return collections if they don't contain BasicData?
9:53 AM Changeset [843] by Nicklas Nordborg
Added Boolean and String parameter values and annotation types
8:38 AM Changeset [842] by Nicklas Nordborg
Added displayValue to some enumerations
8:18 AM Changeset [841] by Nicklas Nordborg
Core now throws ItemModifiedException? instead of BaseException? if an …

Jun 28, 2005:

5:17 PM Changeset [840] by samuel
Started drawing Plugin.
3:46 PM Changeset [839] by Nicklas Nordborg
Removed "..." from button titles that do not open popup windows, i.e. …
2:57 PM Changeset [838] by Nicklas Nordborg
Added Labels
2:54 PM Changeset [837] by Nicklas Nordborg
Now deletes all created items
2:10 PM Changeset [836] by Nicklas Nordborg
Create new and edit annotation types started
2:09 PM Changeset [835] by Nicklas Nordborg
Sets of items are now sorted alfabetically
2:08 PM Changeset [834] by Nicklas Nordborg
Added displayValue to Item
11:50 AM Changeset [833] by Nicklas Nordborg
Added messages to web client

Jun 27, 2005:

11:50 PM Changeset [832] by Jari Häkkinen
Added removal of generated binary package files.
8:29 PM Changeset [831] by Nicklas Nordborg
Updated development status
4:10 PM Changeset [830] by Nicklas Nordborg
Added Message.countUnreadMessages method
4:02 PM Changeset [829] by Nicklas Nordborg
Updated Misc documentation
4:01 PM Changeset [828] by Nicklas Nordborg
Added Message data and core classes
1:54 PM Changeset [827] by Nicklas Nordborg
Added Annotation types list page
1:53 PM Changeset [826] by Nicklas Nordborg
The new collection attribute
1:52 PM Changeset [825] by Nicklas Nordborg
Added isCollection property to ColumnDef? and implemented filtering on …
1:50 PM Changeset [824] by Nicklas Nordborg
Added Metadata methods to find items implementing certain interfaces, …
10:46 AM Changeset [823] by Nicklas Nordborg
Finished documentation for biomaterials

Jun 23, 2005:

9:18 PM Changeset [822] by Nicklas Nordborg
Updated development status
4:07 PM Changeset [821] by Nicklas Nordborg
Started to write documentation for biomaterials
1:58 PM Changeset [820] by Nicklas Nordborg
Removed debug output
1:58 PM Changeset [819] by samuel
Added validation.
1:57 PM Changeset [818] by Nicklas Nordborg
Fixed switch/break bug
1:27 PM Changeset [817] by Nicklas Nordborg
All biomaterial tests are now working
12:17 PM Changeset [816] by Nicklas Nordborg
All test programs should catch Throwable instead of Exception or …
12:17 PM Changeset [815] by Nicklas Nordborg
Events now seems to work for Biomaterials
9:58 AM Changeset [814] by Nicklas Nordborg
Added test code for events and sources to extract, but there is more …

Jun 22, 2005:

4:20 PM Changeset [813] by samuel
Changed generic in ItemParameterValueData?.
4:17 PM Changeset [812] by samuel
Added parameters diagram in core.
4:04 PM Changeset [811] by Nicklas Nordborg
Remaining quantity for biomaterials is now starting to work
4:00 PM Changeset [810] by samuel
Some minor changes.
3:02 PM Changeset [809] by samuel
Changed code to better follow coding guidelines.
2:33 PM Changeset [808] by samuel
Changed code to better follow coding guidelines.
1:34 PM Changeset [807] by samuel
Changed code to follow guidelines better.
12:32 PM Changeset [806] by Nicklas Nordborg
The DbControl?.commit() method now supports saveItem/deleteItem calls …
9:26 AM Changeset [805] by samuel
Checking old version when updating.
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