Timeline



Aug 26, 2005:

8:17 PM Changeset [1141] by Nicklas Nordborg
Updated development status
3:37 PM Changeset [1140] by Nicklas Nordborg
Added fetching of spot images and test program for it
2:23 PM Changeset [1139] by Nicklas Nordborg
Added SpotImages? and test program to create spot images
11:37 AM Changeset [1138] by Johan Enell
Major changes to the plugin system
9:16 AM Changeset [1137] by Nicklas Nordborg
PlateMapping? can now take empty source plates in the apply() method

Aug 25, 2005:

3:35 PM Changeset [1136] by Nicklas Nordborg
Fixed javadoc warnings
2:59 PM Changeset [1135] by Nicklas Nordborg
Raw data is not checked agains arraydesign of raw bioassay Added test …
11:41 AM Changeset [1134] by Nicklas Nordborg
More redesign of the BasicBatcher? to make it more like the BasicItem?
10:40 AM Changeset [1133] by Gregory Vincic
Splitting Plate into Unmapped and Mapped PlateTransfers?
10:39 AM Changeset [1132] by Gregory Vincic
Initial revision
10:38 AM Changeset [1131] by Gregory Vincic
Renaming class properly
10:36 AM Changeset [1130] by Gregory Vincic
Splitting PlateTransfer? into Mapped and Unmapped PlateTransfer?
10:36 AM Changeset [1129] by Gregory Vincic
Adding resetItemsCounter()
10:33 AM Changeset [1128] by Gregory Vincic
Removing use of COMMIT_SIZE
10:32 AM Changeset [1127] by Gregory Vincic
Removing use of COMMIT_SIZE

Aug 24, 2005:

4:06 PM Changeset [1126] by Gregory Vincic
Adding createItem method and using Transfer.run( sql ) run eash transfer
3:32 PM Changeset [1125] by Nicklas Nordborg
Updated hybridizations diagram
3:27 PM Changeset [1124] by Nicklas Nordborg
Minor redesign of the batch classes First version of actually batching …
12:26 PM Changeset [1123] by Nicklas Nordborg
Removed some unnecessary code and comments from ReporterData?
12:21 PM Changeset [1122] by Nicklas Nordborg
Fixed permission problems and security holes with reporters
11:01 AM Changeset [1121] by Nicklas Nordborg
Implemented RawBioAssay? and added test class Some code for batching …
8:53 AM Changeset [1120] by Gregory Vincic
Renamed buildItem to createItem

Aug 23, 2005:

5:22 PM Changeset [1119] by Gregory Vincic
Using run() and buildItem() methods
5:22 PM Changeset [1118] by Gregory Vincic
Transfer now handles BasicItem? transfers through run()
4:04 PM Changeset [1117] by Nicklas Nordborg
Added Scan, Image and test classes
2:04 PM Changeset [1116] by Nicklas Nordborg
Implemented the rest of Hybridization and added test class for it
2:04 PM Changeset [1115] by Johan Enell
added testfiles to testflatfileparser
12:27 PM Changeset [1114] by Johan Enell
more tests
12:21 PM Changeset [1113] by Johan Enell
added default constructor for hibernate proxies
12:17 PM Changeset [1112] by Gregory Vincic
Removing id mapping through extra information in the description
11:28 AM Changeset [1111] by Gregory Vincic
Migrater now also reads base.config, removing redundant configuration …
11:26 AM Changeset [1110] by Johan Enell
changed constructor to ParameterValueData?
10:59 AM Changeset [1109] by Nicklas Nordborg
Fixed a mapping problem in PlateData?
10:50 AM Changeset [1108] by Nicklas Nordborg
First implementation of RawBioAssay? and some raw data support
10:37 AM Changeset [1107] by Johan Enell
added constructor to ParameterValueData?
10:16 AM Changeset [1106] by Johan Enell
FlatFileParser? tested

Aug 22, 2005:

8:26 PM Changeset [1105] by Nicklas Nordborg
Updated development status
3:38 PM Changeset [1104] by Gregory Vincic
Added read access to Hardware/Software? Administrator for HARDWARE and …
3:37 PM Changeset [1103] by Gregory Vincic
Seperated version from description
3:27 PM Changeset [1102] by Nicklas Nordborg
Added most data classes for the "Hybridzations and raw data" section
1:15 PM Changeset [1101] by Nicklas Nordborg
Added Hybridizations diagram
10:55 AM Changeset [1100] by Gregory Vincic
Tested and fixed role assignment in RoleTransfer?.getRoleIds()
10:30 AM Changeset [1099] by Gregory Vincic
Described how base 1 permissions are mapped to roles in BASE 2
10:12 AM Changeset [1098] by Nicklas Nordborg
Clarified the comments
9:10 AM Changeset [1097] by Gregory Vincic
Removed isPropertyTrue usage
9:08 AM Changeset [1096] by Gregory Vincic
Major rewrite of id mapping between base 1 and base 2 ids.
9:05 AM Changeset [1095] by Gregory Vincic
Initial revision
8:03 AM Changeset [1094] by Nicklas Nordborg
Removed migrate compilation from ant dist since there is a compile error

Aug 19, 2005:

6:38 PM Changeset [1093] by Johan Enell
weekend commit
5:26 PM Changeset [1092] by Johan Enell
minor update to generic in methods replaceValues and setSingleValues
5:15 PM Changeset [1091] by Johan Enell
minor update to generic in methods replaceValues and setSingleValues

Aug 18, 2005:

2:43 PM Changeset [1090] by Johan Enell
added setDefaultValue(Object defaultValue) to ParameterType?

Aug 17, 2005:

10:19 AM Changeset [1089] by Johan Enell
changed variablenames in ArrayDesignBlock?

Aug 16, 2005:

1:02 PM Changeset [1088] by Gregory Vincic
Documenting
1:01 PM Changeset [1087] by Gregory Vincic
Moved Reporter transfer prior to Plate transfer
1:00 PM Changeset [1086] by Gregory Vincic
Added id mapping for reporters
12:59 PM Changeset [1085] by Gregory Vincic
mapIds() now warns if the query is emtpy
10:49 AM Changeset [1084] by Gregory Vincic
Fixed bug in setCommonItemData(), setName was not set correctly
8:56 AM Changeset [1083] by Gregory Vincic
Added output to mapIds() and documentation
8:54 AM Changeset [1082] by Gregory Vincic
Added stop method which outputs the SELECT statement of a specific …

Aug 11, 2005:

3:25 PM Changeset [1081] by Gregory Vincic
PlateMappings? are now created and shared to everyone

Aug 10, 2005:

5:01 PM Changeset [1080] by Gregory Vincic
Documenting and cleaning up code
4:23 PM Changeset [1079] by Gregory Vincic
Documenting
4:22 PM Changeset [1078] by Gregory Vincic
Made the start() method abstract
2:40 PM Changeset [1077] by Gregory Vincic
Initial revision of PlateEventTypeTransfer?.java
2:39 PM Changeset [1076] by Gregory Vincic
Added id mapping
10:46 AM Changeset [1075] by Gregory Vincic
Sperating class inheritance from dependcy

Aug 9, 2005:

4:57 PM Changeset [1074] by Gregory Vincic
PlateTypes? are now transfered and saved. The PlateGeometry? id's are …
4:34 PM Changeset [1073] by Gregory Vincic
Initial revision
4:33 PM Changeset [1072] by Gregory Vincic
Added variable COMMON_ITEM_COLUMNS to be used in select statements in …
2:41 PM Changeset [1071] by Gregory Vincic
mapIds() now works for all commonItemTransfers which use initIdMap()
1:55 PM Changeset [1070] by Gregory Vincic
Enabled AnnotationTypes? for Item.SAMPLE and finnished …
1:36 PM Changeset [1069] by Gregory Vincic
Removed debug output
11:48 AM Changeset [1068] by Gregory Vincic
Made next() method a bit quicker.
11:48 AM Changeset [1067] by Gregory Vincic
Removed users now also get homedirectories
9:45 AM Changeset [1066] by Gregory Vincic
Quotas are now set for users based on their previous fileQuota and the …
9:14 AM Changeset [1065] by Gregory Vincic
Added finalizeQuota to UserTransfer?
9:14 AM Changeset [1064] by Gregory Vincic
Added Quota section

Aug 8, 2005:

1:57 PM Changeset [1063] by Gregory Vincic
Group permissions are merged with user permissions
1:45 PM Changeset [1062] by Gregory Vincic
Added a short description for migration tool specification
11:07 AM Changeset [1061] by Gregory Vincic
Users now get assigned to the UNRESTRICTED quota, and should at the …

Aug 5, 2005:

6:26 PM Changeset [1060] by Johan Enell
Features added to ArrayDesign? needs testing
5:40 PM Changeset [1059] by Gregory Vincic
setCommonItemData now checks if name is empty and sets a default value …
3:41 PM Changeset [1058] by Gregory Vincic
Added getIdMap and initIdMap to Transfer.java. Refactored other …
1:35 PM Changeset [1057] by Gregory Vincic
Fixed description resetting in transferFile()
10:59 AM Changeset [1056] by Gregory Vincic
Rearranged transfer order in Migrater

Aug 4, 2005:

5:53 PM Changeset [1055] by Gregory Vincic
Initial revision of ExtractTransfer?.java. Also fixed quantity …
4:41 PM Changeset [1054] by Gregory Vincic
Added a note about the calculation of totalQuantity during migration …
2:56 PM Changeset [1053] by Gregory Vincic
Commented out AnnotationTransfer? since it's not finished
2:48 PM Changeset [1052] by Gregory Vincic
Excluded Annotations for now
2:40 PM Changeset [1051] by Gregory Vincic
Initial revision
2:30 PM Changeset [1050] by Jari Häkkinen
Changed base.version name. Fixed 'ant migrate' to depend on buildning …
2:28 PM Changeset [1049] by Gregory Vincic
Creation date of samples now mappes the sampleDate in base 1. If …
2:17 PM Changeset [1048] by Jari Häkkinen
Added information about demo server and changed tar-ball links.
1:16 PM Changeset [1047] by Gregory Vincic
Initial revision of MeasuredBioMaterialTransfer?.java
11:56 AM Changeset [1046] by Gregory Vincic
Added method getSampleIdMap
11:48 AM Changeset [1045] by Gregory Vincic
Fixing warning for return value of getRoleIdMap
11:46 AM Changeset [1044] by Gregory Vincic
Documenting and cleaning up code
11:42 AM Changeset [1043] by Gregory Vincic
Initial revision for SampleTransfer?.java
10:49 AM Changeset [1042] by Gregory Vincic
Initial revision for LabelTransfer?.java and chmod now sets world …

Aug 3, 2005:

1:58 PM Changeset [1041] by Gregory Vincic
Initial revision of AnnotationTypeTransfer?.java
12:27 PM Changeset [1040] by Gregory Vincic
Added SoftwareTransfer?.java, version numbers for both hardware and …
12:00 PM Changeset [1039] by Gregory Vincic
CommonItemTransfer? now extends SharedItemTransfer? and …
10:54 AM Changeset [1038] by Gregory Vincic
Added CommonItemTransfer?.java. SharedItemTransfer? now extends …

Aug 2, 2005:

5:19 PM Changeset [1037] by Gregory Vincic
Documenting
5:13 PM Changeset [1036] by Gregory Vincic
Documenting
4:44 PM Changeset [1035] by Gregory Vincic
Initial revision
4:35 PM Changeset [1034] by Gregory Vincic
Initial revision
4:30 PM Changeset [1033] by Gregory Vincic
Documenting
4:19 PM Changeset [1032] by Gregory Vincic
Documenting
3:59 PM Changeset [1031] by Gregory Vincic
Fixing counter bug in the next() method
1:52 PM Changeset [1030] by Gregory Vincic
Added exclude properties to migrate.properties.in
1:00 PM Changeset [1029] by Gregory Vincic
Moving Roles And Permissions section to seperate file.

Aug 1, 2005:

2:21 PM Changeset [1028] by Gregory Vincic
Removing PermissionUtil?.java
2:21 PM Changeset [1027] by Gregory Vincic
Reorganized content from PermissionUtil?.java into RoleTransfer? and …
1:45 PM Changeset [1026] by Johan Enell
Changed multiplicity for arraydesignblocks

Jul 29, 2005:

5:29 PM Changeset [1025] by samuel
Started on the description of how to create a plugin.
5:19 PM Changeset [1024] by Gregory Vincic
Initial revision of ProtocolFileTransfer?.java
5:13 PM Changeset [1023] by samuel
Updated Plugin interface.
5:11 PM Changeset [1022] by samuel
Change comments and added that there should be an new method.
4:37 PM Changeset [1021] by samuel
Addad Samuel to author.
3:49 PM Changeset [1020] by samuel
Added diagram over plugin usage.
3:09 PM Changeset [1019] by Gregory Vincic
Adding main documentation
3:04 PM Changeset [1018] by Gregory Vincic
Initial revision of ProtocolTypeTransfer?.java
1:39 PM Changeset [1017] by Gregory Vincic
Added md5sum method and implemented transferFile method in FileTransfer?.
11:31 AM Changeset [1016] by Gregory Vincic
Initial version of PhysicalFileTransfer?.java
9:41 AM Changeset [1015] by Gregory Vincic
Added saveFile to FileTransfer?.java
8:53 AM Changeset [1014] by Gregory Vincic
Adding FileTransfer?.java and UploadTransfer?.java is now called …
8:51 AM Changeset [1013] by Gregory Vincic
Added copyFiles and moveFiles methods
8:27 AM Changeset [1012] by Gregory Vincic
Fixed execution order for transfers so that userIdMap and groupIdMap …

Jul 28, 2005:

5:00 PM Changeset [1011] by Gregory Vincic
Added UploadTransfer?.java
3:48 PM Changeset [1010] by Gregory Vincic
Initial revision
3:35 PM Changeset [1009] by samuel
Updated to current.
3:33 PM Changeset [1008] by samuel
Added PluginParameter?.
2:50 PM Changeset [1007] by Gregory Vincic
Added NewsTransfer?.java
2:19 PM Changeset [1006] by Gregory Vincic
Adding copyright statement
2:10 PM Changeset [1005] by Gregory Vincic
Design change

Jul 27, 2005:

5:12 PM Changeset [1004] by samuel
Fixed links and added text.
5:11 PM Changeset [1003] by samuel
Updated to current status.
5:10 PM Changeset [1002] by samuel
Updated parameters.
1:51 PM Changeset [1001] by samuel
Added descriptions.
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