Timeline
Sep 8, 2005:
- 7:02 PM Changeset [1309] by
- ReporterMap? test
- 4:47 PM Changeset [1308] by
- Documenting
- 4:41 PM Changeset [1307] by
- Documenting
- 4:34 PM Changeset [1306] by
- Adding getProtocolTypeById and getPlateTypeById and documenting
- 4:22 PM Changeset [1305] by
- Documenting
- 4:21 PM Changeset [1304] by
- Documenting
- 3:44 PM Changeset [1303] by
- Fixing bug for reporterId and wellId's
- 3:43 PM Changeset [1302] by
- Changing createItem method to protected
- 3:43 PM Changeset [1301] by
- Moving null value check into saveItem() in run() method
- 3:42 PM Changeset [1300] by
- Documenting
- 3:40 PM Changeset [1299] by
- Fixed bug where properties in ArrayDesignBlock:s didn't get updated
- 3:23 PM Changeset [1298] by
- Fixed javadoc warnings
- 2:34 PM Changeset [1297] by
- 1:33 PM Changeset [1296] by
- Documenting
- 1:01 PM Changeset [1295] by
- Documenting
- 12:49 PM Changeset [1294] by
- Added success parameter to AbstractFlatFileImporter?.end() method
- 12:42 PM Changeset [1293] by
- Changed TestReporter? to display other columns.
- 12:31 PM Changeset [1292] by
- Added "Update existing reporter" option to ReporterFlatFileParser?
- 12:07 PM Changeset [1291] by
- Documenting
- 12:02 PM Changeset [1290] by
- Added ConsoleProgressReporter? and updated test programs to use it
- 11:30 AM Changeset [1289] by
- Fixed bug in FlatFileParser?
- 11:28 AM Changeset [1288] by
- Fixing setArraySlide for Hybridizations
- 11:27 AM Changeset [1287] by
- Fixing log output in the select method
- 11:20 AM Changeset [1286] by
- Fixed ant dist to include documentation, etc.
- 10:41 AM Changeset [1285] by
- Added JDOM
- 10:39 AM Changeset [1284] by
- Added license texts and information about 3:rd-party components
- 10:35 AM Changeset [1283] by
- Fixed new call to BlockInfo?
- 10:08 AM Changeset [1282] by
- Fixed new call to BlockInfo?
- 10:05 AM Changeset [1281] by
- Removing PhysicalFileTransfer?.java
- 10:03 AM Changeset [1280] by
- ArrayDesignTransfer? now seems to work, transferring the basic data
- 10:01 AM Changeset [1279] by
- Added getReporterById() method
- 10:00 AM Changeset [1278] by
- Added a few columns to the sql query
- 9:59 AM Changeset [1277] by
- Added getPlateById() method
- 9:58 AM Changeset [1276] by
- Added getMaxId() method
- 9:35 AM Changeset [1275] by
- Added support for min and max data columns parameters to …
Sep 7, 2005:
- 5:17 PM Changeset [1274] by
- ReporterMap? importer added
- 3:57 PM Changeset [1273] by
- Added LineType? enum to FlatFileParser? instead of using int constants
- 3:28 PM Changeset [1272] by
- Added more constructors to ParameterType:s
- 2:12 PM Changeset [1271] by
- Initial revision
- 1:33 PM Changeset [1270] by
- Documented Abstract- and ReporterFlatFileImporter?.
- 12:27 PM Changeset [1269] by
- Added AbstractPlugin?.validateRequestParameters and javadoc
- 11:45 AM Changeset [1268] by
- Fixed bad image
- 11:29 AM Changeset [1267] by
- Added Plugin.getItems() method and changed about() and type() to …
- 9:06 AM Changeset [1266] by
- Fixed problem with ItemParameterValue? mapping
Sep 6, 2005:
- 8:41 PM Changeset [1265] by
- Fixed a NPE in ReporterFlatFileImporter? Added better constructors to …
- 4:53 PM Changeset [1264] by
- Test job
- 4:11 PM Changeset [1263] by
- Added import of extended columns to ReporterFlatFileImporter?
- 4:06 PM Changeset [1262] by
- Removing verifyMappedIds()
- 4:00 PM Changeset [1261] by
- Saving arrayDesign before adding block
- 3:50 PM Changeset [1260] by
- Adding uggly fix to the problem of missing items from queries
- 2:44 PM Changeset [1259] by
- Cleaning up requirements section
- 2:17 PM Changeset [1258] by
- Test reporter import now delete it's job
- 2:07 PM Changeset [1257] by
- create and delete in TestJob?
- 1:49 PM Changeset [1256] by
- ReporterFlatFileImporter? now has a working skeleton. Added test class.
- 1:47 PM Changeset [1255] by
- Fixed dependency check
- 1:02 PM Changeset [1254] by
- Adding createItem and getPlateList
- 11:12 AM Changeset [1253] by
- added ProgressReporter? parameter to Job.execute()
- 11:08 AM Changeset [1252] by
- added ProgressReporter? parameter to Job.execute()
- 11:00 AM Changeset [1251] by
- Plugin configuratin is tested
- 10:29 AM Changeset [1250] by
- Documenting
- 10:28 AM Changeset [1249] by
- Initial revision of ArraySlide? and ArrayBatchTransfer?
- 9:53 AM Changeset [1248] by
- ReporterFlatFileImporter? is now ready to be tested
- 9:34 AM Changeset [1247] by
- added throws baseexception in the interface
Sep 5, 2005:
- 8:34 PM Changeset [1246] by
- Removing @author statements from methods
- 7:50 PM Changeset [1245] by
- Adding dependency checking
- 4:09 PM Changeset [1244] by
- Readded AbstractFlatFileImporter? and ReporterFlatFileImporter?.
- 3:56 PM Changeset [1243] by
- added the build folder to svn:ignore
- 3:53 PM Changeset [1242] by
- PluginDefinition? tested
- 3:40 PM Changeset [1241] by
- id tag updated
- 3:38 PM Changeset [1240] by
- NullPlugin? created
- 2:14 PM Changeset [1239] by
- AbstractPlugin? created
- 1:57 PM Changeset [1238] by
- Implemented core part of the plugin system
- 1:42 PM Changeset [1237] by
- Adding SampleTissue?
- 12:11 PM Changeset [1236] by
- Documenting
- 12:10 PM Changeset [1235] by
- Initial revision
- 12:09 PM Changeset [1234] by
- Initial revision
- 12:08 PM Changeset [1233] by
- Renamming getSelects to countRows
- 11:56 AM Changeset [1232] by
- Documenting
- 11:55 AM Changeset [1231] by
- Documenting
- 11:54 AM Changeset [1230] by
- Documenting
- 11:54 AM Changeset [1229] by
- Documenting
- 11:53 AM Changeset [1228] by
- Using setCommonData
- 11:53 AM Changeset [1227] by
- Documenting
- 11:52 AM Changeset [1226] by
- Documenting
- 11:36 AM Changeset [1225] by
- Using incode class in quickstart
- 11:24 AM Changeset [1224] by
- Adding requirements and clarifying quickstart
- 11:21 AM Changeset [1223] by
- Documenting
- 9:49 AM Changeset [1222] by
- Documenting
- 9:27 AM Changeset [1221] by
- Fixing stop call
- 9:26 AM Changeset [1220] by
- Documenting
- 9:02 AM Changeset [1219] by
- Removed PluginJobData? and made JobData? have a type and optional …
- 8:49 AM Changeset [1218] by
- Documenting
- 8:23 AM Changeset [1217] by
- Set MappedPlates? to no, it's not working properly
- 8:01 AM Changeset [1216] by
- Added ArrayBatch?- and ArrayDesignTransfer? classes
Sep 2, 2005:
- 5:05 PM Changeset [1215] by
- getters in About
- 5:03 PM Changeset [1214] by
- updated plugin design
- 4:51 PM Changeset [1213] by
- just a small syntax update
- 4:04 PM Changeset [1212] by
- Begin implementation of new plugin system
- 3:55 PM Changeset [1211] by
- updated plugin design
- 1:56 PM Changeset [1210] by
- Initial revision
- 1:56 PM Changeset [1209] by
- Including Array*
- 1:54 PM Changeset [1208] by
- Bug fix, Protocols do not have to have a file associated to them
- 1:54 PM Changeset [1207] by
- Adding ArrayBatch? and ArrayDesign? Transfer
- 1:53 PM Changeset [1206] by
- Initial revision
- 1:50 PM Changeset [1205] by
- New design of the plugin system
- 1:25 PM Changeset [1204] by
- updated plugin design
- 1:04 PM Changeset [1203] by
- Fixing bug in chown
- 1:03 PM Changeset [1202] by
- Saving file within createItem
- 1:03 PM Changeset [1201] by
- Added some logging
- 1:02 PM Changeset [1200] by
- Using DELIMITER for separation of data in the description
- 1:01 PM Changeset [1199] by
- Commenting
- 1:01 PM Changeset [1198] by
- Nicer tissue string
- 1:00 PM Changeset [1197] by
- Only transfer files that are of size 0
- 1:00 PM Changeset [1196] by
- Added filechecking through md5
- 12:59 PM Changeset [1195] by
- Added a PhysicalFileTransfer? after UploadTransfer? is done
- 12:58 PM Changeset [1194] by
- Initial revision
- 11:49 AM Changeset [1193] by
- Plates are now destroyed after transfer
Sep 1, 2005:
- 1:40 PM Changeset [1192] by
- Added missing parameter types and renamed TextParameterType? to …
- 1:30 PM Changeset [1191] by
- Removed unneccessary code from Type
- 1:23 PM Changeset [1190] by
- Changed ParameterType? (and subclasses) to use the new Values class. …
- 12:23 PM Changeset [1189] by
- removed value is now set
- 11:11 AM Changeset [1188] by
- Added Values class and made Annotation and AnnotationType? use it.
- 10:31 AM Changeset [1187] by
- Removing TODO comments
- 8:57 AM Changeset [1186] by
- Updated development status. Made Parameters (9) and Plugins execution …
Aug 31, 2005:
- 8:35 PM Changeset [1185] by
- Updated development status
- 6:08 PM Changeset [1184] by
- Adding Protocols section
- 3:54 PM Changeset [1183] by
- Fixing stop statement
- 3:44 PM Changeset [1182] by
- Added Directory.exists() method
- 3:42 PM Changeset [1181] by
- Fixing stop statement
- 3:24 PM Changeset [1180] by
- Added Job and made lots of changes to the ParameterType? and …
- 1:33 PM Changeset [1179] by
- Changes to the plugin/jobs diagram
- 11:28 AM Changeset [1178] by
- Added uploadFT to ProtocolFileTransfer?
- 11:27 AM Changeset [1177] by
- Added uploadFT to ProtocolFileTransfer?
- 11:25 AM Changeset [1176] by
- Added getFileByName
- 9:55 AM Changeset [1175] by
- Fixed missing externalId
- 9:12 AM Changeset [1174] by
- Fixed stop() call
Aug 30, 2005:
- 4:56 PM Changeset [1173] by
- Added setDescription
- 4:05 PM Changeset [1172] by
- Oops, here is the new JobData? also
- 4:04 PM Changeset [1171] by
- First version of JobData?
- 3:18 PM Changeset [1170] by
- Major rewrite and bug fix
- 3:18 PM Changeset [1169] by
- Added some logging
- 3:17 PM Changeset [1168] by
- 3:16 PM Changeset [1167] by
- Changing connect() and configure() to protected methods for …
- 3:15 PM Changeset [1166] by
- Major rewrite, using run() in Transfer.java
- 3:14 PM Changeset [1165] by
- Major rewrite, using run() in Transfer.java
- 3:13 PM Changeset [1164] by
- Rewrote output decisions in run()
- 3:12 PM Changeset [1163] by
- Added check for protocolFileTransfer in constructor
- 3:11 PM Changeset [1162] by
- Adding logging of which users are created
- 3:10 PM Changeset [1161] by
- Initial revision
- 3:10 PM Changeset [1160] by
- Fixing stop call
- 3:09 PM Changeset [1159] by
- Documenting
- 3:08 PM Changeset [1158] by
- Adding stop(method, str) and log(method,e)
- 2:51 PM Changeset [1157] by
- Fixed javadoc warnings
- 2:12 PM Changeset [1156] by
- Implemented methods for inheriting annotations and fixed some errors …
- 11:53 AM Changeset [1155] by
- Removed an old TODO
- 11:52 AM Changeset [1154] by
- Finished isUsed() method for Protocol
- 11:48 AM Changeset [1153] by
- Fixed error in Array slides diagram
- 11:45 AM Changeset [1152] by
- Fixed isUsed method in Hardware and inverse mappings for ArrayDesign? …
- 11:22 AM Changeset [1151] by
- Removed an old TODO
- 11:21 AM Changeset [1150] by
- Removed unused code
- 11:19 AM Changeset [1149] by
- Fixed isUsed and getReporter in Well
- 11:06 AM Changeset [1148] by
- Fixed mappings for Plate, PlateParents? and PlateMapping?
- 9:08 AM Changeset [1147] by
- Added getAnnotatableParents to Annotatable interface
Aug 29, 2005:
- 9:03 PM Changeset [1146] by
- Check that the database supports transactions at startup
- 3:46 PM Changeset [1145] by
- Updated raw data uml diagram
- 3:45 PM Changeset [1144] by
- Updated batching documentation
- 1:36 PM Changeset [1143] by
- Fixed batching of Features and AffyFeatures?
- 9:20 AM Changeset [1142] by
- Added RawDataUtil? and documented some methods for raw data and reporters
Aug 26, 2005:
- 8:17 PM Changeset [1141] by
- Updated development status
- 3:37 PM Changeset [1140] by
- Added fetching of spot images and test program for it
- 2:23 PM Changeset [1139] by
- Added SpotImages? and test program to create spot images
- 11:37 AM Changeset [1138] by
- Major changes to the plugin system
- 9:16 AM Changeset [1137] by
- PlateMapping? can now take empty source plates in the apply() method
Aug 25, 2005:
- 3:35 PM Changeset [1136] by
- Fixed javadoc warnings
- 2:59 PM Changeset [1135] by
- Raw data is not checked agains arraydesign of raw bioassay Added test …
- 11:41 AM Changeset [1134] by
- More redesign of the BasicBatcher? to make it more like the BasicItem? …
- 10:40 AM Changeset [1133] by
- Splitting Plate into Unmapped and Mapped PlateTransfers?
- 10:39 AM Changeset [1132] by
- Initial revision
- 10:38 AM Changeset [1131] by
- Renaming class properly
- 10:36 AM Changeset [1130] by
- Splitting PlateTransfer? into Mapped and Unmapped PlateTransfer?
- 10:36 AM Changeset [1129] by
- Adding resetItemsCounter()
- 10:33 AM Changeset [1128] by
- Removing use of COMMIT_SIZE
- 10:32 AM Changeset [1127] by
- Removing use of COMMIT_SIZE
Aug 24, 2005:
- 4:06 PM Changeset [1126] by
- Adding createItem method and using Transfer.run( sql ) run eash transfer
- 3:32 PM Changeset [1125] by
- Updated hybridizations diagram
- 3:27 PM Changeset [1124] by
- Minor redesign of the batch classes First version of actually batching …
- 12:26 PM Changeset [1123] by
- Removed some unnecessary code and comments from ReporterData?
- 12:21 PM Changeset [1122] by
- Fixed permission problems and security holes with reporters
- 11:01 AM Changeset [1121] by
- Implemented RawBioAssay? and added test class Some code for batching …
- 8:53 AM Changeset [1120] by
- Renamed buildItem to createItem
Aug 23, 2005:
- 5:22 PM Changeset [1119] by
- Using run() and buildItem() methods
- 5:22 PM Changeset [1118] by
- Transfer now handles BasicItem? transfers through run()
- 4:04 PM Changeset [1117] by
- Added Scan, Image and test classes
- 2:04 PM Changeset [1116] by
- Implemented the rest of Hybridization and added test class for it
- 2:04 PM Changeset [1115] by
- added testfiles to testflatfileparser
- 12:27 PM Changeset [1114] by
- more tests
- 12:21 PM Changeset [1113] by
- added default constructor for hibernate proxies
- 12:17 PM Changeset [1112] by
- Removing id mapping through extra information in the description
- 11:28 AM Changeset [1111] by
- Migrater now also reads base.config, removing redundant configuration …
- 11:26 AM Changeset [1110] by
- changed constructor to ParameterValueData?
- 10:59 AM Changeset [1109] by
- Fixed a mapping problem in PlateData?
- 10:50 AM Changeset [1108] by
- First implementation of RawBioAssay? and some raw data support
- 10:37 AM Changeset [1107] by
- added constructor to ParameterValueData?
- 10:16 AM Changeset [1106] by
- FlatFileParser? tested
Aug 22, 2005:
- 8:26 PM Changeset [1105] by
- Updated development status
- 3:38 PM Changeset [1104] by
- Added read access to Hardware/Software? Administrator for HARDWARE and …
- 3:37 PM Changeset [1103] by
- Seperated version from description
- 3:27 PM Changeset [1102] by
- Added most data classes for the "Hybridzations and raw data" section
- 1:15 PM Changeset [1101] by
- Added Hybridizations diagram
- 10:55 AM Changeset [1100] by
- Tested and fixed role assignment in RoleTransfer?.getRoleIds()
- 10:30 AM Changeset [1099] by
- Described how base 1 permissions are mapped to roles in BASE 2
- 10:12 AM Changeset [1098] by
- Clarified the comments
- 9:10 AM Changeset [1097] by
- Removed isPropertyTrue usage
- 9:08 AM Changeset [1096] by
- Major rewrite of id mapping between base 1 and base 2 ids.
- 9:05 AM Changeset [1095] by
- Initial revision
- 8:03 AM Changeset [1094] by
- Removed migrate compilation from ant dist since there is a compile error
Aug 19, 2005:
- 6:38 PM Changeset [1093] by
- weekend commit
- 5:26 PM Changeset [1092] by
- minor update to generic in methods replaceValues and setSingleValues
- 5:15 PM Changeset [1091] by
- minor update to generic in methods replaceValues and setSingleValues
Aug 18, 2005:
- 2:43 PM Changeset [1090] by
- added setDefaultValue(Object defaultValue) to ParameterType?
Aug 17, 2005:
- 10:19 AM Changeset [1089] by
- changed variablenames in ArrayDesignBlock?
Aug 16, 2005:
- 1:02 PM Changeset [1088] by
- Documenting
- 1:01 PM Changeset [1087] by
- Moved Reporter transfer prior to Plate transfer
- 1:00 PM Changeset [1086] by
- Added id mapping for reporters
- 12:59 PM Changeset [1085] by
- mapIds() now warns if the query is emtpy
- 10:49 AM Changeset [1084] by
- Fixed bug in setCommonItemData(), setName was not set correctly
- 8:56 AM Changeset [1083] by
- Added output to mapIds() and documentation
- 8:54 AM Changeset [1082] by
- Added stop method which outputs the SELECT statement of a specific …
Aug 11, 2005:
- 3:25 PM Changeset [1081] by
- PlateMappings? are now created and shared to everyone
Aug 10, 2005:
- 5:01 PM Changeset [1080] by
- Documenting and cleaning up code
- 4:23 PM Changeset [1079] by
- Documenting
- 4:22 PM Changeset [1078] by
- Made the start() method abstract
- 2:40 PM Changeset [1077] by
- Initial revision of PlateEventTypeTransfer?.java
- 2:39 PM Changeset [1076] by
- Added id mapping
- 10:46 AM Changeset [1075] by
- Sperating class inheritance from dependcy
Aug 9, 2005:
- 4:57 PM Changeset [1074] by
- PlateTypes? are now transfered and saved. The PlateGeometry? id's are …
- 4:34 PM Changeset [1073] by
- Initial revision
- 4:33 PM Changeset [1072] by
- Added variable COMMON_ITEM_COLUMNS to be used in select statements in …
- 2:41 PM Changeset [1071] by
- mapIds() now works for all commonItemTransfers which use initIdMap()
- 1:55 PM Changeset [1070] by
- Enabled AnnotationTypes? for Item.SAMPLE and finnished …
- 1:36 PM Changeset [1069] by
- Removed debug output
- 11:48 AM Changeset [1068] by
- Made next() method a bit quicker.
- 11:48 AM Changeset [1067] by
- Removed users now also get homedirectories
- 9:45 AM Changeset [1066] by
- Quotas are now set for users based on their previous fileQuota and the …
- 9:14 AM Changeset [1065] by
- Added finalizeQuota to UserTransfer?
- 9:14 AM Changeset [1064] by
- Added Quota section
Note: See TracTimeline
for information about the timeline view.
