Timeline



May 2, 2006:

3:45 PM Changeset [2208] by dominic

Apr 28, 2006:

4:04 PM Changeset [2207] by Nicklas Nordborg
Started to add some database utility methods with the final goal to be …
3:49 PM Ticket #142 (Changing Preference to S or XS prevents from Seeing Annotations ...) closed by Martin Svensson
fixed: (In [2206]) Fixes #142. Changing Preference to S or XS prevents from …
3:49 PM Changeset [2206] by Martin Svensson
Fixes #142. Changing Preference to S or XS prevents from Seeing …
1:59 PM Changeset [2205] by Johan Enell
Base1PluginExecuter kan run executables and upload the files created …
1:55 PM Ticket #162 (Install help texts in flexisble way) closed by Martin Svensson
fixed: (In [2204]) Fixes #162. Install help texts in flexible way. Also a …
1:55 PM Changeset [2204] by Martin Svensson
Fixes #162. Install help texts in flexible way. Also a couple of …
11:31 AM Ticket #209 (Add JepMapper to FlatFileParser) created by Nicklas Nordborg
The JepMapper? would take a JEP expression and use to calculate data …
11:20 AM Ticket #1 (column names in flatfile parser) closed by Nicklas Nordborg
fixed: (In [2203]) Fixes #1: column names in flatfile parser Also changed …
11:20 AM Changeset [2203] by Nicklas Nordborg
Fixes #1: column names in flatfile parser Also changed migration so it …

Apr 27, 2006:

4:16 PM Changeset [2202] by Jari Häkkinen
Removed schema change flag for RC1.2200.
3:53 PM Changeset [2201] by Jari Häkkinen
Updated demo server.
2:19 PM Changeset [2200] by Jari Häkkinen
Fixed spelling errors.
12:18 PM Changeset [2199] by Nicklas Nordborg
Fixes #205: Directories are handled as selected even if they are …
12:18 PM Ticket #205 (Directories are handled as selected even if they are unticked in the ...) closed by Nicklas Nordborg
fixed: (In [2199]) Fixes #205: Directories are handled as selected even if …
12:04 PM Ticket #208 (Parametervisibility when running a plugin) closed by Nicklas Nordborg
fixed: (In [2198]) Fixes #208: Parameter visibility when running a plugin
12:04 PM Changeset [2198] by Nicklas Nordborg
Fixes #208: Parameter visibility when running a plugin
11:02 AM Ticket #194 (Permission denied: Not allowed to use B) closed by Nicklas Nordborg
fixed: (In [2197]) Fixes #194: Permission denied: Not allowed to use B
11:02 AM Changeset [2197] by Nicklas Nordborg
Fixes #194: Permission denied: Not allowed to use B
10:43 AM Ticket #208 (Parametervisibility when running a plugin) created by Johan Enell
Parameters can be created with a 'null' label. They shouldnt be …
9:23 AM Ticket #207 (Display the logged in user's permissions on items) created by Nicklas Nordborg
It would be useful to know the permission one has on each item, both …
9:10 AM Ticket #103 (Display name of current item in 'Set access permissions' dialog) closed by Martin Svensson
fixed: (In [2196]) Fixes #103 Display name of current item in 'Set access …
9:10 AM Changeset [2196] by Martin Svensson
Fixes #103 Display name of current item in 'Set access permissions' dialog
9:09 AM Ticket #206 (Display and filter on permisssion in lists) created by Nicklas Nordborg
This is very annoying when these listings are used for linking item A …
8:42 AM Ticket #205 (Directories are handled as selected even if they are unticked in the ...) created by Martin Svensson
View->Files A directory is handled as selected after it has been …

Apr 26, 2006:

4:03 PM Tickets #186,​152 batch updated by Nicklas Nordborg
fixed: (In [2195]) Fixes #186 and #152 * The InteractivePlugin?.isInContext …
4:03 PM Changeset [2195] by Nicklas Nordborg
Fixes #186 and #152 * The InteractivePlugin?.isInContext should return …
3:07 PM Ticket #181 (Import a plug-in configuration file from BASE 1) closed by Johan Enell
duplicate: This ticket is closed and moved to ticket #204.
3:05 PM Ticket #204 (Base1 plug-in runner) created by Johan Enell
Base2 should be able to run old base1 plug-ins. Create a plug-in that …
2:56 PM Ticket #203 (Infinite maxlength on StringParameterType) created by Johan Enell
Setting maxlength to null on a StringParameterType? means that the …
2:54 PM Ticket #192 (Analysis plugins that adds data to an experiment can't commit if the ...) closed by Nicklas Nordborg
fixed: (In [2194]) Fixes #192: Analysis plugins that adds data to an …
2:54 PM Changeset [2194] by Nicklas Nordborg
Fixes #192: Analysis plugins that adds data to an experiment can't …
2:25 PM Changeset [2193] by Nicklas Nordborg
Fixed compilation error in test classes
1:09 PM Ticket #135 (Write documentation: 3c) Internals of the core API - Plugin system) closed by Nicklas Nordborg
fixed: (In [2192]) Fixes #135: Write documentation: 3c) Internals of the core …
1:09 PM Changeset [2192] by Nicklas Nordborg
Fixes #135: Write documentation: 3c) Internals of the core API - …

Apr 25, 2006:

4:31 PM Changeset [2191] by Martin Svensson
Fixes #156 second part. Now it's possible to overwrite file if the …
4:31 PM Ticket #156 (Creating a new file with the same name as a previously deleted file ...) closed by Martin Svensson
fixed: (In [2191]) Fixes #156 second part. Now it's possible to overwrite …
4:08 PM Ticket #182 (Allow plugin parameters to use enumerations where one value is ...) closed by Nicklas Nordborg
fixed: (In [2190]) Fixes #182: Allow plugin parameters to use enumerations …
4:08 PM Changeset [2190] by Nicklas Nordborg
Fixes #182: Allow plugin parameters to use enumerations where one …
3:01 PM Changeset [2189] by Nicklas Nordborg
Added option to display toolbars with or without images and/or text.
2:37 PM Changeset [2188] by Nicklas Nordborg
Check for null before printing to console
2:37 PM Ticket #202 (TestPrintMapFlatFileImporter throws exception: Import failed on line ...) created by Nicklas Nordborg
2:33 PM Changeset [2187] by Nicklas Nordborg
Fixed bug in how TestExperiment? use IntensityCalculatorPlugin?
2:22 PM Ticket #85 (Import plugins should specify filter for FileType) closed by Nicklas Nordborg
fixed: (In [2186]) Fixes #85: Import plugins should specify filter for …
2:22 PM Changeset [2186] by Nicklas Nordborg
Fixes #85: Import plugins should specify filter for FileType? Also …
12:51 PM Ticket #201 (Experiment directory) created by Johan Enell
An experiment should have a directory tied to it.
10:00 AM Ticket #200 (Add 'Expression builder' interface) created by Nicklas Nordborg
To make it easier to build expressions for those who don't want to …
9:58 AM Ticket #199 (Use reporter lists in filter for bioassay sets) created by Nicklas Nordborg
This is currently not supported since it is not possible to access …
9:57 AM Ticket #125 (Create filtered bioassay sets) closed by Nicklas Nordborg
fixed: (In [2185]) Fixes #125: Create filtered bioassay sets
9:57 AM Changeset [2185] by Nicklas Nordborg
Fixes #125: Create filtered bioassay sets

Apr 24, 2006:

4:03 PM Changeset [2184] by Nicklas Nordborg
Added filter image
3:59 PM Changeset [2183] by Nicklas Nordborg
First version of filtering a bioassayset.
3:00 PM Ticket #198 (New PluginDefinition name) created by Johan Enell
When creating a new PluginDefinition? there is now way of editing the name.
2:43 PM Changeset [2182] by Martin Svensson
Made some minor improvments on the HelpExporter?- and HelpImporter? plugin.
2:38 PM Ticket #197 (Submenu onClick) created by Johan Enell
When clicking on a submanu in a menu the submenu should expand/collaps.
1:40 PM Ticket #196 (Transformation.newProduct should create child BioAssays if possible) created by Nicklas Nordborg
If a transformation doesn't affect the number of child bioassays, such …
10:36 AM Changeset [2181] by Jari Häkkinen
Demo server updated.
10:15 AM Changeset [2180] by Jari Häkkinen
Fixed cross references within doc and added info regarding MySQL 5.0

Apr 21, 2006:

4:25 PM Changeset [2179] by Martin Svensson
Fixes #178 Create plugin for importing help texts
4:25 PM Ticket #178 (Create plugin for importing help texts) closed by Martin Svensson
fixed: (In [2179]) Fixes #178 Create plugin for importing help texts
3:04 PM Changeset [2178] by Nicklas Nordborg
Fixed margin width of footnote page
3:02 PM Changeset [2177] by Nicklas Nordborg
Bad links and popup window size
2:42 PM Changeset [2176] by Nicklas Nordborg
Fixes first part of ticket #156: Creating a new file with the same …
2:25 PM Changeset [2175] by Nicklas Nordborg
Fixed some IE related display anomalies Added some more icons
1:28 PM Ticket #60 (BioAssay data export) closed by Nicklas Nordborg
fixed: (In [2174]) Fixes #60: BioAssay? data export
1:27 PM Changeset [2174] by Nicklas Nordborg
Fixes #60: BioAssay? data export
9:34 AM Changeset [2173] by Nicklas Nordborg
Fixed some vertical alignment problems of the new icons. Added icons …

Apr 20, 2006:

4:59 PM Changeset [2172] by Martin Svensson
Added option to create a new HelpItem? if the database doesn't contain …
4:08 PM Ticket #43 (New icons in web interface) closed by Nicklas Nordborg
fixed: (In [2171]) Fixes #43: New icons in web interface
4:08 PM Changeset [2171] by Nicklas Nordborg
Fixes #43: New icons in web interface
2:25 PM Changeset [2170] by Martin Svensson
Added a method to validate a XML-inputstream
10:45 AM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) created by Nicklas Nordborg
In the current implementation you must first check the item and then …
8:48 AM Ticket #148 (Should read permission in BASE 1 be migrated as read/use permission in ...) closed by Nicklas Nordborg
fixed: (In [2169]) Fixes #148: Should read permission in BASE 1 be migrated …
8:48 AM Changeset [2169] by Nicklas Nordborg
Fixes #148: Should read permission in BASE 1 be migrated as read/use …
8:33 AM Changeset [2168] by Nicklas Nordborg
Made ExampleImporter? an AutoDetectingImporter?

Apr 19, 2006:

4:06 PM Ticket #193 (Nullpointer exception when running an AutoDetectImporter plugin) closed by Nicklas Nordborg
fixed: (In [2167]) Fixes #193: Nullpointer exception when running an …
4:05 PM Changeset [2167] by Nicklas Nordborg
Fixes #193: Nullpointer exception when running an AutoDetectImporter? plugin
3:30 PM Tickets #96,​158 batch updated by Nicklas Nordborg
fixed: (In [2166]) Fixes #96 and #158: * Inherit annotations * Resizable …
3:30 PM Changeset [2166] by Nicklas Nordborg
Fixes #96 and #158: * Inherit annotations * Resizable annotation tab …
3:11 PM Ticket #194 (Permission denied: Not allowed to use B) created by Nicklas Nordborg
Happens when a user has been given WRITE permission to one item (A), …
11:00 AM Ticket #193 (Nullpointer exception when running an AutoDetectImporter plugin) created by Martin Svensson
Running an AutoDectectImporter? plugin that has no configuration …
9:34 AM Ticket #183 (cannot add annotation and new Items) closed by Jari Häkkinen
wontfix: This problem is due to mixing of classes from different subversion …
8:00 AM Ticket #192 (Analysis plugins that adds data to an experiment can't commit if the ...) created by Nicklas Nordborg
The problem is that we have to update the disk usage for the …

Apr 18, 2006:

2:00 PM Ticket #191 (Mobile number field in user info?) created by Jari Häkkinen
Should we add this? Maybe more columns such as skype contact, ICQ ... …
1:57 PM Ticket #190 (Beyond last page when filter is changed) created by Jari Häkkinen
If a filter is applied after browsing a couple of pages in a list (eg …
12:27 PM Changeset [2165] by Martin Svensson
Change the export format for helptexts
11:25 AM Ticket #171 (Experimental factor for experiments) closed by Nicklas Nordborg
fixed: (In [2164]) Fixes #171: Experimental factor for experiments
11:25 AM Changeset [2164] by Nicklas Nordborg
Fixes #171: Experimental factor for experiments
8:06 AM Changeset [2163] by Nicklas Nordborg
Webclient is installed by net.sf.basedb.install.WebClient?
8:02 AM Ticket #189 (Allow export plugins to send download immediately to client) created by Nicklas Nordborg
Maybe it is possible to add a Response.getOut() which provides an …

Apr 12, 2006:

5:35 PM Changeset [2162] by Johan Enell
It reads the configuration file but it doesnt store tha values

Apr 11, 2006:

4:52 PM Changeset [2161] by Johan Enell
createClient(...web...) was removed it is needed…

Apr 10, 2006:

8:25 AM Changeset [2160] by Martin Svensson
Added installation of HelpExporter? plugin

Apr 7, 2006:

5:25 PM Changeset [2159] by Martin Svensson
Fixes #179: Created plugin for exporting help texts
5:25 PM Ticket #179 (Create plugin for exporing help texts) closed by Martin Svensson
fixed: (In [2159]) Fixes #179: Created plugin for exporting help texts
3:58 PM Changeset [2158] by Nicklas Nordborg
Fixes #187: Add a New directory button to "Select directory" dialog
3:58 PM Ticket #187 (Add a New directory button to "Select directory" dialog) closed by Nicklas Nordborg
fixed: (In [2158]) Fixes #187: Add a New directory button to "Select …
3:45 PM Changeset [2157] by Nicklas Nordborg
Fixes #188: Readd the missing "Unload" button in Plugin definitions list
3:45 PM Ticket #188 (Readd the missing "Unload" button in Plugin definitions list) closed by Nicklas Nordborg
fixed: (In [2157]) Fixes #188: Readd the missing "Unload" button in Plugin …
3:04 PM Changeset [2156] by Nicklas Nordborg
Removed TODO from item that was done.
2:56 PM Ticket #139 (Write documentation: 5d) Analysis plug-ins) closed by Nicklas Nordborg
fixed: (In [2155]) Fixes #139: Write documentation: 5d) Analysis plug-ins …
2:56 PM Changeset [2155] by Nicklas Nordborg
Fixes #139: Write documentation: 5d) Analysis plug-ins Added another …
2:34 PM Ticket #188 (Readd the missing "Unload" button in Plugin definitions list) created by Nicklas Nordborg
The "Unload" button unloads the JAR file with an external plugin …
11:35 AM Ticket #137 (Write documentation 5b) Plug-ins for importing data) closed by Nicklas Nordborg
fixed: (In [2154]) Fixes #137: Write documentation 5b) Plug-ins for importing …
11:35 AM Changeset [2154] by Nicklas Nordborg
Fixes #137: Write documentation 5b) Plug-ins for importing data Added …
10:50 AM Changeset [2153] by Nicklas Nordborg
Classloader now ignores empty Class-Path attribute in the manifest file

Apr 6, 2006:

7:30 PM Ticket #187 (Add a New directory button to "Select directory" dialog) created by Nicklas Nordborg
This dialog is used in for example the "Move to" and "Save in" …
3:05 PM Changeset [2152] by Nicklas Nordborg
Fixed export function so it supports ReporterScore?
3:00 PM Changeset [2151] by Nicklas Nordborg
Added documentation 6a) How to write plug-ins
11:05 AM Ticket #186 (The InteractivePlugin.isInContext should return a String instead of boolean) created by Nicklas Nordborg
If so, the plugin could return null as a replacement for TRUE and a …
7:51 AM Ticket #126 (Add interface for managing reporter lists) closed by Nicklas Nordborg
fixed

Apr 5, 2006:

4:08 PM Ticket #185 (Refactor the Item class and DbControl and more...) created by Nicklas Nordborg
After adding the ReporterScore? which doesn't inherit from BasicItem?
3:37 PM Changeset [2150] by Nicklas Nordborg
Added page for viewing scores for reporters in reporter list. Added …

Apr 4, 2006:

3:50 PM Changeset [2149] by Nicklas Nordborg
First version of reporter list view Updated ReporterFlatFileImporter?
11:24 AM Changeset [2148] by Nicklas Nordborg
Changed copyright notice
11:21 AM Changeset [2147] by Nicklas Nordborg
Added PathParameterType? to allow plugins to ask for a File or …

Apr 3, 2006:

4:20 PM Changeset [2146] by Jari Häkkinen
Added devevloper information regarding database schema changes.
3:54 PM Changeset [2145] by Jari Häkkinen
Added a column in the download section indicating schema change.
3:32 PM Changeset [2144] by Jari Häkkinen
Added a comment about postgresql update problems.
3:27 PM Changeset [2143] by Jari Häkkinen
Added new revision to download 2.0RC1.2142
1:14 PM Ticket #184 (Running SQL/HQL after an update to the database) closed by Nicklas Nordborg
fixed: (In [2142]) Fixes #184: Running SQL/HQL after an update to the database.
1:14 PM Changeset [2142] by Nicklas Nordborg
Fixes #184: Running SQL/HQL after an update to the database.
8:07 AM Ticket #184 (Running SQL/HQL after an update to the database) created by Nicklas Nordborg
When updating the database there must be some way to update the values …
4:55 AM Ticket #183 (cannot add annotation and new Items) created by lyu@…
Dear all, After I downloaded the latest source code “2106 Mar 23, …
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