Timeline
Jun 20, 2006:
- 3:56 PM Ticket #296 (The raw bioassays on the bioassayset view) created by
- On the bioassayset -> properties view you can see which raw bioassays …
- 3:52 PM Ticket #295 (Filter on selected bioassays) created by
- From the view BioAssaySet? -> BioAssays? you should be able to start a …
- 3:49 PM Ticket #294 (Performance testing: Plugin-in execution time) created by
- The core plug-ins are slow. Just by running plug-ins on the demo …
- 1:54 PM Changeset [2400] by
- this coomit action make further changes to these classes and jsp pages …
- 1:21 PM Changeset [2399] by
- Fixes #199: Use reporter lists in filter for bioassay sets
- 1:21 PM Ticket #199 (Use reporter lists in filter for bioassay sets) closed by
- fixed: (In [2399]) Fixes #199: Use reporter lists in filter for bioassay sets
- 11:22 AM Changeset [2398] by
- Ticket feedback procedure changed --> changes to some files.
- 10:52 AM WikiStart edited by
- Increased visibility of ticketing userid and password (diff)
- 9:53 AM WikiStart edited by
- Added login information for ticket creation privileges. (diff)
- 9:02 AM Changeset [2397] by
- References #199: Use reporter lists in filter for bioassay sets …
Jun 19, 2006:
- 5:59 PM Ticket #293 (allow queuing of uploads) created by
- 1. Allow multiple files to be chosen at once for upload. It is …
- 1:23 PM Ticket #292 ([UNK]) created by
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- 1:20 PM Ticket #291 ([UNK]) created by
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- 12:18 PM Ticket #284 (uploading file with same name as existing file gives error) closed by
- fixed: Fixed in changeset [2375]
- 11:19 AM Changeset [2396] by
- Now shows Any-to-any links for transformations
- 9:35 AM Changeset [2395] by
- Fixed compilation error
- 9:33 AM Changeset [2394] by
- Adding CEL files and CDF files show now work properly.
- 8:22 AM Changeset [2393] by
- Update to schema version 7 should now work
Jun 18, 2006:
- 6:54 AM Ticket #290 (http://vefur.simula.no:8888/refs/uploads/12/Buy-Tramadol.html) created by
- tak hochetsya na vse zabit [URL= …
- 6:53 AM Ticket #289 (http://vefur.simula.no:8888/refs/uploads/12/Buy-Fioricet.html) created by
- Nice site... Cool guestbook... [URL= …
Jun 16, 2006:
- 10:39 PM Ticket #288 (Plate name prefixes no added) created by
- When importing a plate with plate importer, there is a choice for a …
- 8:24 PM Ticket #287 (Can't edit Configuration) closed by
- fixed: Same as #283 (fixed)
- 8:21 PM Ticket #287 (Can't edit Configuration) created by
- I have a configuration created and want to change its name or …
- 4:09 PM Changeset [2392] by
- References #150: Affymetrix support Changes to RawDataType? to allow …
- 1:37 PM Changeset [2391] by
- Removed debug output
- 1:12 PM Changeset [2390] by
- Fixed shareItem link
- 11:07 AM Changeset [2389] by
- Check for SET_PERMISSION permission before adding items to a …
- 11:03 AM Ticket #286 (Add 'disabled' version of the 'item is shared' icon) created by
- On the list pages an 'item is shared' icon is displayed for items that …
- 10:46 AM Changeset [2388] by
- Added ShareItem? command to directory controller
- 9:45 AM Ticket #285 (Analysis plugins working on the same experiment may fail with a ...) closed by
- fixed: (In [2387]) Fixes #285: Analysis plugins working on the same …
- 9:45 AM Changeset [2387] by
- Fixes #285: Analysis plugins working on the same experiment may fail …
Jun 15, 2006:
- 4:58 PM Changeset [2386] by
- Viewing permissions on an item in single item view, part of #207
- 1:43 PM Changeset [2385] by
- File manager now use the new view/download functionality
- 1:23 PM Changeset [2384] by
- References #150: Affymetrix support It is now possible to link CDF …
Jun 14, 2006:
- 9:14 PM Changeset [2383] by
- Added some clarifying words about upgrades.
- 9:08 PM DownloadPage edited by
- base.thep.lu.se initiated changes. (diff)
- 9:06 PM DeveloperInformation edited by
- base.thep.lu.se initiated changes. (diff)
- 8:59 PM WikiStart edited by
- Fixed links to point at proper servers (base.thep.lu.se change) (diff)
- 2:48 PM Tickets #267,107 batch updated by
- fixed: (In [2382]) Fixes #107 and #267: Any-to-any relation and Linking of …
- 2:48 PM Changeset [2382] by
- Fixes #107 and #267: Any-to-any relation and Linking of files to items
- 2:04 PM Changeset [2381] by
- Ooops, missed this one while checking in
- 2:02 PM Ticket #248 (Postgres hangs when trying to load data from a filtered bioassayset) closed by
- fixed: (In [2380]) Fixes #248: Postgres hangs when trying to load data from a …
- 2:02 PM Changeset [2380] by
- Fixes #248: Postgres hangs when trying to load data from a filtered …
- 1:43 PM Ticket #285 (Analysis plugins working on the same experiment may fail with a ...) created by
- The problem seems to be that when generating the ID numbers for data …
- 8:56 AM Changeset [2379] by
- Better handling of SQLException which uses a non-standard chaining …
Jun 13, 2006:
- 3:57 PM Changeset [2378] by
- Added method: isRolledBack
- 2:54 PM Ticket #144 (Overhaul of BASE web site) closed by
- fixed: The trac is now the official base.thep.lu.se
- 2:53 PM WikiStart edited by
- This is now the base.thep.lu.se page. Changed old base server to … (diff)
- 11:39 AM Changeset [2377] by
- Fixes #274 cannot navigate between tabs in experiment
- 11:39 AM Ticket #274 (cannot navigate between tabs in experiment) closed by
- fixed: (In [2377]) Fixes #274 cannot navigate between tabs in experiment
- 9:52 AM Changeset [2376] by
- Correct a misspelt word in alert message
- 9:23 AM Changeset [2375] by
- Fixes the case when the the root exception (WebException?) was wrapped …
- 8:57 AM Ticket #195 (Link the "Item is shared" icon in the list view to the Share item popup) closed by
- fixed: (In [2374]) Fixes #195 Link the "Item is shared" icon in the list view …
- 8:57 AM Changeset [2374] by
- Fixes #195 Link the "Item is shared" icon in the list view to the …
- 8:00 AM Ticket #283 (cannot save changes to plugin configurations) closed by
- fixed: (In [2373]) Fixes #283: cannot save changes to plugin configurations
- 7:59 AM Changeset [2373] by
- Fixes #283: cannot save changes to plugin configurations
Jun 12, 2006:
- 10:14 PM Ticket #284 (uploading file with same name as existing file gives error) created by
- If you attempt to upload a file with the same name as a file that is …
- 10:10 PM Ticket #283 (cannot save changes to plugin configurations) created by
- When attempting to edit a plugin configuration, the "save" button does …
- 11:38 AM Changeset [2372] by
- References #277. Administrate->Plugins->Definitions page …
- 11:38 AM DownloadPage edited by
- New packaged release (revision 2371) (diff)
- 10:42 AM Changeset [2371] by
- Commit changes to Install class and common queries xml file for …
- 10:37 AM Changeset [2370] by
- Fixes #277: Administrate->Plugins->Definitions page malfunctioning
- 10:37 AM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) closed by
- fixed: (In [2370]) Fixes #277: Administrate->Plugins->Definitions page …
- 8:29 AM Ticket #280 (Shared item doesn't appear in the list, though the item is shared to ...) closed by
- invalid: Short answer: Use the menu: File -> Reload permissions Long answer: …
- 8:20 AM Changeset [2369] by
- Changed compiler error generating line.
- 8:18 AM Ticket #279 (Permissions, Read and Write,selected when opening the Share-popup ...) closed by
- invalid: Actaully it is the Read and Use permissions that are checked. This is …
- 8:01 AM Ticket #276 (Typo in alert box when attempting to "share") closed by
- fixed: (In [2368]) Fixes #276: Typo in alert box when attempting to "share"
- 8:01 AM Changeset [2368] by
- Fixes #276: Typo in alert box when attempting to "share"
Jun 9, 2006:
- 11:36 PM Ticket #282 (http://1stbest.bitacoras.com/buy-ambien.html) created by
- greats from me.... [URL= http://1stbest.bitacoras.com/buy-ambien.html …
- 11:32 PM Ticket #281 (http://1stbest.bitacoras.com/buy-diazepam.html) created by
- Hi, everybody :) [URL= http://1stbest.bitacoras.com/buy-diazepam.html …
- 5:16 PM Changeset [2367] by
- reading output from plugin is halfdone
- 5:16 PM Changeset [2366] by
- added static method getFile(DbControl?, Directory, filename)
- 3:24 PM Changeset [2365] by
- resolved return value for isincontext method
- 11:35 AM Changeset [2364] by
- nomsg
- 11:35 AM Changeset [2363] by
- nomsg
- 11:11 AM Changeset [2362] by
- Removed System.out.print used for debugging
- 11:06 AM Ticket #280 (Shared item doesn't appear in the list, though the item is shared to ...) created by
- Logged in as Root(Administrator) eg. An item is shared to 'Everyone' …
- 10:47 AM Changeset [2361] by
- nomsg
- 10:31 AM Changeset [2360] by
- nomsg
- 10:30 AM Changeset [2359] by
- nomsg
Jun 8, 2006:
- 5:22 PM Changeset [2358] by
- Commitiing new changes to current revision 2357. …
- 4:09 PM Changeset [2357] by
- Commitiing new changes current revision 2356. After a new check out
- 3:58 PM Ticket #279 (Permissions, Read and Write,selected when opening the Share-popup ...) created by
- When opening the Share-popup, to set access permissions for other …
- 12:09 PM Changeset [2356] by
- the jsp folder for the anotationtype categories
- 9:02 AM Ticket #190 (Beyond last page when filter is changed) closed by
- fixed: (In [2355]) Fixes #190 Beyond last page when filter is changed
- 9:02 AM Changeset [2355] by
- Fixes #190 Beyond last page when filter is changed
Jun 7, 2006:
- 10:53 AM Ticket #157 (Display and link to associated items from list page) closed by
- fixed: (In [2354]) Fixes #157 Display and link to associated items from list page
- 10:53 AM Changeset [2354] by
- Fixes #157 Display and link to associated items from list page
Jun 6, 2006:
- 9:50 PM Ticket #278 (Trying to create a new plate.) created by
- I'd previously created a dummy plate geometry and plate type, and upon …
- 5:54 PM Ticket #277 (Administrate->Plugins->Definitions page malfunctioning) created by
- When going to the Plugins Definitions page, only 7 results are …
- 5:41 PM Ticket #276 (Typo in alert box when attempting to "share") created by
- When viewing a list (samples, extracts, etc) I click on "Share" …
Jun 2, 2006:
- 12:20 PM Changeset [2353] by
- nomsg
- 8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) closed by
- duplicate
- 8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) reopened by
- 8:02 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) closed by
- worksforme
- 8:01 AM Ticket #275 (Property-tab doesn't work when viewing an experiment) created by
- When I view an experiment, then go to bioassay sets by clicking the …
Jun 1, 2006:
- 4:07 PM Changeset [2352] by
- First version of specification for Any-to-any. References #107.
- 2:09 PM DeveloperInformation edited by
- Changed plugin example package link to point to autogenerated location. (diff)
- 1:59 PM Changeset [2351] by
- Reverting link change.
- 11:13 AM Changeset [2350] by
- Install filter formulas for all channels: All intensities > 0
- 11:05 AM Changeset [2349] by
- Updated link to example plug-ins.
- 11:01 AM Ticket #177 (Store title and description of plugin parameters, not just the name) closed by
- fixed: (In [2348]) Fixes #177: Store title and description of plugin …
- 11:01 AM Changeset [2348] by
- Fixes #177: Store title and description of plugin parameters, not just …
- 10:12 AM DeveloperInformation edited by
- Updated link to plug-in examples. (diff)
- 9:28 AM Changeset [2347] by
- Skips spots with coordinates falling outside the image instead of …
- 8:35 AM Changeset [2346] by
- Fixed compilation bug due to core interface changes.
May 31, 2006:
- 6:39 PM Changeset [2345] by
- Merging trunk changes r2125:2342 into branch dominic_annotations
- 6:00 PM Ticket #274 (cannot navigate between tabs in experiment) created by
- When selecting an experiment, there are 2 tabs available: "Properties" …
- 1:41 PM Changeset [2344] by
- Updated UML doc for changes in ticket #206.
- 1:17 PM Ticket #206 (Display and filter on permisssion in lists) closed by
- fixed: (In [2343]) Fixes #206: Display and filter on permisssion in lists …
- 1:17 PM Changeset [2343] by
- Fixes #206: Display and filter on permisssion in lists NOTE! This …
- 12:47 AM Changeset [2342] by
- Compilation of Affymetrix discussions.
May 30, 2006:
- 8:07 PM Changeset [2341] by
- Fixed classpath for installation program
- 2:22 PM Ticket #175 (Move core plugins to a standalone compilation unit) closed by
- fixed: (In [2340]) Fixes #175: Move core plugins to a standalone compilation unit
- 2:22 PM Changeset [2340] by
- Fixes #175: Move core plugins to a standalone compilation unit
- 12:42 PM Changeset [2339] by
- nomsg
- 12:32 PM Changeset [2338] by
- This class was modified to include testing annotation type categories …
- 12:27 PM Changeset [2337] by
- This class is the core class for annotation type categories
- 12:10 PM Ticket #273 (Make rest of web gui user-friendly) closed by
- duplicate
- 12:09 PM Ticket #273 (Make rest of web gui user-friendly) created by
- This ticket covers item not covered by tickets #268, #269, #270 and …
- 12:06 PM Ticket #272 (Make rest of web gui user-friendly) created by
- This ticket covers item not covered by tickets #268, #269, #270 and …
- 12:04 PM Ticket #271 (Make admin web gui more user-friendly) created by
- This includes reviewing what information and functionality is …
- 12:04 PM Ticket #270 (Make array lims web gui more user friendly) created by
- This includes reviewing what information and functionality is …
- 12:03 PM Ticket #269 (Make hybridizations/experiments web gui more user friendly) created by
- This includes reviewing what information and functionality is …
- 12:01 PM Ticket #268 (Make biomaterials web gui more user-friendly) created by
- This includes reviewing what information and functionality is …
- 11:49 AM Ticket #267 (Linking of files to items) created by
- Some features require that files can be linked to other items. For …
- 11:10 AM Changeset [2336] by
- This class is the core class for annotation type categories
- 9:02 AM Ticket #266 (Strange mouse-over message in some places) created by
- An example is when changing roles for an account the mouse-over …
- 8:55 AM Ticket #265 (Information display when viewing details on roles needs a change) created by
- Choosing Administrate->Roles->Power User will display all accounts …
May 29, 2006:
- 3:21 PM Milestone BASE 2.0 RC2 completed
- This milestone includes * Affymetrix support (delayed, will appear …
- 3:17 PM DownloadPage edited by
- RC2 released, new download link. (diff)
- 3:13 PM Changeset [2335] by
- News: RC2 released.
- 2:21 PM Changeset [2334] by
- Releasing RC2
- 2:18 PM Changeset [2333] by
- Preparing for RC2
- 2:14 PM Changeset [2332] by
- Correct a misspelt menu
- 1:42 PM Ticket #149 (Plugin bridge that allows BASE1 plug-ins to be run in BASE2) closed by
- duplicate
- 11:25 AM Ticket #264 (Base1 plug-in executer enhancements) created by
- * Export annotations For each BioAssay? the annotation from the …
- 11:12 AM Ticket #204 (Base1 plug-in runner) closed by
- fixed
- 9:27 AM Changeset [2331] by
- 9:27 AM Changeset [2330] by
- pluginexecuter create a serial basefile no annotations
- 8:58 AM Changeset [2329] by
- Bumped to RC2. Changed contributor list.
- 8:55 AM Changeset [2328] by
- Bumped RC1 to RC2. Fixed minor issues.
- 8:29 AM Ticket #261 (hardware and software sharing problem) closed by
- fixed: The problem couldn't be recreated in build #2327
- 8:27 AM WikiStart edited by
- (diff)
May 24, 2006:
- 2:55 PM Changeset [2327] by
- Added documentation for the plot servlet and plot utilities
- 12:20 PM Changeset [2326] by
- Help text for plugin sections is now displayed in the web client.
- 11:51 AM Changeset [2325] by
- Added and cleaned up some JavaDoc?
- 11:51 AM Ticket #84 (getRequestInformation returns TODO in description fields for many plugins) closed by
- fixed: (In [2324]) Fixes #84: getRequestInformation returns TODO in …
- 11:50 AM Changeset [2324] by
- Fixes #84: getRequestInformation returns TODO in description fields …
- 11:43 AM DeveloperInformation edited by
- (diff)
- 11:39 AM WikiStart edited by
- Added todo link. Clarified text on plug-ins. (diff)
- 11:11 AM WikiStart edited by
- Moved mailing list to another page. (diff)
- 11:10 AM MailingLists created by
- 11:07 AM Changeset [2323] by
- Added news item about the new BASE web site. Removed obsolete …
- 10:53 AM WikiStart edited by
- Added demo server information. (diff)
- 10:26 AM WikiStart edited by
- Spelling error fixed (diff)
- 10:26 AM Changeset [2322] by
- Fixed some Javadoc items
- 10:25 AM Changeset [2321] by
- Log SQL statements
- 9:41 AM Changeset [2320] by
- Now finds the parent <tbl:table> tag.
- 9:39 AM Changeset [2319] by
- Validate that no expressions are null
- 9:22 AM Changeset [2318] by
- Set row and column coordinate of a feature
- 9:03 AM Ticket #209 (Add JepMapper to FlatFileParser) closed by
- fixed: (In [2317]) Fixes #209: Add JepMapper? to FlatFileParser?
- 9:03 AM Changeset [2317] by
- Fixes #209: Add JepMapper? to FlatFileParser?
- 2:35 AM Changeset [2316] by
- Moved download information to the Trac wiki.
- 2:29 AM DownloadPage edited by
- (diff)
- 2:20 AM DownloadPage edited by
- First finalized version. (diff)
- 2:04 AM DownloadPage edited by
- (diff)
- 1:28 AM DownloadPage edited by
- (diff)
- 12:53 AM DownloadPage created by
- 12:49 AM WikiStart edited by
- (diff)
May 23, 2006:
- 3:01 PM Ticket #263 (Update to latest versions of 3rd-party software) created by
- Well, maybe we don't need to update everything, but we definitely have …
- 2:50 PM Changeset [2315] by
- Now contains correct jar file information and version numbers
- 2:31 PM WikiStart edited by
- (diff)
- 1:42 PM Ticket #262 (Overview of an experiment) created by
- Create a plugin or something that generates an overview of all items …
- 1:20 PM DeveloperInformation edited by
- (diff)
- 1:18 PM Ticket #260 (Remove AffyFeatures table) closed by
- fixed: (In [2314]) Fixes #260: Remove AffyFeatures? table Also removed a lot …
- 1:18 PM Changeset [2314] by
- Fixes #260: Remove AffyFeatures? table Also removed a lot of unused …
- 1:10 PM WikiStart edited by
- (diff)
- 1:09 PM DeveloperInformation created by
- 12:09 PM WikiStart edited by
- More fixes and additions. (diff)
- 11:59 AM WikiStart edited by
- (diff)
- 11:55 AM WikiStart edited by
- (diff)
- 11:52 AM WikiStart edited by
- Added mailing list information (diff)
- 11:43 AM WikiStart edited by
- (diff)
- 11:40 AM Ticket #261 (hardware and software sharing problem) created by
- Sharing of the software and hardware items among users and groups does …
- 11:23 AM Changeset [2313] by
- Added possibility to create external links for extended properties
- 11:08 AM Changeset [2312] by
- Removed unused import
- 10:39 AM Ticket #260 (Remove AffyFeatures table) created by
- This should never be used anyway. It would be too much data.
- 8:20 AM Changeset [2311] by
- Renamed misspelled file name
May 22, 2006:
- 3:00 PM Changeset [2310] by
- Fixes #256: Filter updates to the Job.ProgressReporterImpl?
- 3:00 PM Ticket #256 (Filter updates to the Job.ProgressReporterImpl) closed by
- fixed: (In [2310]) Fixes #256: Filter updates to the Job.ProgressReporterImpl?
- 2:37 PM Changeset [2309] by
- Added "tools" column to bioassayset list. Links to plot tool, run …
- 1:47 PM Changeset [2308] by
- Hide plugin configuration when there is none to select
- 12:43 PM Changeset [2307] by
- Plot function generates error image with stack trace
- 12:34 PM Changeset [2306] by
- Fixed subversion proterties.
- 12:16 PM Changeset [2305] by
- Removed stray CRLF characters, added missing svn properties.
- 11:37 AM Changeset [2304] by
- Changed copyright statement.
- 11:21 AM Changeset [2303] by
- USE permission is now enough to create bioassay sets
- 10:59 AM Ticket #259 (A job's progress doesn't get upadated when a job is executing in ...) created by
- Probably due to caching of the job information by the second-level cache.
- 10:27 AM Changeset [2302] by
- Fixed Javadoc warnings
- 9:30 AM Ticket #216 (Show deleted directories in file manager) closed by
- fixed: (In [2301]) Fixes #216: Show deleted directories in file manager
- 9:30 AM Changeset [2301] by
- Fixes #216: Show deleted directories in file manager
- 9:03 AM Ticket #211 (Show list of child bioassay sets/transformations when viewing a ...) closed by
- fixed
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