Timeline
Sep 22, 2006:
- 11:08 PM WikiStart edited by
- Minor sponsor fixes. (diff)
- 11:06 PM WikiStart edited by
- Added sponsor logos. (diff)
- 10:50 PM WikiStart edited by
- Removed footer link to title index. (diff)
- 1:45 PM Changeset [2659] by
- Fixes #373: Wrong character for less then
- 1:45 PM Ticket #373 (Wrong character for less then) closed by
- fixed: (In [2659]) Fixes #373: Wrong character for less then
- 1:37 PM Changeset [2658] by
- Refences #169: Use formulas for creating extra values Added admin …
- 1:34 PM Changeset [2657] by
- References #220 1 Put the handle of plugin permissions into Keyring. …
- 12:49 PM Changeset [2656] by
- Tab can automatically adjust the height when popup window is beeing …
- 12:47 PM Ticket #373 (Wrong character for less then) created by
- In the expression builder view the greater then or equal(>=) is shown …
- 9:51 AM Ticket #301 (Better GUI for defining file formats) closed by
- fixed: (In [2655]) Fixes #301: Better GUI for defining file formats
- 9:51 AM Changeset [2655] by
- Fixes #301: Better GUI for defining file formats
Sep 21, 2006:
- 2:29 PM Changeset [2654] by
- Log stacktrace in case of an exception
- 12:49 PM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) created by
- CEL files contains information about the ArrayDesign? used to generated …
- 12:15 PM Ticket #371 (Add a field Publication Title to the Publication Page in Experiment Section) created by
- 12:13 PM Ticket #370 (Hyperlink to Pubmed if Pubmed id submitted from Publication Page in ...) created by
- $pubmed_id should be an integer. linking to EBI's Citexplore using …
- 10:41 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) created by
- When setting an 'annotationType' as ExperimentalFactor? in a given …
- 9:25 AM Changeset [2653] by
- Change minor version to 1
Sep 20, 2006:
- 10:56 AM Ticket #368 (Migration should migrate plugin settings for BASE 1 plugins) created by
- The settings should be stored as different configurations for the …
Sep 19, 2006:
- 4:01 PM Changeset [2652] by
- References #220. Fixed nullpointerexception when calling invoke() in …
- 2:46 PM Changeset [2651] by
- The agent should not stop BASE. It may run inside another application.
- 2:32 PM Changeset [2650] by
- Fixes #363: Updating from RC1 throws NullPointerException?
- 2:32 PM Ticket #363 (Updating from RC1 throws NullPointerException) closed by
- fixed: (In [2650]) Fixes #363: Updating from RC1 throws NullPointerException?
- 2:27 PM Changeset [2649] by
- Now uses ant task instead of external program to get the subversion …
- 1:30 PM Changeset [2648] by
- References #351: External job server usage Most functionality is now …
- 8:07 AM Ticket #367 (Error on "About" update) closed by
- fixed: (In [2647]) Fixes #367: Error on "About" update
- 8:07 AM Changeset [2647] by
- Fixes #367: Error on "About" update
- 8:01 AM DownloadPage edited by
- Added warning about the using the trunk (diff)
Sep 18, 2006:
- 7:33 PM Ticket #367 (Error on "About" update) created by
- Built from subversion checkout, up to changeset 2622. Build and …
- 2:41 PM Changeset [2646] by
- References #220 Using the plugin permissions when a plugin is executed.
- 12:41 PM Changeset [2645] by
- Removing branch that has been merged into trunk.
- 11:19 AM Changeset [2644] by
- Removing a never used branch.
Sep 15, 2006:
- 4:45 PM Ticket #366 (Batch upload using zip-files) created by
- A way to provide batch upload is to create an upload plug-in that …
- 4:43 PM Ticket #365 (Use java web start to launch plug-ins) created by
- In order to support more powerful visualization plug-ins we should …
- 4:11 PM Ticket #364 (Support for automatic install of non-core plugins) created by
- It would be nice to get an automatic install/update of non-core …
- 4:08 PM Changeset [2643] by
- References #351: External job server usage In-process job executor is …
- 3:57 PM Changeset [2642] by
- Refs #363. Added information about the RC1 to 2.0 updating problem.
- 3:47 PM Ticket #363 (Updating from RC1 throws NullPointerException) created by
- […] The problem is that there is no SchemaVersion? information in …
Sep 14, 2006:
- 12:17 PM Changeset [2641] by
- References #351: External job server usage The core of the job agent …
Sep 13, 2006:
- 1:51 PM Changeset [2640] by
- References #220 Improved the handling of permissions in PluginDefinitions?
- 9:47 AM Changeset [2639] by
- target 'web' now depends on 'main'.
- 9:43 AM Changeset [2638] by
- Added copyright and license header
- 9:05 AM Changeset [2637] by
- Deprecated net.sf.basedb.clients.web.util.Values. Use …
Sep 12, 2006:
- 4:21 PM Changeset [2636] by
- Refereces #220. Separate permissions for plugindefinitions. The use of …
- 2:48 PM Changeset [2635] by
- Semi-automatic detection if Hibernate mappings needs to be generated or not
- 2:24 PM Changeset [2634] by
- References #351: External job server usage Communincation with the …
- 8:21 AM Ticket #362 (Stack trace is output to catalina.out when it shouldn't) closed by
- wontfix: If you wish to do this you have to configure Tomcat differently. The …
Sep 9, 2006:
- 11:09 PM Ticket #362 (Stack trace is output to catalina.out when it shouldn't) created by
- The below exception is thrown when ones tries to run an analysis …
- 3:48 PM Changeset [2633] by
- Added link to http://base.thep.lu.se
- 2:07 AM Ticket #361 (Export of bioassaysets) created by
- A plug-in to export bioassay data is needed as reported at the …
Sep 8, 2006:
- 4:06 PM Changeset [2632] by
- References #351: External job server usage Started to implement the …
- 12:17 PM Changeset [2631] by
- References #351: External job server usage Update web pages for …
- 9:27 AM Ticket #360 (Make subsections on view pages hideable) created by
- Some view pages for items have lots of information on them and they …
- 9:21 AM Changeset [2630] by
- Fixed compilatio errors in test program after change to JobAgent?
- 9:17 AM Changeset [2629] by
- References #351: External job server usage Added web pages for …
Sep 7, 2006:
- 2:23 PM Changeset [2628] by
- Added svndigest:ignore property on test data files.
- 11:20 AM Changeset [2627] by
- References #351: External job server usage Added data layer class, …
- 11:07 AM Changeset [2626] by
- Updated UML-diagram with entity value for plugin permissions.
- 9:36 AM Ticket #359 (Sorting on mulitple columns in web tables) created by
- Sometimes you want to sort the results using multiple columns. For …
Sep 6, 2006:
- 4:09 PM Changeset [2625] by
- Added JobAgent? to UML diagram
Sep 5, 2006:
- 5:02 PM Changeset [2624] by
- Updated the documentation with information about plugin permissions.
- 1:04 PM DeveloperInformation edited by
- Changed link for development plan to roadmap (diff)
- 1:01 PM Changeset [2623] by
- Removed links to the very old development status pages. Fixed redirect …
- 12:01 PM Changeset [2622] by
- References #332: Fix bugs in migration program This should fix most …
- 11:20 AM Ticket #358 (Better info from Migration tool) created by
- The output of the migration tool is somewhat sporadic and not very …
Sep 1, 2006:
- 4:49 PM Changeset [2621] by
- Merge file added
- 4:31 PM Tickets #355,356,357 batch updated by
- fixed: (In [2620]) fixes #355 #356 #357
- 4:31 PM Changeset [2620] by
- fixes #355 #356 #357
- 4:24 PM Ticket #357 (Importing datamatrix) created by
- The Base1PluginExecuter cant import a matrix base file
- 4:23 PM Ticket #356 (Nullpointer in Base1PluginExecuter) created by
- When exporting a hidden string the Base1PluginExecuter is throwing a …
- 4:21 PM Ticket #355 (Log2ratio is calculated wrong in base1executer) created by
- The log2ratio is wrong when exporting data in Base1PluginExecuter
- 3:44 PM Changeset [2619] by
- Removed RC2.
Aug 31, 2006:
- 2:32 PM Milestone BASE 2.0 completed
- This milestone includes * Affymetrix support (delayed from RC2, will …
- 2:32 PM WikiStart edited by
- 2.0 released. (diff)
- 2:23 PM DownloadPage edited by
- (diff)
- 2:21 PM DownloadPage edited by
- (diff)
- 1:38 PM Changeset [2618] by
- Create bugfix branch for 2.0
- 1:37 PM Changeset [2617] by
- Releasing 2.0
- 1:23 PM Changeset [2616] by
- Oracle JDBC driver is not needed
- 1:17 PM Changeset [2615] by
- Added info about debug parameter for the migration.
- 1:13 PM Changeset [2614] by
- References #332: Base 1 ID lookup is unstable Should fix the original …
- 1:10 PM Changeset [2613] by
- Fixes incorrect plate mappings installed by previous releases.
Aug 30, 2006:
- 10:01 PM Changeset [2612] by
- Fixed batch files for running test programs in windows.
- 4:35 PM Ticket #264 (Base1 plug-in executer enhancements) closed by
- fixed
- 4:34 PM Changeset [2611] by
- Fixex #264
- 4:23 PM Changeset [2610] by
- Filled up some javaDocs
- 4:06 PM Changeset [2609] by
- Added people to credits list.
- 1:48 PM Changeset [2608] by
- Added information about the broken migration tool.
- 10:23 AM Changeset [2607] by
- Fixed NullPointerException? in configure() method
- 8:03 AM Changeset [2606] by
- Removed non-existing email address from plugins.
- 7:57 AM Changeset [2605] by
- Changed text about Type.ITEM to not talk about lists any more.
Aug 29, 2006:
- 3:59 PM Changeset [2604] by
- Removed category duplication
- 2:59 PM Changeset [2603] by
- added some html.javaScriptEncode lines
- 1:41 PM Ticket #354 (Copy transformation) created by
- A copy action for transformations. Create a new transformation from …
- 12:12 PM Changeset [2602] by
- Removed category duplication
- 11:32 AM Changeset [2601] by
- Updated Javadoc and added missing imports for javadoc ref.
- 10:00 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) created by
- As a part of our effort in an EU project http://www.eu-acgt.org we …
- 9:58 AM Ticket #352 (Connect parts of the TM4 software suite to BASE) created by
- We are going to connect parts of the TM4 suite (http://www.tm4.org) to …
Aug 28, 2006:
- 3:26 PM Ticket #351 (External job server usage) created by
- Add possibility to run jobs in other JVMs that the server.
- 3:05 PM Ticket #308 (Firefox unresponsive script warning when uploading files) closed by
- worksforme
- 1:56 PM Changeset [2600] by
- Updated About and exception dialog with jdbc driver version, java …
- 1:06 PM Ticket #350 (Switch to another user functionality) created by
- For users with the "Act as another user" permission it should be …
- 1:04 PM Changeset [2599] by
- Delete, Restore, Share and Export buttons now works in popup windows …
- 12:58 PM Ticket #349 (Callback for events to plugins) created by
- Make it possible to catch onChange event for plugin parameters and …
- 11:42 AM Ticket #348 (Take ownership of items) created by
- Implement interface for taking the ownership of an item, given that …
- 11:40 AM Ticket #347 (Give administrators access to other users trashcans) created by
- 11:39 AM Ticket #346 (If an item is used, get information about the items that are using it) created by
- A used item can't be deleted and it is annoying to not know what is …
- 11:37 AM Ticket #345 (List all items owned by a user) created by
- 11:18 AM Ticket #344 (Display extra values in data tables and other places) created by
- In the current implementation it is not possible to display extra …
- 11:15 AM Ticket #343 (Plot tool should be able to use other annotations than bioassay) created by
- In the current implementation you can only annotate the plots with the …
- 11:13 AM Ticket #342 (Plot tool should be able to use extra values) created by
- The current implementation cannot plot extra values.
- 10:57 AM Ticket #341 (Raw data type conversion plugin) created by
- Develop one or more plugins that can convert raw data of one type to …
- 10:55 AM Ticket #340 (Experiment validation tool) created by
- The core is very loose when it comes to checking the structure of …
- 10:50 AM Ticket #339 (Protocol parameters) created by
- Make it possible to specify parameters for a protocol. Then, when that …
- 10:49 AM Ticket #338 (Tab2Mage import plugin) created by
- Create a plugin that can import Tab2Mage files.
- 10:48 AM Ticket #337 (Tab2Mage export plugin) created by
- Create a plugin that can export an experiment in Tab2Mage format
- 10:47 AM Ticket #336 (Install common file formats with main installation) created by
- Plugin configurations for some common file formats could probably be …
- 10:46 AM Ticket #335 (Plugins for importing/exporting plugin configurations) created by
- Configuring a plugin is a tedious task that sometimes requires …
- 10:44 AM Ticket #334 (Project default items) created by
- Make is possible to specify default items (protocols, scanner, …
- 10:42 AM Ticket #333 (Administrator documentation) created by
- Write documentation for the Base 2 server administrator. Base 2 has a …
- 10:37 AM Ticket #300 (Fields in Properties display mis-aligned) closed by
- fixed: Has probably been fixed by one of the style sheet changes some time ago.
- 9:09 AM Ticket #332 (Fix bugs in migration program) created by
- The migration tool is not stable if it encounters a Base 1 …
- 9:04 AM Ticket #331 (Remember the last used item when creating new items) closed by
- fixed: (In [2598]) Fixes #331: Remember the last used item when creating new items
- 9:04 AM Changeset [2598] by
- Fixes #331: Remember the last used item when creating new items
Aug 25, 2006:
- 4:07 PM Changeset [2597] by
- References #331: Remember the last used item when creating new items …
- 1:15 PM Changeset [2596] by
- References #331: Remember the last used item when creating new items …
- 12:45 PM Changeset [2595] by
Aug 24, 2006:
- 4:33 PM Changeset [2594] by
- Correct column names in plot types table, chapter 6, §7
- 4:24 PM Changeset [2593] by
- Added a missing configuration value for the Raw data importer in the …
- 3:47 PM Changeset [2592] by
- Made toolbar visible in popupwindows.
- 3:42 PM Changeset [2591] by
- :Merged trunk changes r2577:2590 into dominic_annotations
- 2:04 PM Changeset [2590] by
- Create hybridzations from multiple labeled extracts
- 1:01 PM Changeset [2589] by
- Fixed incorrect link when write permission is missing.
- 12:54 PM Ticket #330 (Make it possible to inherit annotations for new items) closed by
- fixed: (In [2588]) Fixes #330: Make it possible to inherit annotations for …
- 12:54 PM Changeset [2588] by
- Fixes #330: Make it possible to inherit annotations for new items
- 12:53 PM Changeset [2587] by
- Plates now save the annotations
- 12:52 PM Changeset [2586] by
- Get all annotatable parents
- 10:47 AM Changeset [2585] by
- the category column removed
- 9:58 AM Changeset [2584] by
- References #330: Make it possible to inherit annotations for new items …
- 9:20 AM Changeset [2583] by
- Updated documentation about where to find test data
- 9:06 AM Changeset [2582] by
- 8:49 AM Changeset [2581] by
- Replaced fixed array with map. Use printStackTrace() method to always …
- 7:57 AM Changeset [2580] by
- Changed yellow icon background to grey
Aug 23, 2006:
- 4:10 PM DeveloperInformation edited by
- Added test data repo. (diff)
- 3:27 PM Ticket #329 (Auto-focus on input field when selecting annotation or plugin parameter) closed by
- fixed: (In [2579]) Fixes #329: Auto-focus on input field when selecting …
- 3:27 PM Changeset [2579] by
- Fixes #329: Auto-focus on input field when selecting annotation or …
- 2:13 PM Ticket #331 (Remember the last used item when creating new items) created by
- For example, when you create a new Raw bioassay you may select "Scan", …
- 1:57 PM Ticket #330 (Make it possible to inherit annotations for new items) created by
- The current implemenation requires that the item is saved before it …
- 1:32 PM Ticket #329 (Auto-focus on input field when selecting annotation or plugin parameter) created by
- When you click on a plugin parameter or annotation in the left list an …
- 12:49 PM Changeset [2578] by
- :Fixed compilation errors after merge
- 12:34 PM Changeset [2577] by
- :Merged trunk changes r2343:2576 into dominic_annotations
- 10:51 AM Changeset [2576] by
- Test formulas before experiments since formulas are used in the …
- 10:36 AM Changeset [2575] by
- Copy function for plugin configurations now copy the parameters also.
- 8:58 AM Changeset [2574] by
- Don't show "Configure plugin" action if the logged in user doesn't …
- 8:54 AM Changeset [2573] by
- Fixes #328: Enable clicks on the enumeration option when annotating …
- 8:54 AM Ticket #328 (Enable clicks on the enumeration option when annotating items) closed by
- fixed: (In [2573]) Fixes #328: Enable clicks on the enumeration option when …
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