Timeline



Oct 26, 2006:

12:05 PM Changeset [2811] by Nicklas Nordborg
Clear hidden 'exclude' filter that was set by popups
12:03 PM Changeset [2810] by Jari Häkkinen
Improving getting started doc.
10:59 AM Changeset [2809] by Nicklas Nordborg
Preload features using a stateless session to decrease memory usage.
10:07 AM Milestone BASE 2.0.3 completed
Issues to resolve for the next minor release.
10:05 AM Changeset [2808] by Jari Häkkinen
Removed obsolete branch 2.0.2.
10:04 AM DownloadPage edited by Jari Häkkinen
2.0.3 released. (diff)
9:38 AM Changeset [2807] by Jari Häkkinen
Tagging version 2.0.3
9:27 AM Changeset [2806] by Jari Häkkinen
Bumped version number to 2.0.3

Oct 25, 2006:

10:27 PM Ticket #413 (Add support for Oracle) created by Nicklas Nordborg
The current implementation doesn't work with Oracle databases for a …
4:07 PM Ticket #381 (User with administrator rights cannot share items (files) to group Everyone) closed by Nicklas Nordborg
worksforme
3:45 PM Ticket #407 (Lowess and Median ratio normalizations throws exceptions) closed by Johan Enell
fixed: (In [2805]) fixes #407
3:45 PM Changeset [2805] by Johan Enell
fixes #407
2:54 PM Changeset [2804] by Nicklas Nordborg
Fixed problem with databases (ie. Postgres) that throws exceptions …
1:09 PM Ticket #412 (Fix build.xml to make it more developer-friendly) created by Nicklas Nordborg
Currently there are issues with the location and naming of …
1:02 PM Ticket #411 (Extending compressed file support and storage) created by Jari Häkkinen
It would be nice if BASE core support would include storage of …
11:56 AM Changeset [2803] by Nicklas Nordborg
Changed decscription for default error handling to make it easier to …
11:18 AM Changeset [2802] by Nicklas Nordborg
Made it possible to select the requested permissions for a plugin
1:12 AM Changeset [2801] by Jari Häkkinen
Improving getting started doc.

Oct 24, 2006:

4:11 PM Changeset [2800] by Jari Häkkinen
Spell checked and renamed file.
4:03 PM Changeset [2799] by Jari Häkkinen
Added info.
2:34 PM Changeset [2798] by Jari Häkkinen
Updated information about affymetrix in BASE.
2:13 PM Changeset [2797] by Nicklas Nordborg
Fixed display of annotation title if the value is null
2:02 PM Changeset [2796] by Nicklas Nordborg
Fixed reporter and position index problem when moving to next …
12:15 PM Ticket #410 (The inner class Base1PluginExecutor.PosRep should implement the ...) created by Nicklas Nordborg
Using a PosMap? as a key in a hashmap doesn't work unless the both …
12:08 PM Ticket #409 (Possible NullPointerException in Base1PluginExecutor) created by Nicklas Nordborg
The following code throws NullPointerException? if 'f' is null. […]
11:56 AM Changeset [2795] by Nicklas Nordborg
Added 'final' keyword to static constants
11:55 AM Changeset [2794] by Nicklas Nordborg
Fixed invalid comparison to Float.NaN
11:50 AM Changeset [2793] by Nicklas Nordborg
Fixed possible null pointer exception
11:47 AM Changeset [2792] by Nicklas Nordborg
Fixed possible null pointer exception
11:42 AM Changeset [2791] by Nicklas Nordborg
Fixed possible null pointer exception
11:38 AM Changeset [2790] by Nicklas Nordborg
Fixed division and error message
11:36 AM Changeset [2789] by Nicklas Nordborg
Fixed invalid comparison to Float.NaN
11:33 AM Changeset [2788] by Nicklas Nordborg
Fixed possible null pointer exception
11:32 AM Changeset [2787] by Nicklas Nordborg
Added 'final' keyword to static constants
11:26 AM Changeset [2786] by Nicklas Nordborg
Added 'final' keyword to static constants
11:12 AM Changeset [2785] by Nicklas Nordborg
Fixed possible null pointer exception
11:09 AM Ticket #406 (Storing extended properties like information as annotations?) closed by Nicklas Nordborg
wontfix
11:00 AM Changeset [2784] by Nicklas Nordborg
Fixed possible null pointer exception.
10:52 AM Changeset [2783] by Nicklas Nordborg
Check for quota membership by quota group is now correct.
10:47 AM Changeset [2782] by Nicklas Nordborg
Keep the trimmed value
10:46 AM Changeset [2781] by Nicklas Nordborg
Fixed possible null pointer exception.
10:43 AM Changeset [2780] by Nicklas Nordborg
Removed unneeded call to SessionControl?.getPluginPermissions()
9:35 AM Changeset [2779] by Jari Häkkinen
Addresses #406. Removed references to annotations system since it …
8:55 AM Changeset [2778] by Nicklas Nordborg
Fixes #401: Filter plugin - failed to correctly apply filter on M …
8:51 AM Ticket #401 (Filter plugin - failed to correctly apply filter on M values) closed by Nicklas Nordborg
fixed: (In [2777]) Fixes #401: Filter plugin - failed to correctly apply …
8:51 AM Changeset [2777] by Nicklas Nordborg
Fixes #401: Filter plugin - failed to correctly apply filter on M …
8:45 AM Changeset [2776] by Nicklas Nordborg
Fixed some problems with the permission filter not always working due …
8:26 AM Changeset [2775] by Nicklas Nordborg
Allow to unshare to Group.EVERYONE even if user doesn't have …
8:19 AM Changeset [2774] by Nicklas Nordborg
Fixed incorrect index causing javascript error when selecting a …

Oct 23, 2006:

5:24 PM Changeset [2773] by Jari Häkkinen
Reformatted new revision section.
5:11 PM Changeset [2772] by Jari Häkkinen
Added developer information on how to run a server agains a WC.
4:49 PM Changeset [2771] by Jari Häkkinen
Added target installprg and changed other targets accordingly. …
2:55 PM Changeset [2770] by Nicklas Nordborg
Fixed incorrect filter when loading users.
2:42 PM Changeset [2769] by Nicklas Nordborg
Minor changes to instructions and fixed some example plot images.
2:39 PM Changeset [2768] by Nicklas Nordborg
Fixed javascript bug when array design isn't in a list.
2:00 PM Changeset [2767] by Nicklas Nordborg
Impersonation shouldn't check permissions on client.
1:25 PM Changeset [2766] by Nicklas Nordborg
Double click to move item types between lists
12:56 PM Changeset [2765] by Nicklas Nordborg
Disable warning message since it is incorrect for numeric form names.
12:52 PM Changeset [2764] by Jari Häkkinen
Removed obsolete comment relating to RC releases of BASE 2.0.
12:18 PM Changeset [2763] by Jari Häkkinen
Removed obsolete branch. Superseded by source:/branches/2.0.2
12:04 PM Changeset [2762] by Nicklas Nordborg
Do not set the focus for disabled elements (causes JavaScript? error in IE).
11:57 AM Changeset [2761] by Nicklas Nordborg
Removed call to non-existing JavaScript? function.
11:51 AM Changeset [2760] by Nicklas Nordborg
Fixed IE bugs in the "Test with file" feature.
10:00 AM Ticket #335 (Plugins for importing/exporting plugin configurations) closed by Martin Svensson
fixed
9:56 AM Changeset [2759] by Martin Svensson
Fixes #335 Plugins for importing/exporting plugin configurations
9:24 AM Ticket #408 (Implement FTP server) created by Nicklas Nordborg
Batch uploading of files can be much easier with a FTP server than …
9:15 AM Ticket #407 (Lowess and Median ratio normalizations throws exceptions) created by Nicklas Nordborg
[…] and […] The same problem has already been fixed in 2.1

Oct 22, 2006:

10:18 PM Changeset [2758] by Jari Häkkinen
Added information about extended properties.
10:18 PM Changeset [2757] by Jari Häkkinen
Added item to release recipe.
10:17 PM Changeset [2756] by Jari Häkkinen
Spell checked.
8:46 PM Ticket #406 (Storing extended properties like information as annotations?) created by Jari Häkkinen
There is reporter annotations stored as extended properties in the …
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6:46 PM InterMapTxt created by trac

Oct 20, 2006:

6:23 PM Ticket #405 (Highlight function in plot tool) created by Johan Vallon-Christersson
Add a new tab in the plot tool similar to the Filter tab. The function …
4:48 PM Changeset [2755] by Martin Svensson
References #335. Backup for the weekend.Plugins not quite ready yet.
2:12 PM Changeset [2754] by Nicklas Nordborg
Fixes #359: Sorting on mulitple columns in web tables
2:12 PM Ticket #359 (Sorting on mulitple columns in web tables) closed by Nicklas Nordborg
fixed: (In [2754]) Fixes #359: Sorting on mulitple columns in web tables
1:04 PM Ticket #404 (Replace deprecated Values class with the new one in all JSP pages) closed by Nicklas Nordborg
fixed: (In [2753]) Fixes #404: Replace deprecated Values class with the new …
1:04 PM Changeset [2753] by Nicklas Nordborg
Fixes #404: Replace deprecated Values class with the new one in all …
12:25 PM Ticket #404 (Replace deprecated Values class with the new one in all JSP pages) created by Nicklas Nordborg
Some time ago we moved the net.sf.basedb.clients.web.util.Values class …
12:23 PM Changeset [2752] by Nicklas Nordborg
Fixes #400: Negative values are not correctly displayed.
12:23 PM Ticket #400 (Negative values are not correctly displayed.) closed by Nicklas Nordborg
fixed: (In [2752]) Fixes #400: Negative values are not correctly displayed.
11:45 AM Ticket #403 (Make Bioassays and Bioassay sets annotatable) created by Johan Vallon-Christersson
Bioassays are currently not annotatable. It would, however, be …
11:42 AM Ticket #313 (Error handling in import plugins) closed by Nicklas Nordborg
fixed: (In [2751]) Fixes #313: Error handling in import plugins
11:42 AM Changeset [2751] by Nicklas Nordborg
Fixes #313: Error handling in import plugins
11:25 AM Ticket #402 (Add shortcut button for 'current item', 'current experiment' and ...) created by Johan Vallon-Christersson
If a session keeps track of the most recently viewed Experiment, …
11:14 AM Changeset [2750] by Nicklas Nordborg
Filter no longer create multiple child bioassays.
11:09 AM Ticket #401 (Filter plugin - failed to correctly apply filter on M values) created by Johan Vallon-Christersson
When applying a filter to create a filtered bioassay set using the …
11:01 AM Ticket #400 (Negative values are not correctly displayed.) created by Johan Vallon-Christersson
Negative M values are not displayed correctly in EExplorer. For …
9:22 AM Changeset [2749] by Nicklas Nordborg
Fixed bug that caused Lowess and Median normalizations to throw …
8:34 AM Changeset [2748] by Nicklas Nordborg
Added disabled version of "copy" icon.

Oct 19, 2006:

2:40 PM Ticket #399 (Losing Bioassay table in EExplorer when browsing positions) created by Johan Vallon-Christersson
When viewing a BioassaySet? in EExplorer the table over Bioassays …
2:16 PM Changeset [2747] by Johan Enell
Merged log:branches/2.0.1#2684:2740 to trunk.
11:53 AM Changeset [2746] by Nicklas Nordborg
Show only 30 rows as default.

Oct 18, 2006:

11:16 AM Ticket #354 (Copy transformation) closed by Nicklas Nordborg
fixed: (In [2745]) Fixes #354: Copy transformation
11:16 AM Changeset [2745] by Nicklas Nordborg
Fixes #354: Copy transformation
9:50 AM Ticket #398 (Version information in the "About" button) created by Jari Häkkinen
The version information always show 2.0, should it be bumped with …
9:47 AM Milestone BASE 2.0.2 completed
Problems and bugs found in 2.0.1 are attached to this milestone. …
9:47 AM Changeset [2744] by Jari Häkkinen
Added milestone update information when releasing a new version.
9:39 AM Changeset [2743] by Jari Häkkinen
Reordered the recipe for releasing new revision.
9:34 AM Changeset [2742] by Jari Häkkinen
New bug fix branch for 2.0.2
9:33 AM DownloadPage edited by Jari Häkkinen
2.0.2 released (diff)
9:25 AM Changeset [2741] by Jari Häkkinen
Tagging version 2.0.2
8:57 AM Changeset [2740] by Jari Häkkinen
Bumped version number.

Oct 17, 2006:

3:43 PM Changeset [2739] by Nicklas Nordborg
No longer needed since since FormulaFilter? is now an InteractivePlugin?.
3:42 PM Ticket #295 (Filter on selected bioassays) closed by Nicklas Nordborg
fixed: (In [2738]) Fixes #295: Filter on selected bioassays
3:42 PM Changeset [2738] by Nicklas Nordborg
Fixes #295: Filter on selected bioassays
9:46 AM Ticket #397 (Use the FindBugs program to check the BASE 2 code) created by Nicklas Nordborg
I recently tested the FindBugs? (http://findbugs.sourceforge.net/) …
8:53 AM Ticket #396 (Generic export function doesn't work when column names has a comma in them) closed by Nicklas Nordborg
fixed: (In [2737]) Fixes #396: Generic export function doesn't work when …
8:53 AM Changeset [2737] by Nicklas Nordborg
Fixes #396: Generic export function doesn't work when column names has …
8:42 AM Ticket #382 (A very minimal extended-properties.xml creates null pointer exceptions.) closed by Nicklas Nordborg
fixed: (In [2736]) Fixes #382: A very minimal extended-properties.xml creates …
8:42 AM Changeset [2736] by Nicklas Nordborg
Fixes #382: A very minimal extended-properties.xml creates null …
8:07 AM Ticket #382 (A very minimal extended-properties.xml creates null pointer exceptions.) reopened by Nicklas Nordborg
There are also JSP pages which are affected by this.
7:51 AM Ticket #396 (Generic export function doesn't work when column names has a comma in them) created by Nicklas Nordborg
[…]

Oct 16, 2006:

3:39 PM Changeset [2735] by Nicklas Nordborg
Double-click to move columns
2:38 PM Changeset [2734] by Johan Enell
fixes #380
2:32 PM Ticket #316 (Add support for color coding in data tables) closed by Nicklas Nordborg
fixed: (In [2733]) Fixes #316: Add support for color coding in data tables
2:32 PM Changeset [2733] by Nicklas Nordborg
Fixes #316: Add support for color coding in data tables
2:30 PM Ticket #391 (LowessNormalization has an if statement that does nothing.) closed by Johan Enell
fixed: (In [2732]) fixes #391
2:30 PM Changeset [2732] by Johan Enell
fixes #391
2:26 PM Ticket #380 (Bug in Lowess) closed by Johan Enell
fixed: (In [2731]) fixes #380
2:26 PM Changeset [2731] by Johan Enell
fixes #380

Oct 13, 2006:

7:18 PM Changeset [2730] by Jari Häkkinen
Fixes #395. Removed stray ' character.
7:18 PM Ticket #395 (typo in www/admin/plugindefinitions/edit_plugin.jsp) closed by Jari Häkkinen
fixed: (In [2730]) Fixes #395. Removed stray ' character.
6:52 PM Ticket #395 (typo in www/admin/plugindefinitions/edit_plugin.jsp) created by vegardny@…
On line 143 in www/admin/plugindefinitions/edit_plugin.jsp …
11:58 AM Ticket #394 (Make it possible to export and properly query values in components) created by Nicklas Nordborg
The ColoringData? component is the first component class we use in …

Oct 12, 2006:

11:43 PM Ticket #385 (Make sure that the distribution packaging script creates directories ...) closed by Jari Häkkinen
fixed: Fixed. The root cause of the problem was outside base project files.
11:12 PM Ticket #384 (Script files (.sh) do not have the proper file permission in linux) closed by Jari Häkkinen
fixed: Fixed in changeset:2729
11:06 PM Ticket #385 (Make sure that the distribution packaging script creates directories ...) reopened by Jari Häkkinen
8:47 PM Ticket #387 (Can't remove reporters from a Reporter List) closed by Nicklas Nordborg
invalid: This report was posted earlier today in the Hibernate bug tracking …
4:02 PM Changeset [2729] by Jari Häkkinen
Fixes #385. ant cannot keep file properties due to non-Java support …
4:02 PM Ticket #385 (Make sure that the distribution packaging script creates directories ...) closed by Jari Häkkinen
fixed: (In [2729]) Fixes #385. ant cannot keep file properties due to …
3:07 PM Changeset [2728] by Johan Enell
fixes 392
2:40 PM Ticket #392 (Typo in Base1PluginExecuter.java) closed by Johan Enell
fixed
1:28 PM Ticket #393 (Typo in Base1PluginExecuter) closed by Johan Enell
fixed: (In [2727]) Fixed typo in getBase1Columns fixes #393
1:28 PM Changeset [2727] by Johan Enell
Fixed typo in getBase1Columns fixes #393
1:27 PM Ticket #393 (Typo in Base1PluginExecuter) created by Johan Enell
Typo in …
1:08 PM Ticket #392 (Typo in Base1PluginExecuter.java) created by Robin Andersson <Robin.Andersson@…>
Hi, I found a typo in …
11:00 AM Ticket #390 (Increase the performance of IntensityCalculatorPlugin) closed by Nicklas Nordborg
fixed: Fixed in changeset [2726] Unfortunately MySQL doesn't seem to benefit …
10:58 AM Changeset [2726] by Nicklas Nordborg
8:15 AM Changeset [2725] by Nicklas Nordborg
Fixed NullPointerException? when stopping BASE.

Oct 11, 2006:

2:29 PM Changeset [2724] by Nicklas Nordborg
Fixes #388: When restarting a failed job it should be possible to …
2:29 PM Ticket #388 (When restarting a failed job it should be possible to select a new ...) closed by Nicklas Nordborg
fixed: (In [2724]) Fixes #388: When restarting a failed job it should be …
2:01 PM Changeset [2723] by Nicklas Nordborg
Fixes #389: Check the java and jsp files for System.out.println debug …
2:01 PM Ticket #389 (Check the java and jsp files for System.out.println debug output) closed by Nicklas Nordborg
fixed: (In [2723]) Fixes #389: Check the java and jsp files for …
1:59 PM Ticket #391 (LowessNormalization has an if statement that does nothing.) created by Nicklas Nordborg
Should something be happening here or can it be removed? […]
1:53 PM Ticket #386 (The AbstractEntityQuery.count() method doesn't enable filters) closed by Nicklas Nordborg
fixed: In changeset [2722]
1:37 PM Ticket #220 (Plugin permissions) closed by Nicklas Nordborg
fixed: (In [2722]) Fixes #220: Plugin permissions
1:37 PM Changeset [2722] by Nicklas Nordborg
Fixes #220: Plugin permissions
12:30 PM Ticket #390 (Increase the performance of IntensityCalculatorPlugin) created by Nicklas Nordborg
The current implementation always uses the IntensityCalculator?
9:26 AM Ticket #389 (Check the java and jsp files for System.out.println debug output) created by Nicklas Nordborg
I found two places just by accident. It is possible that there are more.
8:46 AM Ticket #388 (When restarting a failed job it should be possible to select a new ...) created by Nicklas Nordborg
Ticket #318 changed how a job gets the plugin configuration parameters …

Oct 10, 2006:

6:41 PM Changeset [2721] by Nicklas Nordborg
Removed debug output
3:39 PM Ticket #387 (Can't remove reporters from a Reporter List) created by simon
Steps performed: Selected a bunch of reporters via their ID (approx. …
11:42 AM Ticket #386 (The AbstractEntityQuery.count() method doesn't enable filters) created by Nicklas Nordborg
As a result, it counts all items, regardless of the query settings and …

Oct 9, 2006:

3:37 PM Changeset [2720] by Nicklas Nordborg
Fixes #382: A very minimal extended-properties.xml creates null …
3:37 PM Ticket #382 (A very minimal extended-properties.xml creates null pointer exceptions.) closed by Nicklas Nordborg
fixed: (In [2720]) Fixes #382: A very minimal extended-properties.xml creates …
9:52 AM Changeset [2719] by Martin Svensson
References #335. The first part of a plugin configuration importer. No …

Oct 6, 2006:

9:52 PM Ticket #385 (Make sure that the distribution packaging script creates directories ...) created by Jari Häkkinen
In the case of base-2.0.1.tar.gz the directory created in extracting …
9:49 PM Ticket #384 (Script files (.sh) do not have the proper file permission in linux) created by Jari Häkkinen
This applies for the binary package. Check if the source package is ok.
9:44 PM Changeset [2718] by Jari Häkkinen
Finalized information about publishing a new release.
9:42 PM Changeset [2717] by Jari Häkkinen
Removed obsolete branch. Superseded by source:/branches/2.0.1
9:23 PM Ticket #383 (Should more docs be shipped with the binary package?) created by Jari Häkkinen
As it is now only installation.html is shipped. Should we include …
9:02 PM Ticket #382 (A very minimal extended-properties.xml creates null pointer exceptions.) created by Jari Häkkinen
The bare minimum …
8:32 PM Ticket #381 (User with administrator rights cannot share items (files) to group Everyone) created by Jari Häkkinen
The Everyone group does not show up as an option when sharing files. …
2:26 PM Ticket #377 (hasData() flag not set on creation of new RawBioAssay, prevents ...) closed by Nicklas Nordborg
worksforme
10:46 AM Ticket #220 (Plugin permissions) reopened by Nicklas Nordborg
Reopened because the current solution with permission per thread …
8:05 AM Ticket #380 (Bug in Lowess) created by David Waring <dwaring@…>
There is a bug in the Lowess plugin. Looping through the blocks …
1:44 AM Changeset [2716] by Jari Häkkinen
Fixed typos.
1:41 AM Changeset [2715] by Jari Häkkinen
First steps toward user documentation.
1:23 AM Changeset [2714] by Jari Häkkinen
Added section heading for howto change extended properties.
1:20 AM Changeset [2713] by Jari Häkkinen
Added documentation about extended-properties.xml.
12:29 AM Changeset [2712] by Jari Häkkinen
Fixed spelling.
12:27 AM Changeset [2711] by Jari Häkkinen
Fixed links and added mysql/innodb tuning info.

Oct 5, 2006:

2:56 PM Changeset [2710] by Johan Enell
Merge commands has been added
2:36 PM Ticket #318 (Plugin configuration values are not stored for a job) closed by Nicklas Nordborg
fixed: (In [2709]) Fixes #318: Plugin configuration values are not stored for …
2:36 PM Changeset [2709] by Nicklas Nordborg
Fixes #318: Plugin configuration values are not stored for a job And …
8:38 AM Changeset [2708] by Nicklas Nordborg
Fixed bug with linking if item.type is empty

Oct 4, 2006:

11:12 PM Changeset [2707] by Jari Häkkinen
Spell checked.
10:25 PM Changeset [2706] by Jari Häkkinen
Creating sample extended-properties.xml files.
10:09 PM Ticket #379 (BASE2: Fails to display Raw data from a RawBioassay imported from ...) closed by Nicklas Nordborg
duplicate: This is a duplicate of ticket #99. A workaround is described in the …
5:43 PM Ticket #379 (BASE2: Fails to display Raw data from a RawBioassay imported from ...) created by simon.foote@…
I've done a migration from 1.2.17 to base 2.0. No glaring errors were …
4:46 PM Changeset [2705] by Jari Häkkinen
Removed references to RC2.
4:09 PM Changeset [2704] by Nicklas Nordborg
Fixes #343: Plot tool should be able to use other annotations than bioassay
4:09 PM Ticket #343 (Plot tool should be able to use other annotations than bioassay) closed by Nicklas Nordborg
fixed: (In [2704]) Fixes #343: Plot tool should be able to use other …
2:01 PM Changeset [2703] by Nicklas Nordborg
Fixed some threading problems with Keyring and plugin permissions.
1:59 PM Changeset [2702] by Nicklas Nordborg
Fixed unclosed DbControl?.
1:59 PM Changeset [2701] by Nicklas Nordborg
Deny access if role permission has DENIED flag set.
1:58 PM Changeset [2700] by Nicklas Nordborg
PluginRequest?.doInvoke() and SessionControl?.setActivePlugin() should …
1:55 PM Changeset [2699] by Nicklas Nordborg
Fixed unclosed DbControl? in case of an exception while updating the …
9:59 AM Changeset [2698] by Nicklas Nordborg
Fixed NoSuchElementException? bug when iterating over more than one …
9:14 AM Ticket #378 (Creation of configurations for plug-ins that do not need configs are ...) created by Jari Häkkinen
Many plug-ins do not need configurations and in consequence these …
8:43 AM Changeset [2697] by Nicklas Nordborg
References #368: Migration should migrate plugin settings for BASE 1 …

Oct 3, 2006:

5:00 PM Changeset [2696] by Martin Svensson
References #335 Export plugin for plugin configurations. Saves the …
3:47 PM Changeset [2695] by Nicklas Nordborg
Installation now installs Base1PluginExecuter plugin.
3:44 PM Tickets #201,​370,​371 batch updated by Nicklas Nordborg
fixed: (In [2694]) Fixes #201, #370 and #371 * Experiment directory * …
3:44 PM Changeset [2694] by Nicklas Nordborg
Fixes #201, #370 and #371 * Experiment directory * Hyperlink to …
3:41 PM Ticket #377 (hasData() flag not set on creation of new RawBioAssay, prevents ...) created by micha.bayer@…
When a new RawBioAssay? has been created and data have been imported …
1:44 PM Changeset [2693] by Nicklas Nordborg
Fixes #368: Migration should migrate plugin settings for BASE 1 plugins
1:44 PM Ticket #368 (Migration should migrate plugin settings for BASE 1 plugins) closed by Nicklas Nordborg
fixed: (In [2693]) Fixes #368: Migration should migrate plugin settings for …
1:30 PM Changeset [2692] by Martin Svensson
Fixes #220 Plugin permissions.
1:30 PM Ticket #220 (Plugin permissions) closed by Martin Svensson
fixed: (In [2692]) Fixes #220 Plugin permissions.
1:21 PM Ticket #220 (Plugin permissions) reopened by Martin Svensson
The plugin should ignore the owner- and project/shared permissions for …
9:35 AM Ticket #366 (Batch upload using zip-files) closed by Nicklas Nordborg
fixed: (In [2691]) Fixes #366: Batch upload using zip-files
9:35 AM Changeset [2691] by Nicklas Nordborg
Fixes #366: Batch upload using zip-files
8:28 AM Ticket #376 (Better system for checking which plugins that can be executed in a ...) created by Nicklas Nordborg
The current implementation leads to lots of situation where you think …

Oct 2, 2006:

4:44 PM Changeset [2690] by Johan Enell
Merged log:branches/2.0#2618:2688 from branch 2.0 to trunk.
4:04 PM Changeset [2689] by Nicklas Nordborg
References #366: Batch upload using zip-files Added plugin for zip …
3:00 PM Changeset [2688] by Nicklas Nordborg
Added AbsoluteProgressReporter? and two simple implementations.
2:05 PM Changeset [2687] by Johan Enell
extra values added to pluginexecuter
1:24 PM Milestone BASE 2.0.1 completed
Problems and bugs found in 2.0. These will be fixed ASAP. The next …
1:23 PM Ticket #332 (Fix bugs in migration program) closed by Jari Häkkinen
fixed: The known issues are fixed and we have made extensive manual testing …
12:43 PM Changeset [2686] by Jari Häkkinen
Added information on what to do when publishing a new release of BASE.
12:35 PM Changeset [2685] by Jari Häkkinen
New bug fix branch for 2.0.1.
12:29 PM DownloadPage edited by Jari Häkkinen
Added version information to the download table. (diff)
12:27 PM DownloadPage edited by Jari Häkkinen
Removed obsolete packages. (diff)
12:26 PM DownloadPage edited by Jari Häkkinen
Version 2.0.1 released. (diff)
11:44 AM Changeset [2684] by Jari Häkkinen
Tagging version 2.0.1
11:40 AM Changeset [2683] by Jari Häkkinen
Bumped version number. Added disclaimer text to migration.
10:50 AM Changeset [2682] by Jari Häkkinen
Spell checked.

Oct 1, 2006:

9:34 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) created by Jari Häkkinen
As it is now the properties view will tell the user that the item is …

Sep 29, 2006:

9:58 AM Changeset [2681] by Nicklas Nordborg
References #366: Batch upload using zip-files Added utility class and …

Sep 28, 2006:

4:33 PM Changeset [2680] by Martin Svensson
References #335 A beginning of a PluginConfigurationExporter?.
2:01 PM Changeset [2679] by Nicklas Nordborg
The AbstractFlatFileImporter?.requiresConfiguration() now returns true …
1:52 PM Ticket #361 (Export of bioassaysets) closed by Nicklas Nordborg
fixed: (In [2678]) Fixes #361: Export of bioassaysets
1:52 PM Changeset [2678] by Nicklas Nordborg
Fixes #361: Export of bioassaysets
11:54 AM Changeset [2677] by Nicklas Nordborg
Remember recently used files and other items when importing and …
11:06 AM Changeset [2676] by Nicklas Nordborg
Added image to Abort button in file upload. Added image for Browse buttons.
10:58 AM Changeset [2675] by Martin Svensson
Displaying permissions for a plugindefinition on it's view page.
10:03 AM Changeset [2674] by Nicklas Nordborg
Removed debug code
10:01 AM Ticket #169 (Use formulas for creating extra values) closed by Nicklas Nordborg
fixed: (In [2673]) Fixes #169: Use formulas for creating extra values Also …
10:01 AM Changeset [2673] by Nicklas Nordborg
Fixes #169: Use formulas for creating extra values Also added plugin …
9:49 AM Changeset [2672] by Martin Svensson
Corrupt page when open creating a new plugindefinition is fixed
8:06 AM DownloadPage edited by Nicklas Nordborg
(diff)
7:58 AM DownloadPage edited by Nicklas Nordborg
(diff)

Sep 27, 2006:

4:08 PM Ticket #220 (Plugin permissions) closed by Martin Svensson
fixed: (In [2671]) Fixes #220 Plugin permissions
4:08 PM Changeset [2671] by Martin Svensson
Fixes #220 Plugin permissions
3:47 PM Changeset [2670] by Nicklas Nordborg
Added "Add" and "Remove" images to default images.
1:44 PM Tickets #342,​344 batch updated by Nicklas Nordborg
fixed: (In [2669]) Fixes #342 and #344: Display extra values in plot tool and …
1:44 PM Changeset [2669] by Nicklas Nordborg
Fixes #342 and #344: Display extra values in plot tool and tables, etc.
11:58 AM Changeset [2668] by Nicklas Nordborg
Fixed problem in formatNumber method that displayed an extra minus …

Sep 26, 2006:

4:07 PM Changeset [2667] by Nicklas Nordborg
Added QueryElement?.getChildren() method.
2:59 PM Changeset [2666] by Nicklas Nordborg
Can now use the externalId in extra value expression with JEP.
1:36 PM Changeset [2665] by Nicklas Nordborg
Added a note about warning for an unclosed DbControl?
1:28 PM Changeset [2664] by Nicklas Nordborg
References #342, #344 and #169 Extra values are now displayed in a …
1:08 PM Changeset [2663] by Nicklas Nordborg
Added createJepExpression method
1:06 PM Changeset [2662] by Nicklas Nordborg
Added storeValue() method
1:00 PM Changeset [2661] by Nicklas Nordborg
Create copy of list of values to avoid external manipulation after the …
9:18 AM Ticket #374 (Restoring a Bioassayset or Transformation restores all child bioassay ...) created by Nicklas Nordborg
If you for example have marked one part of the analysis for deletion …
Note: See TracTimeline for information about the timeline view.