Timeline
Feb 7, 2007:
- 11:14 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) created by
- Here is the stacktrace: […] For more info see the mailing list …
- 11:10 PM Ticket #487 (Update script must check the schema version before trying to update) created by
- If the schema version is higher than expected the update script must …
- 12:45 PM DownloadPage edited by
- (diff)
- 12:45 PM DownloadPage edited by
- (diff)
- 12:36 PM Milestone BASE 2.2 completed
- Doc, help, larger feature changes.
- 12:36 PM DownloadPage edited by
- Releasing v2.2 (diff)
- 12:21 PM Changeset [3119] by
- New bug fix branch for 2.2
- 12:18 PM Ticket #457 (Update install instructions for release 2.2) closed by
- fixed
- 12:17 PM Changeset [3118] by
- Tagging version 2.2
- 12:15 PM Changeset [3117] by
- Changed link to BASE (MeV) hacks site.
- 11:14 AM Changeset [3116] by
- Bumped version number to 2.2.0. Added Micha to contribution list.
- 9:57 AM Changeset [3115] by
- Added text on how to stop unintentional migration.
- 2:14 AM Changeset [3114] by
- Cleaning.
- 2:13 AM Changeset [3113] by
- Updated installation document.
- 2:13 AM Changeset [3112] by
- Removed MeV export of an unneeded reporter column.
- 12:51 AM Changeset [3111] by
- Added MeV to the list of 3rd party components and to the tools list.
Feb 6, 2007:
- 4:18 PM Ticket #10 (Analysis: Hierarchical clustering) closed by
- fixed: Hierarchical clustering is now supported through MeV …
- 4:17 PM Ticket #352 (Connect parts of the TM4 software suite to BASE) closed by
- fixed: MeV is now integrated as a Java Web Start application. It requires …
- 3:59 PM Ticket #464 (Permission denied when creting AnyToAny) closed by
- fixed
- 3:55 PM Changeset [3110] by
- Addresses #10 and #352. Unique temporary filenames used at client side.
- 3:54 PM Changeset [3109] by
- Blank experimental factor labels are propagated properly in MeV export.
- 3:28 PM Changeset [3108] by
- BASE1PluginExecuter uses BioAssaySetExporter? to create basefile
- 3:26 PM Ticket #439 (Base file export) closed by
- fixed: (In [3107]) Fixes #439
- 3:26 PM Changeset [3107] by
- Fixes #439
- 3:11 PM Changeset [3106] by
- Addresses #10 and #352. Removed hard coded indexes for datamatrix …
- 3:09 PM Changeset [3105] by
- Addresses #10 and #352. MeV uses system tmp directory system properties.
- 11:03 AM Changeset [3104] by
- References #146. Added help texts for view user
- 11:00 AM Changeset [3103] by
- References #146. Modified the function of the toolbar that is used to …
- 10:14 AM Ticket #486 (Import raw data from the Illumina platform) created by
- A discussion about importing raw data from the Illumina platform was …
Feb 5, 2007:
- 11:02 PM Changeset [3102] by
- Addresses #10 and #352. MeV jsp uses Servlet API to retrieve server …
- 9:02 PM Ticket #365 (Use java web start to launch plug-ins) closed by
- fixed: Mulit experiment viewer, http://www.tm4.org, is started with web …
- 8:55 PM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) closed by
- fixed: Increasing the MaxPermSize? solves the problem. Our server is still …
- 8:53 PM Ticket #471 (Filenames with () are not treated well by trac) closed by
- fixed: Fixed in changeset:3066
- 4:43 PM Changeset [3101] by
- Addresses #10 and #352. Fixed problem with non-appearing tool icons in MeV.
- 3:18 PM Ticket #485 (A user's group membership is not listed.) created by
- You have a group, lets say Group A, where some users have been added …
- 12:19 PM Changeset [3100] by
- Addresses #10 and #352. Now actually using the bioassayset used to …
- 12:03 PM Changeset [3099] by
- Moved max heap size tag to correct tag.
- 11:52 AM Changeset [3098] by
- References #10: Hierarchical clustering Added servlet for downloading …
- 11:49 AM Changeset [3097] by
- Fixed permission check problem that caused a query to return items the …
- 11:37 AM Changeset [3096] by
- Addresses #10, #352, #365. First checkin for JWS use to launch MeV.
- 10:58 AM Changeset [3095] by
- Fixed so the list page of plate mappings not are corrupt when user …
- 8:09 AM Changeset [3094] by
- Fixes #483: Add a direct start icon for export of bioassaysets in …
- 8:09 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) closed by
- fixed: (In [3094]) Fixes #483: Add a direct start icon for export of …
- 7:42 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) created by
- The export plug-in does not show up in the plug-in list for running …
Feb 2, 2007:
- 11:39 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) created by
- As it is now the user has to select a specific bioassayset to get a …
Feb 1, 2007:
- 4:41 PM Changeset [3093] by
- References #146. Added group.edit... helptexts and began at role.edit…
Jan 31, 2007:
- 10:30 PM Ticket #482 (Check that reporters really exists before using them ....) closed by
- duplicate: Duplicate of #435
- 8:32 PM Ticket #482 (Check that reporters really exists before using them ....) created by
- With Affymetrix it is possible to create an array design and associate …
- 8:27 PM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) created by
- As it is now number of new and updated reporters are reporter. For …
- 8:12 PM Changeset [3092] by
- Added another affymetrix reporter importer configuration.
- 7:55 PM Ticket #480 (Verify values in extended-properties.xml and raw-data-types.xml) created by
- Empty column names are, for example, passed through and later an error …
- 3:15 PM Changeset [3091] by
- References #146 Added helptexts for editing user. Set svn:eol-style on …
Jan 30, 2007:
- 10:26 AM Changeset [3090] by
- References #440: Update to latest versions of 3rd-party software …
Jan 29, 2007:
- 4:13 PM Changeset [3089] by
- BASE now throws right exception when trying to save a new user with a …
- 2:52 PM Changeset [3088] by
- Marked the password field to be required when editing a new user.
- 2:45 PM Changeset [3087] by
- Make sure DbControl? is closed
- 2:45 PM Changeset [3086] by
- Fixes #466: Remaining Quantity not display in extracts
- 2:45 PM Ticket #466 (Remaining Quantity not display in extracts) closed by
- fixed: (In [3086]) Fixes #466: Remaining Quantity not display in extracts
- 1:29 PM RobotsTxt created by
- Adding web indexing robot repellent.
- 1:28 PM DeveloperInformation edited by
- Adding web indexing robot repellent. (diff)
- 10:46 AM Ticket #479 (BioAssaySetExport should allow immediate download.) created by
- This relates to the fixed ticket:189. Read the last comment, …
- 10:42 AM Ticket #440 (Update to latest versions of 3rd-party software) closed by
- fixed: (In [3085]) Fixes #440: Update to latest versions of 3rd-party software
- 10:42 AM Changeset [3085] by
- Fixes #440: Update to latest versions of 3rd-party software
- 10:23 AM WikiStart edited by
- (diff)
Jan 26, 2007:
- 4:07 PM Changeset [3084] by
- Added a help text for column configuration
Jan 25, 2007:
- 8:57 AM Changeset [3083] by
- Correct a parameter in genepix-dyeswap configuration for the …
Jan 24, 2007:
- 9:10 AM Changeset [3082] by
- Fixes #478 Plate Importer requests more permissions
- 9:10 AM Ticket #478 (Plate Importer requests more permissions) closed by
- fixed: (In [3082]) Fixes #478 Plate Importer requests more permissions
- 8:49 AM Ticket #478 (Plate Importer requests more permissions) created by
- The Plate importer plugin requests read permission on plates but has …
Jan 23, 2007:
- 10:15 AM Ticket #473 (Cannot import a plug-in configuration as administrator (not 'root' user)) closed by
- duplicate: Ok, then it is the same as #476. I am closing this as a duplicate.
- 9:52 AM Changeset [3081] by
- Remarks added for each configuration in the list.
Jan 22, 2007:
- 4:40 PM Changeset [3080] by
- Gave the edit-toolbar a proper BASE2-look.
- 4:02 PM Changeset [3079] by
- References #466: Remaining Quantity not display in extracts Fixed …
- 2:51 PM Changeset [3078] by
- References #459: Better error message if plugin jar can't be found …
- 2:15 PM Ticket #431 (Multiple tables from the Table taglib on the same HTML page interfere ...) closed by
- fixed: (In [3077]) Fixes #431: Multiple tables from the Table taglib on the …
- 2:15 PM Changeset [3077] by
- Fixes #431: Multiple tables from the Table taglib on the same HTML …
- 1:37 PM Ticket #340 (Experiment validation tool) closed by
- fixed
- 1:36 PM Ticket #262 (Overview of an experiment) closed by
- fixed
- 12:20 PM Changeset [3076] by
- Added better log messages to find out where unclosed DbControl:s are …
- 12:02 PM Ticket #475 (Error running RMAExpress plug-in to create new root bioassay.) closed by
- fixed: (In [3075]) Fixes #475: Error running RMAExpress plug-in to create new …
- 12:02 PM Changeset [3075] by
- Fixes #475: Error running RMAExpress plug-in to create new root bioassay.
- 11:16 AM Ticket #476 ("Import" button is not shown even if the user has permission to use an ...) closed by
- fixed: (In [3074]) Fixes #476: "Import" button is not shown even if the user …
- 11:16 AM Changeset [3074] by
- Fixes #476: "Import" button is not shown even if the user has …
- 10:57 AM Changeset [3073] by
- Fixes #477: Creating a child item in the same transaction as the …
- 10:57 AM Ticket #477 (Creating a child item in the same transaction as the parent item gives ...) closed by
- fixed: (In [3073]) Fixes #477: Creating a child item in the same transaction …
- 9:54 AM Ticket #477 (Creating a child item in the same transaction as the parent item gives ...) created by
- For example: […] Happens because the permission check in …
Jan 21, 2007:
- 10:23 PM Changeset [3072] by
- Fixed another path problem when running server on Windows
- 10:15 PM Ticket #476 ("Import" button is not shown even if the user has permission to use an ...) created by
- From a comment in ticket #473: Another problem related to …
- 8:18 PM Ticket #474 (Creation of new plug-in definition throws an exception if jar is not ...) closed by
- duplicate: Duplicate and fixed by ticket #459.
- 6:04 PM Ticket #475 (Error running RMAExpress plug-in to create new root bioassay.) created by
- I get "Error: Table 'base2dynamic.d1rawparents' doesn't exist" when …
- 5:34 PM Ticket #474 (Creation of new plug-in definition throws an exception if jar is not ...) created by
- but this exception should be caught and a nicer output could returned …
Jan 18, 2007:
- 11:27 PM Ticket #473 (Cannot import a plug-in configuration as administrator (not 'root' user)) created by
- Running BASE 2.1.2 won't allow other administators than the default …
- 9:34 PM Changeset [3071] by
- Removed obsolete branch.
- 3:13 PM Changeset [3070] by
- Added core plugins link to admin docs list.
- 3:04 PM Changeset [3069] by
- Added remark column and increased page width.
- 1:20 PM Changeset [3068] by
- Merged log:branches/2.1.2#2991:3059 to trunk
- 11:59 AM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) created by
- I get java.lang.OutOfMemoryError: PermGen space error when running …
- 11:31 AM Changeset [3067] by
- Remove CR characters from files and fixing svn:eol-style property.
- 11:25 AM Changeset [3066] by
- Removed parantheses in filenames. Trac cannot handle these in the …
- 11:23 AM Changeset [3065] by
- Added copyright statement.
- 11:01 AM Changeset [3064] by
- Added Affymetrix reporter (probeset) importer configuration.
Jan 15, 2007:
- 4:12 PM Changeset [3063] by
- Now get info about CEL and CDF file for affymetrix experiments. …
- 2:39 PM Changeset [3062] by
- References #262 and #340: Added possibility to save preset for …
- 10:48 AM Ticket #465 ('Encrypt password' checkbox should not be visible when external ...) closed by
- fixed: (In [3061]) Fixes #465: 'Encrypt password' checkbox should not be …
- 10:48 AM Changeset [3061] by
- Fixes #465: 'Encrypt password' checkbox should not be visible when …
- 10:09 AM Ticket #471 (Filenames with () are not treated well by trac) created by
- There are som doc related files linked from …
Jan 14, 2007:
- 9:35 PM WikiStart edited by
- Added link to core plug-ins list. (diff)
- 9:00 PM DownloadPage edited by
- 2.1.2 released (diff)
- 8:41 PM Changeset [3060] by
- Tagging version 2.1.2
- 8:35 PM Changeset [3059] by
- Bumped version number.
- 8:32 PM Milestone BASE 2.1.2 completed
- Issues assigned to this milestone will be fixed ASAP.
- 8:32 PM Ticket #454 (File upload times out) closed by
- fixed: The fix is now working on my slow connection test machines.
- 7:47 PM Ticket #470 (Improve batch upload to support tar:ed files) created by
- The support should include tar files that has been gzipped or bzipped.
Jan 12, 2007:
- 3:23 PM Changeset [3058] by
- Added one more configuration file for download in the plugin list. …
Jan 11, 2007:
- 3:00 PM Changeset [3057] by
- References #146 Added a tag/menu to symbolize menu names in helptexts. …
Jan 10, 2007:
- 8:37 PM Ticket #469 (Improve error handling of invalid values in import plugins) created by
- Relates to ticket:573 The following was sent to the BASE mailing list …
- 8:14 PM Ticket #468 (File upload fails) closed by
- invalid: Either the directory for uploaded file you have configured in your …
- 8:12 PM Ticket #467 (GPR import problem) closed by
- fixed: This has already been fixed and will be included in the BASE 2.2 release.
- 4:20 PM Ticket #468 (File upload fails) created by
- When I upload a file with user Root, I get: Base version 2.0 (build …
- 12:26 PM Ticket #467 (GPR import problem) created by
- Hello, I couldn't use neither the Cy5/cy3 gpr import plugin or the …
- 11:48 AM Ticket #466 (Remaining Quantity not display in extracts) created by
- Hello, I thought Bug #448 seems to fix this problem, however I still …
- 9:32 AM Changeset [3056] by
- Changed requirements on tomcat to 5.5.16 or later.
- 9:31 AM Ticket #452 (Add BASEfile to the list of supported formats for BioAssaySetExporter ...) closed by
- fixed: (In [3055]) Fixes #452
- 9:31 AM Changeset [3055] by
- Fixes #452
- 9:23 AM Ticket #465 ('Encrypt password' checkbox should not be visible when external ...) created by
- We need the password in clearwhen using external authentication and …
Jan 9, 2007:
- 7:54 PM Ticket #463 (Incompatible conditional operand types String and int) closed by
- invalid
- 2:46 PM Changeset [3054] by
- Moved the core plugin list to administration documentation
- 12:51 PM Changeset [3053] by
- Removed the coreplugins.html from the doc/user/ catalog.
- 9:12 AM Ticket #459 (Better error message if plugin jar can't be found) closed by
- fixed: (In [3052]) Fixes #459 Better error message if plugin jar can't be found
- 9:12 AM Changeset [3052] by
- Fixes #459 Better error message if plugin jar can't be found
Jan 8, 2007:
- 1:50 PM Changeset [3051] by
- References #262 and #340: Some minor improvements and fixes
- 1:44 PM Changeset [3050] by
- References #440: Update to latest versions of 3rd-party software …
- 11:52 AM Ticket #412 (Fix build.xml to make it more developer-friendly) closed by
- fixed
- 10:00 AM Changeset [3049] by
- References #464: Permission denied when creting AnyToAny? I think this …
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