Timeline
Mar 5, 2007:
- 4:47 PM Changeset [3160] by
- Added the files for developer documentation and set the parser to …
- 4:24 PM Changeset [3159] by
- Changed the way the "chapter" files are included in the documentation …
- 3:09 PM Changeset [3158] by
- Created files for admin documentation
- 2:43 PM Changeset [3157] by
- Created files for user- and overview documentation
- 1:47 PM Changeset [3156] by
- Added info about how to build the docbook documentation. Clean up …
- 1:38 PM Changeset [3155] by
- Ignore generated docbook documentation
- 1:35 PM Changeset [3154] by
- A couple of more new lines to the contents of documentation
- 1:34 PM Changeset [3153] by
- Added docbook DTD:s and stylesheets
Mar 1, 2007:
- 2:48 PM Ticket #505 (where should be were) created by
- 'Where' is displayed when 'were' is expected For example * No …
Feb 26, 2007:
- 12:22 PM Changeset [3152] by
- Fixes #499: Add Hql.entity(BasicData?) method
- 12:22 PM Ticket #499 (Add Hql.entity(BasicData) method) closed by
- fixed: (In [3152]) Fixes #499: Add Hql.entity(BasicData?) method
- 12:10 PM Changeset [3151] by
- Added line about API changes and backwards compatibility
- 11:45 AM Ticket #501 (Make members of a project readable by all other members) closed by
- fixed: (In [3150]) Fixes #501: Make members of a project readable by all …
- 11:44 AM Changeset [3150] by
- Fixes #501: Make members of a project readable by all other members
- 10:48 AM Changeset [3149] by
- Fixes #502: Experiment Overview warns about missing 'Required by …
- 10:48 AM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) closed by
- fixed: (In [3149]) Fixes #502: Experiment Overview warns about missing …
Feb 25, 2007:
- 11:34 AM Ticket #504 (Use different icon for inherited annotations in the tree in Experiment ...) created by
- Also, display information about which item the annotation is inherited …
- 11:32 AM Ticket #503 (Display more info about items in Experiment overview) created by
- When you click on an item in the tree on the left side the right side …
Feb 24, 2007:
- 7:10 PM Ticket #502 (Experiment Overview warns about missing 'Required by MIAME' ...) created by
- WindowsXP Apache 5.5.15 Base2.3.0 trunk -AnnotationType? defined and …
Feb 23, 2007:
- 8:45 PM Ticket #501 (Make members of a project readable by all other members) created by
- To get READ permission for a USER item the logged in user must either …
- 8:42 PM Ticket #500 (Document the Include class) created by
- As it is now it is not very useful. * There is no information about …
- 8:36 PM Ticket #499 (Add Hql.entity(BasicData) method) created by
- To complement the Hql.entity(BasicItem?) method.
- 4:12 PM Changeset [3148] by
- Contents of documentation
- 8:14 AM Changeset [3147] by
- References #146. Added help texts for user.preferences
- 5:54 AM Changeset [3146] by
- More added to the content of documentation
Feb 21, 2007:
- 3:37 PM Changeset [3145] by
- Added more to the content of documentation
- 3:23 PM Ticket #498 (Move Array batches on Array design view page) created by
- Array batches tend to be very far down on a view page for an array …
Feb 20, 2007:
- 3:13 PM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) closed by
- fixed: (In [3144]) Fixes #484 Export plug-in is not shown in plug-ins list
- 3:13 PM Changeset [3144] by
- Fixes #484 Export plug-in is not shown in plug-ins list
- 3:11 PM Changeset [3143] by
- Added draft for table of contents of documentation
- 10:52 AM Changeset [3142] by
- Fixes #493 Trashcan display item owned by other users in some cases
- 10:52 AM Ticket #493 (Trashcan display item owned by other users in some cases) closed by
- fixed: (In [3142]) Fixes #493 Trashcan display item owned by other users in …
- 10:35 AM Changeset [3141] by
- Bumped version to 2.2.2pre
- 9:12 AM Changeset [3140] by
- Fixes #495: Pb when creating Hybs from Labeled Extracts View Page
- 9:12 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) closed by
- fixed: (In [3140]) Fixes #495: Pb when creating Hybs from Labeled Extracts …
- 9:08 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) closed by
- fixed: (In [3139]) Fixes #496: Minor Display Glitch on 'Annotation & …
- 9:08 AM Changeset [3139] by
- Fixes #496: Minor Display Glitch on 'Annotation & Parameter' Tab on …
- 8:34 AM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) closed by
- fixed: (In [3138]) Fixes #497: Floating point numbers with leading zeroes in …
- 8:34 AM Changeset [3138] by
- Fixes #497: Floating point numbers with leading zeroes in the decimal …
Feb 19, 2007:
- 1:55 PM Ticket #494 (Unexpected Error on JSP for Experiment Overview) closed by
- fixed: (In [3137]) Fixes #494 Unexpected Error on JSP for Experiment Overview
- 1:55 PM Changeset [3137] by
- Fixes #494 Unexpected Error on JSP for Experiment Overview
- 11:11 AM Ticket #466 (Remaining Quantity not display in extracts) closed by
- fixed: (In [3136]) Fixes #466 Remaining Quantity not displayed in extracts.
- 11:11 AM Changeset [3136] by
- Fixes #466 Remaining Quantity not displayed in extracts.
Feb 16, 2007:
- 9:10 AM Changeset [3135] by
- Added missing import statement.
- 9:04 AM Changeset [3134] by
- Changed to also get shared projects.
- 8:58 AM Changeset [3133] by
- Merged log:trunk#3001:3128 into this branch.
Feb 15, 2007:
- 3:11 PM Ticket #497 (Floating point numbers with leading zeroes in the decimal part are not ...) created by
- Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
- 9:56 AM Ticket #496 (Minor Display Glitch on 'Annotation & Parameter' Tab on all Item View) created by
- Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
- 9:50 AM Ticket #495 (Pb when creating Hybs from Labeled Extracts View Page) created by
- Version BASE 2.3.0pre (build #3130; schema #29) Web server Apache …
- 9:40 AM Ticket #494 (Unexpected Error on JSP for Experiment Overview) created by
- I have loaded 2 experiments, one gives me the following problem …
Feb 13, 2007:
- 9:45 AM Ticket #493 (Trashcan display item owned by other users in some cases) created by
- If logged in as a user with admin permissions this user is able to see …
- 2:05 AM Changeset [3132] by
- Removed stray carriage return characters.
- 2:03 AM Changeset [3131] by
- Removed stray carriage return characters.
- 1:42 AM Changeset [3130] by
- Fixed Id tag.
Feb 12, 2007:
- 1:31 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) closed by
- fixed: (In [3129]) Fixes #489: Build #0 is reported after upgrade to 2.2 and …
- 1:31 PM Changeset [3129] by
- Fixes #489: Build #0 is reported after upgrade to 2.2 and 2.2.1 …
- 11:59 AM Ticket #490 (BASE demo server issue) closed by
- fixed
- 11:32 AM Ticket #349 (Callback for events to plugins) closed by
- wontfix
- 11:26 AM Ticket #212 (Array slide import plugin) closed by
- wontfix
- 11:20 AM Ticket #23 (Apply button in popup windows?) closed by
- wontfix
- 11:16 AM Ticket #492 (Web services) created by
- The outline for the web services implementation: 1. We are going to …
Feb 9, 2007:
- 10:26 PM WikiStart edited by
- Replaced 2.0 with 2. Also removed ref to old demo server. (diff)
- 4:39 PM Changeset [3128] by
- Added javadoc
- 12:22 PM Ticket #491 (MeV plugin shows tag 'ExperimentalFactor' for genes in 'Display' menu) created by
- which it should not do. The ExperimentalFactors tag is an internal …
- 1:57 AM Ticket #490 (BASE demo server issue) created by
- […]
Feb 8, 2007:
- 4:04 PM Milestone BASE 2.2.1 completed
- Bug fixes for the 2.2 release.
- 4:04 PM Changeset [3127] by
- Removed obsolete branch 2.2.1.
- 3:57 PM Changeset [3126] by
- Merged log:branches/2.2.1#3119:3123 trunk.
- 2:39 PM Ticket #489 (Build #0 is reported after upgrade to 2.2 and 2.2.1) created by
- 2:35 PM DownloadPage edited by
- 2.2.1 released. (diff)
- 2:28 PM Changeset [3125] by
- New bug six branch for 2.2
- 2:18 PM Changeset [3124] by
- Tagging version 2.2.1
- 2:17 PM Changeset [3123] by
- Bumped version to 2.2.1
- 2:04 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) closed by
- fixed: This issue is returned to the original ticket:466. The upgrade problem …
- 1:53 PM Ticket #466 (Remaining Quantity not display in extracts) reopened by
- Reopened since the previous upgrade failed.
- 12:11 PM Ticket #487 (Update script must check the schema version before trying to update) closed by
- fixed: (In [3122]) Fixes #487. Update script must check the schema version …
- 12:11 PM Changeset [3122] by
- Fixes #487. Update script must check the schema version before trying …
- 11:47 AM Changeset [3121] by
- References #488. Update schema version without validating the measured …
- 10:38 AM Changeset [3120] by
- References #488. Update schema version without validating the measured …
- 10:10 AM DownloadPage edited by
- (diff)
Feb 7, 2007:
- 11:14 PM Ticket #488 (Upgrade 2.1.1 to 2.2 fails) created by
- Here is the stacktrace: […] For more info see the mailing list …
- 11:10 PM Ticket #487 (Update script must check the schema version before trying to update) created by
- If the schema version is higher than expected the update script must …
- 12:45 PM DownloadPage edited by
- (diff)
- 12:45 PM DownloadPage edited by
- (diff)
- 12:36 PM Milestone BASE 2.2 completed
- Doc, help, larger feature changes.
- 12:36 PM DownloadPage edited by
- Releasing v2.2 (diff)
- 12:21 PM Changeset [3119] by
- New bug fix branch for 2.2
- 12:18 PM Ticket #457 (Update install instructions for release 2.2) closed by
- fixed
- 12:17 PM Changeset [3118] by
- Tagging version 2.2
- 12:15 PM Changeset [3117] by
- Changed link to BASE (MeV) hacks site.
- 11:14 AM Changeset [3116] by
- Bumped version number to 2.2.0. Added Micha to contribution list.
- 9:57 AM Changeset [3115] by
- Added text on how to stop unintentional migration.
- 2:14 AM Changeset [3114] by
- Cleaning.
- 2:13 AM Changeset [3113] by
- Updated installation document.
- 2:13 AM Changeset [3112] by
- Removed MeV export of an unneeded reporter column.
- 12:51 AM Changeset [3111] by
- Added MeV to the list of 3rd party components and to the tools list.
Feb 6, 2007:
- 4:18 PM Ticket #10 (Analysis: Hierarchical clustering) closed by
- fixed: Hierarchical clustering is now supported through MeV …
- 4:17 PM Ticket #352 (Connect parts of the TM4 software suite to BASE) closed by
- fixed: MeV is now integrated as a Java Web Start application. It requires …
- 3:59 PM Ticket #464 (Permission denied when creting AnyToAny) closed by
- fixed
- 3:55 PM Changeset [3110] by
- Addresses #10 and #352. Unique temporary filenames used at client side.
- 3:54 PM Changeset [3109] by
- Blank experimental factor labels are propagated properly in MeV export.
- 3:28 PM Changeset [3108] by
- BASE1PluginExecuter uses BioAssaySetExporter? to create basefile
- 3:26 PM Ticket #439 (Base file export) closed by
- fixed: (In [3107]) Fixes #439
- 3:26 PM Changeset [3107] by
- Fixes #439
- 3:11 PM Changeset [3106] by
- Addresses #10 and #352. Removed hard coded indexes for datamatrix …
- 3:09 PM Changeset [3105] by
- Addresses #10 and #352. MeV uses system tmp directory system properties.
- 11:03 AM Changeset [3104] by
- References #146. Added help texts for view user
- 11:00 AM Changeset [3103] by
- References #146. Modified the function of the toolbar that is used to …
- 10:14 AM Ticket #486 (Import raw data from the Illumina platform) created by
- A discussion about importing raw data from the Illumina platform was …
Feb 5, 2007:
- 11:02 PM Changeset [3102] by
- Addresses #10 and #352. MeV jsp uses Servlet API to retrieve server …
- 9:02 PM Ticket #365 (Use java web start to launch plug-ins) closed by
- fixed: Mulit experiment viewer, http://www.tm4.org, is started with web …
- 8:55 PM Ticket #472 (java.lang.OutOfMemoryError: PermGen space) closed by
- fixed: Increasing the MaxPermSize? solves the problem. Our server is still …
- 8:53 PM Ticket #471 (Filenames with () are not treated well by trac) closed by
- fixed: Fixed in changeset:3066
- 4:43 PM Changeset [3101] by
- Addresses #10 and #352. Fixed problem with non-appearing tool icons in MeV.
- 3:18 PM Ticket #485 (A user's group membership is not listed.) created by
- You have a group, lets say Group A, where some users have been added …
- 12:19 PM Changeset [3100] by
- Addresses #10 and #352. Now actually using the bioassayset used to …
- 12:03 PM Changeset [3099] by
- Moved max heap size tag to correct tag.
- 11:52 AM Changeset [3098] by
- References #10: Hierarchical clustering Added servlet for downloading …
- 11:49 AM Changeset [3097] by
- Fixed permission check problem that caused a query to return items the …
- 11:37 AM Changeset [3096] by
- Addresses #10, #352, #365. First checkin for JWS use to launch MeV.
- 10:58 AM Changeset [3095] by
- Fixed so the list page of plate mappings not are corrupt when user …
- 8:09 AM Changeset [3094] by
- Fixes #483: Add a direct start icon for export of bioassaysets in …
- 8:09 AM Ticket #483 (Add a direct start icon for export of bioassaysets in analysis tree) closed by
- fixed: (In [3094]) Fixes #483: Add a direct start icon for export of …
- 7:42 AM Ticket #484 ('Run plugin' button has misleading label since it only runs analysis ...) created by
- The export plug-in does not show up in the plug-in list for running …
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