Timeline



Jun 30, 2007:

1:02 AM RobotsTxt edited by Jari Häkkinen
(diff)
12:24 AM DownloadPage edited by Jari Häkkinen
2.3.2 released. (diff)
12:11 AM Changeset [3543] by Jari Häkkinen
Tagging version 2.3.2

Jun 29, 2007:

11:31 PM Changeset [3542] by Jari Häkkinen
Bumping version number.
11:29 PM Ticket #191 (Mobile number field in user info?) reopened by Nicklas Nordborg
I think the schema version should be updated as well. The extended …
4:46 PM Tickets #661,​662 batch updated by Johan Enell
fixed: (In [3541]) Fixes #661, #662
4:46 PM Changeset [3541] by Johan Enell
Fixes #661, #662
2:39 PM Changeset [3540] by Peter Johansson
corrected address to BASE-hacks trac site
2:35 PM Ticket #191 (Mobile number field in user info?) closed by Martin Svensson
fixed: (In [3539]) Fixes #191 Mobile number field in user info?
2:35 PM Changeset [3539] by Martin Svensson
Fixes #191 Mobile number field in user info?
2:30 PM Ticket #660 (Parameters should be sorted on position) closed by Johan Enell
fixed: (In [3538]) Fixes #660 Added permission delete for File and read for Job
2:30 PM Changeset [3538] by Johan Enell
Fixes #660 Added permission delete for File and read for Job
9:54 AM Ticket #662 (Print 'section\tsettings') created by Johan Enell
If the first parameter isn't section, 'section\tsettings' should be …
9:50 AM Ticket #661 (Print parameters in correct order) created by Johan Enell
The parameters sent to BioAssaySetExporter?.exportBaseFile should be …
9:45 AM Ticket #660 (Parameters should be sorted on position) created by Johan Enell
The job parameters that the Base1PluginExecuter sends to …
9:36 AM Changeset [3537] by Jari Häkkinen
New patch release branch for 2.3
9:09 AM Changeset [3536] by Martin Svensson
References #625. This will correct the issue related to #657

Jun 28, 2007:

7:10 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) closed by Nicklas Nordborg
duplicate: Should be fixed as part of #625.
7:09 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) reopened by Nicklas Nordborg
The checked in changes fixes the problem, but it also destroys the fix …
5:43 PM Changeset [3535] by Martin Svensson
References #191
4:13 PM Ticket #658 (Invalid request ID: Data in your configuration wizard has become ...) closed by Martin Svensson
worksforme
3:40 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) closed by Martin Svensson
fixed
2:53 PM Changeset [3534] by Martin Svensson
References #657
1:46 PM Ticket #659 (Add wiki page describing BASE features) created by Johan Enell
A features list could useful from the fist page in the wiki. …
1:21 AM Ticket #658 (Invalid request ID: Data in your configuration wizard has become ...) created by Jari Häkkinen
I am trying to start RMAExpress/Plier, but after selecting bioassays …
12:22 AM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) created by Jari Häkkinen
the affymetrix INTENSITY plug-ins are not recognized. When "New root …

Jun 27, 2007:

11:22 PM Changeset [3533] by Jari Häkkinen
Merged log:trunk#3433:3532 into the webservices branch.
10:33 PM Ticket #656 (Update release procedure) created by Jari Häkkinen
4:35 PM Ticket #358 (Better info from Migration tool) closed by Martin Svensson
fixed: (In [3532]) Fixes #358 Better info from migration tool
4:35 PM Changeset [3532] by Martin Svensson
Fixes #358 Better info from migration tool

Jun 26, 2007:

1:12 PM Changeset [3531] by Martin Svensson
References #358. Some changes on the log statements

Jun 25, 2007:

10:05 AM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) created by Jari Häkkinen
illegal attempt to dereference collection …

Jun 23, 2007:

8:31 PM Ticket #654 (Batch deletion of reporters) created by Nicklas Nordborg
From a mail exchange with Phillippe: >> Just a note regarding deleting …

Jun 22, 2007:

11:22 AM Changeset [3530] by Johan Enell
some admin changes

Jun 21, 2007:

5:16 PM Changeset [3529] by Martin Svensson
References #358. Use log4j properly in migration. Updated more …
4:20 PM Ticket #648 (Average method for formulas and extra values) closed by Johan Enell
fixed: (In [3528]) AverageMethod? added Fixes #648
4:20 PM Changeset [3528] by Johan Enell
AverageMethod? added Fixes #648
1:19 PM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) closed by Nicklas Nordborg
fixed: (In [3527]) Fixes #642: Add method that finds an enumerated annotation …
1:19 PM Changeset [3527] by Nicklas Nordborg
Fixes #642: Add method that finds an enumerated annotation value that …
12:50 PM Ticket #252 (Make the trashcan smarter when deleting items) closed by Nicklas Nordborg
fixed: (In [3526]) Fixes #252: Make the trashcan smarter when deleting items
12:50 PM Changeset [3526] by Nicklas Nordborg
Fixes #252: Make the trashcan smarter when deleting items
8:22 AM Ticket #653 (Implement DbControl.flush() method) created by Nicklas Nordborg
This method should flush queued changes to the database in the same …

Jun 20, 2007:

5:33 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) closed by Nicklas Nordborg
duplicate: I have now been able to reproduce this problem. It is triggered when a …
4:56 PM Changeset [3525] by Martin Svensson
References #358. Use log4j properly in migration. Updated more files…
3:01 PM Changeset [3524] by Nicklas Nordborg
References #583: Send message at job completion only if user has …
2:32 PM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) closed by Nicklas Nordborg
fixed: (In [3523]) Fixes #583: Allow changing the array design of a raw …
2:32 PM Changeset [3523] by Nicklas Nordborg
Fixes #583: Allow changing the array design of a raw bioasay when it …
1:28 PM Changeset [3522] by Johan Enell
Fixes #650 added some info to the geometricMean method
1:28 PM Ticket #650 (Geometric mean) closed by Johan Enell
fixed: (In [3522]) Fixes #650 added some info to the geometricMean method
10:44 AM Changeset [3521] by Nicklas Nordborg
Fixes #556: Add a favicon.ico
10:44 AM Ticket #556 (Add a favicon.ico) closed by Nicklas Nordborg
fixed: (In [3521]) Fixes #556: Add a favicon.ico
9:36 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) closed by Nicklas Nordborg
fixed: (In [3520]) Fixes #652: Experiment explorer throws exception when …
9:36 AM Changeset [3520] by Nicklas Nordborg
Fixes #652: Experiment explorer throws exception when showing average …
9:20 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) created by Nicklas Nordborg
Go to the Experiment explorer for an experiment. 1. Display more …
9:00 AM Changeset [3519] by Nicklas Nordborg
References #625. Fixed ClassCastException? when using auto-detect and …
8:48 AM Ticket #637 (Multiple plugin configurations gets mixed up.) closed by Nicklas Nordborg
fixed: (In [3518]) Fixes #637
8:48 AM Changeset [3518] by Nicklas Nordborg
Fixes #637

Jun 19, 2007:

4:20 PM Changeset [3517] by Johan Enell
References #650 Creates Ql and String from the parts already made in …
3:38 PM Ticket #650 (Geometric mean) reopened by Nicklas Nordborg
The LN() and EXP() functions have different names in different …
2:10 PM Changeset [3516] by Jari Häkkinen
Removing obsolete branch.
1:05 PM Changeset [3515] by Nicklas Nordborg
Fixes #503: We now display annotation and protocol parameter values …
1:05 PM Ticket #503 (Display more info about items in Experiment overview) closed by Nicklas Nordborg
fixed: (In [3515]) Fixes #503: We now display annotation and protocol …
1:05 PM Ticket #650 (Geometric mean) closed by Johan Enell
fixed: (In [3514]) Fixes #650
1:05 PM Changeset [3514] by Johan Enell
Fixes #650
11:58 AM Changeset [3513] by Nicklas Nordborg
Fixes #651
11:58 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) closed by Nicklas Nordborg
fixed: (In [3513]) Fixes #651
11:47 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) created by Nicklas Nordborg
The experiment overview has options for validating that an item has …
11:34 AM Ticket #650 (Geometric mean) created by Johan Enell
Create an geometric mean expression in the query package. Use the …
11:31 AM Ticket #649 (Use correct avgerage method in Experiment Explorer) created by Johan Enell
Refs. #648 and #674 When formulas and raw data have specific average …
11:30 AM Changeset [3512] by Nicklas Nordborg
References #512. Exception should sometimes hide the menubar
11:29 AM Ticket #648 (Average method for formulas and extra values) created by Johan Enell
A user should be able to specify which average method to use. When you …
9:06 AM Changeset [3511] by Nicklas Nordborg
References #470. Updated doc
8:56 AM Ticket #470 (Improve batch upload to support tar:ed files) closed by Nicklas Nordborg
fixed: (In [3510]) Fixes #470
8:56 AM Changeset [3510] by Nicklas Nordborg
Fixes #470

Jun 18, 2007:

5:52 PM Changeset [3509] by Peter Johansson
References #639. First non-tested non-generic version of the matrix …
5:01 PM Changeset [3508] by Martin Svensson
References #358. Use log4j properly in migration.
1:51 PM Changeset [3507] by Nicklas Nordborg
References #470. Upload form can now handle file names with double …
1:31 PM Changeset [3506] by Nicklas Nordborg
Show more characters from the name of recently used items
1:29 PM Tickets #622,​632,​643,​644,​645,​646,​647 batch updated by Nicklas Nordborg
fixed: (In [3505]) Fixes #632, #622, #643, #644, #645, #646, #647
1:29 PM Changeset [3505] by Nicklas Nordborg
Fixes #632, #622, #643, #644, #645, #646, #647
12:20 PM Ticket #647 (Base1PluginExecter fails when importing data) created by Nicklas Nordborg
Used the Base1NullPlugin for testing. Get the following stacktrace …
11:19 AM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) reopened by Nicklas Nordborg
The problem is not fixed: […]
11:03 AM Ticket #646 (Base1PluginExecuter fails with ConnectionClosedException) created by Nicklas Nordborg
Trying to run a BASE 1 plugin on an experiment which has experimental …
10:48 AM Ticket #645 (Base1PluginExecuter fails with NumberFormatException) created by Nicklas Nordborg
I created a new configuration for the Base1PluginExecutor with the …
10:43 AM Ticket #644 (Base1PluginExecuter doesn't have permission to read some items) created by Nicklas Nordborg
The plug-in lacks permission on lots of items. Found so far: * Extra …
8:42 AM Ticket #643 (BioAssaySetExporter doesn't have permission to extra values) created by Nicklas Nordborg
Trying to export data in BASEfile format from a bioassayset which has …

Jun 15, 2007:

1:21 PM Changeset [3504] by Nicklas Nordborg
Fixes #512
1:21 PM Ticket #512 (Feature request: switch user stays on same page if possible) closed by Nicklas Nordborg
fixed: (In [3504]) Fixes #512
11:41 AM Changeset [3503] by Nicklas Nordborg
Fixes #628
11:41 AM Ticket #628 (Create update script that fixes incorrect file sizes) closed by Nicklas Nordborg
fixed: (In [3503]) Fixes #628
11:41 AM Changeset [3502] by Nicklas Nordborg
References #518. Fixed compilation warning from Hibernate. Added …
11:38 AM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) created by Nicklas Nordborg
Dominic Oyeniran wrote: > Having an annotation type cell type with …
11:16 AM Changeset [3501] by Johan Enell
Merged log:branches/2.3.1#3431:3486 trunk.
9:47 AM Ticket #353 (Create connectivity from R/BioConductor to BASE) closed by Jari Häkkinen
worksforme: The R/BASE connectivity is accomplished as one of the clients at …
9:47 AM Changeset [3500] by Nicklas Nordborg
References #578. Changed to load the names of items by default
9:42 AM Changeset [3499] by Nicklas Nordborg
Fixes #640
9:42 AM Ticket #640 (The HTML code for the "Recent items" meny is outputted before the ...) closed by Nicklas Nordborg
fixed: (In [3499]) Fixes #640
9:40 AM Changeset [3498] by Nicklas Nordborg
Fixes #369
9:40 AM Ticket #369 (Display of ExperimentalFactor and associated Values from Experiment Page) closed by Nicklas Nordborg
fixed: (In [3498]) Fixes #369
9:39 AM Ticket #641 (Link to non-existing image in annotate.jsp) closed by Nicklas Nordborg
fixed: (In [3497]) Fixes #641
9:39 AM Changeset [3497] by Nicklas Nordborg
Fixes #641
9:38 AM Ticket #641 (Link to non-existing image in annotate.jsp) created by Nicklas Nordborg
There is a link to /images/annotation.gif which doesn't exists. The …
9:20 AM Ticket #640 (The HTML code for the "Recent items" meny is outputted before the ...) created by Nicklas Nordborg
Go to any page and check "View source...". The code for the recent …

Jun 14, 2007:

9:01 PM Ticket #639 (exportPureMatrix method) created by Peter Johansson
It would be useful to have a method exporting a BioAssaySet to pure …
4:58 PM Changeset [3496] by Martin Svensson
References #358. Started to implement a log-structure in the migration …
3:35 PM DownloadPage edited by Jari Häkkinen
2.3.1 released. (diff)
3:28 PM DownloadPage edited by Jari Häkkinen
2.3.1 released. (diff)
2:36 PM Changeset [3495] by Nicklas Nordborg
References #625. Major features are now in place. It's a bit tricky to …
2:11 PM Milestone BASE 2.3.1 completed
Bug fixes for the 2.3 release Revision log: log:branches/2.3.1@3431:3494
1:35 PM Changeset [3494] by Jari Häkkinen
Tagging version 2.3.1
12:25 PM Changeset [3493] by Nicklas Nordborg
Fixes #566
12:25 PM Ticket #566 (Plugins using the flat file parser should warn about complex column ...) closed by Nicklas Nordborg
fixed: (In [3493]) Fixes #566
10:44 AM Changeset [3492] by Nicklas Nordborg
Fixes #578
10:44 AM Ticket #578 (Update the History function to remember more than one item of each type) closed by Nicklas Nordborg
fixed: (In [3492]) Fixes #578
10:09 AM Changeset [3491] by Peter Johansson
added Date property
9:54 AM Changeset [3490] by Martin Svensson
References #426 Documentation about setting the user preferences for …

Jun 13, 2007:

8:30 PM Changeset [3489] by Nicklas Nordborg
Removed xref links from web client help text version
8:24 PM Changeset [3488] by Nicklas Nordborg
Create missing directory for appendixes
7:56 PM Changeset [3487] by Peter Johansson
added end-of-line style property and replaced don't and similiar with …
7:16 PM Ticket #638 (Read raw data headers from CEL files) closed by Nicklas Nordborg
fixed: Fixed in [3483]
7:15 PM Ticket #638 (Read raw data headers from CEL files) created by Nicklas Nordborg
3:34 PM Changeset [3486] by Jari Häkkinen
Bumped version number.
3:33 PM Ticket #624 (Update copyright in 'About' button) closed by Jari Häkkinen
fixed: (In [3485]) Fixes #624
3:33 PM Changeset [3485] by Jari Häkkinen
Fixes #624
2:48 PM Ticket #627 (History of used items in the menu bar should be saved between sessions.) closed by Nicklas Nordborg
fixed: (In [3484]) Fixes #627
2:48 PM Changeset [3484] by Nicklas Nordborg
Fixes #627
2:24 PM Changeset [3483] by Nicklas Nordborg
Read raw data headers from CEL file and put in RawBioAssay?
1:54 PM Ticket #435 (A check for reporter information is needed when adding/using ...) closed by Nicklas Nordborg
fixed: (In [3482]) Fixes #435.
1:54 PM Changeset [3482] by Nicklas Nordborg
Fixes #435.
1:41 PM Changeset [3481] by Martin Svensson
Fixes #426 Option to automatically delete a (import/export) job once …
1:41 PM Ticket #426 (Option to automatically delete a (import/export) job once it has been ...) closed by Martin Svensson
fixed: (In [3481]) Fixes #426 Option to automatically delete a …
1:16 PM Ticket #637 (Multiple plugin configurations gets mixed up.) created by base
Scenario: 1) Start a new plugin configuration of …
12:39 PM Changeset [3480] by Martin Svensson
References #426 Option to flag an import/export job to be removed, …

Jun 12, 2007:

5:23 PM Changeset [3479] by Peter Johansson
fixed some typos and grammar
2:47 PM Ticket #634 (Analysis plug-ins doesn't show up on bioassays list) closed by Nicklas Nordborg
fixed: (In [3478]) Fixes #634
2:47 PM Changeset [3478] by Nicklas Nordborg
Fixes #634
2:16 PM Changeset [3477] by Nicklas Nordborg
Removed call to deprecated method
1:56 PM Ticket #372 (Check Affymetrix CEL files vs Affymetrix Array Design during file upload) closed by Nicklas Nordborg
fixed: (In [3476]) Fixes #372
1:56 PM Changeset [3476] by Nicklas Nordborg
Fixes #372
11:18 AM Changeset [3475] by Martin Svensson
Fixes #635 The exception was thrown from the index.jsp page in …
11:18 AM Ticket #635 (AbstractExporterPlugin throws an exception when finishing an export) closed by Martin Svensson
fixed: (In [3475]) Fixes #635 The exception was thrown from the index.jsp …

Jun 11, 2007:

2:27 PM Ticket #481 (Reporter importer plug-in should report how many reporters were ...) closed by Nicklas Nordborg
fixed: (In [3474]) Fixes #481
2:27 PM Changeset [3474] by Nicklas Nordborg
Fixes #481
2:11 PM Changeset [3473] by Nicklas Nordborg
Removed strange assignment
2:06 PM Ticket #469 (Improve error handling of invalid values in import plugins) closed by Nicklas Nordborg
fixed: (In [3472]) Fixes #469.
2:06 PM Changeset [3472] by Nicklas Nordborg
Fixes #469.
9:44 AM Tickets #573,​574 batch updated by Nicklas Nordborg
fixed: (In [3471]) Fixes #574 and #573.
9:44 AM Changeset [3471] by Nicklas Nordborg
Fixes #574 and #573.
9:34 AM Ticket #636 (Kill a running job) created by Johan Enell
It should be possible for a user to kill a running job. The core sends …
9:23 AM Ticket #479 (BioAssaySetExport should allow immediate download.) closed by Martin Svensson
fixed: (In [3470]) Fixes #479 BioAssaySetExport? should allow immediate download.
9:23 AM Changeset [3470] by Martin Svensson
Fixes #479 BioAssaySetExport? should allow immediate download.
9:21 AM Ticket #635 (AbstractExporterPlugin throws an exception when finishing an export) created by Martin Svensson
The export seems to work and the file is downloaded but there is an …

Jun 8, 2007:

4:54 PM Tickets #606,​622 batch updated by Johan Enell
fixed: (In [3469]) Fixes #606 Fixes #622
4:54 PM Changeset [3469] by Johan Enell
Fixes #606 Fixes #622
2:29 PM Changeset [3468] by Nicklas Nordborg
References #574, #573 and #469. Created a simple test case with dirty …
12:18 PM Ticket #634 (Analysis plug-ins doesn't show up on bioassays list) created by Johan Enell
From the bioassayset view I press the bioassays tab. I click run …
11:29 AM Ticket #81 (SessionControl should be able to assign default groups and roles to ...) closed by Nicklas Nordborg
fixed: (In [3467]) Fixes #81
11:29 AM Changeset [3467] by Nicklas Nordborg
Fixes #81
8:37 AM Ticket #446 (File browser should have a possiblity to show creation/modifcation time) closed by Nicklas Nordborg
fixed: (In [3466]) Fixes #446
8:37 AM Changeset [3466] by Nicklas Nordborg
Fixes #446

Jun 7, 2007:

1:50 PM Ticket #630 (Check quota before uploading a new file) closed by Nicklas Nordborg
fixed: (In [3465]) Fixes #630.
1:50 PM Changeset [3465] by Nicklas Nordborg
Fixes #630.
12:15 PM Ticket #633 (Show warning when moving files offline) closed by Nicklas Nordborg
fixed: (In [3464]) Fixes #633
12:15 PM Changeset [3464] by Nicklas Nordborg
Fixes #633
12:03 PM Ticket #633 (Show warning when moving files offline) created by Nicklas Nordborg
In the current implementation the files are moved immediately.
12:00 PM Ticket #620 (Add 'write protected' property to File) closed by Nicklas Nordborg
fixed: In [3463]
11:56 AM Changeset [3463] by Nicklas Nordborg
Fxies #620
10:25 AM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) closed by Johan Enell
fixed: (In [3462]) Fixes #604
10:25 AM Changeset [3462] by Johan Enell
Fixes #604
10:12 AM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) reopened by Johan Enell
The chars \r\n in the description text from the base1 configfile …
9:28 AM Changeset [3461] by Nicklas Nordborg
Remvoed unused imports
9:27 AM Changeset [3460] by Nicklas Nordborg
References #558. All places that used Session.connection(), which has …
8:57 AM Ticket #567 (jdk6 (1.6.0) compatibility) closed by Nicklas Nordborg
fixed: (In [3459]) Fixes #567
8:57 AM Changeset [3459] by Nicklas Nordborg
Fixes #567
8:55 AM Changeset [3458] by Martin Svensson
Two minor fixes: Added database server's name and version on the …
8:51 AM Ticket #610 (Offline files are counted in the total quota in disk usage overview) closed by Martin Svensson
fixed: (In [3457]) Fixes #610 Offline files are counted in the total quota in …
8:51 AM Changeset [3457] by Martin Svensson
Fixes #610 Offline files are counted in the total quota in disk usage …
12:46 AM Ticket #564 (Add support for filtering against null values in JEP) closed by Nicklas Nordborg
fixed: (In [3456]) Fixes #564. It is now possible to use: ch(1) == null
12:46 AM Changeset [3456] by Nicklas Nordborg
Fixes #564. It is now possible to use: ch(1) == null or {{{ch(1) …
12:21 AM Changeset [3455] by Nicklas Nordborg
Fixed LazyInitialisation? problem when using the 'Copy transformation' …

Jun 6, 2007:

11:24 PM Ticket #616 (AnyToAny.exists()) closed by Nicklas Nordborg
fixed: (In [3454]) Fixes #616
11:24 PM Changeset [3454] by Nicklas Nordborg
Fixes #616

Jun 5, 2007:

2:56 PM Ticket #561 (Filter on date) closed by Nicklas Nordborg
fixed: (In [3453]) Fixes #561
2:56 PM Changeset [3453] by Nicklas Nordborg
Fixes #561
2:05 PM Ticket #631 (Remove all AnyToAny links created by Base1PluginExecuter) closed by Nicklas Nordborg
duplicate: #626
1:58 PM Tickets #558,​568 batch updated by Nicklas Nordborg
fixed: (In [3452]) Fixes #558 and #568
1:58 PM Changeset [3452] by Nicklas Nordborg
Fixes #558 and #568
12:21 PM Ticket #632 (BioAssaySetExporter breaks if names of formulas, extra values, raw ...) created by Nicklas Nordborg
The BioAssaySetExporter? uses the name of the following items to …
12:07 PM Ticket #588 (BioAssaySetExporter uses incorrect alias names in queries) closed by Nicklas Nordborg
fixed: (In [3451]) Fixes #588
12:07 PM Changeset [3451] by Nicklas Nordborg
Fixes #588
11:25 AM Changeset [3450] by Martin Svensson
Fixes #518 Database version in about view
11:25 AM Ticket #518 (Database version in about view) closed by Martin Svensson
fixed: (In [3450]) Fixes #518 Database version in about view
11:07 AM Ticket #631 (Remove all AnyToAny links created by Base1PluginExecuter) created by Johan Enell
The database update should remove all AnyToAny? links created by …
9:56 AM Changeset [3449] by Nicklas Nordborg
Fixes #572
9:56 AM Ticket #572 (genepix raw data importer config typo) closed by Nicklas Nordborg
fixed: (In [3449]) Fixes #572
9:38 AM Ticket #485 (A user's group membership is not listed.) closed by Nicklas Nordborg
worksforme
9:36 AM Ticket #582 ('Removed' option doesn't work when listing project items) closed by Nicklas Nordborg
fixed: Fixed in [3448]
9:34 AM Changeset [3448] by Nicklas Nordborg
8:39 AM Ticket #629 (Filter on removed doesn't work in Diskusage->details user/group) closed by Nicklas Nordborg
fixed: (In [3447]) Fixes #629. The 'removed' option has been removed from the …
8:39 AM Changeset [3447] by Nicklas Nordborg
Fixes #629. The 'removed' option has been removed from the preset …

Jun 4, 2007:

7:38 PM Ticket #630 (Check quota before uploading a new file) created by Nicklas Nordborg
It is annoying to first upload and then get the error message. Note …
4:24 PM Ticket #629 (Filter on removed doesn't work in Diskusage->details user/group) created by Martin Svensson
There is no effect to have the 'Removed' option unchecked in …
3:35 PM Ticket #510 (typos on Trac Developer Information) closed by Jari Häkkinen
fixed
3:34 PM DeveloperInformation edited by Jari Häkkinen
Fixes ticket:510 (diff)
3:32 PM Ticket #581 (DataCube.countSpotMappings should use SelectedExpression for it's ...) closed by Nicklas Nordborg
fixed: (In [3446]) Fixes #581
3:32 PM Changeset [3446] by Nicklas Nordborg
Fixes #581
3:24 PM Changeset [3445] by Nicklas Nordborg
Fixes #604
3:24 PM Ticket #604 (Set the description for a Base1PluginExecuter configuration from the ...) closed by Nicklas Nordborg
fixed: (In [3445]) Fixes #604
3:07 PM Changeset [3444] by Nicklas Nordborg
Fixes #575. Additional fix is needed in the trunk. See #628
3:07 PM Ticket #575 (Spot image generator creates file with invalid size in database) closed by Nicklas Nordborg
fixed: (In [3444]) Fixes #575. Additional fix is needed in the trunk. See #628
3:05 PM Ticket #628 (Create update script that fixes incorrect file sizes) created by Nicklas Nordborg
Bug #575 may have created files with incorrect size in the database. …
2:48 PM Ticket #609 ('Delete', 'Restore' and 'Share' doesn't work when listing disk ...) closed by Martin Svensson
fixed: (In [3443]) Fixes #609 'Delete', 'Restore' and 'Share' doesn't work …
2:48 PM Changeset [3443] by Martin Svensson
Fixes #609 'Delete', 'Restore' and 'Share' doesn't work when listing …
2:31 PM Changeset [3442] by Nicklas Nordborg
Fixes #576.
2:31 PM Ticket #576 (plugin web interface can't find (recent) file items emptied from trashcan) closed by Nicklas Nordborg
fixed: (In [3442]) Fixes #576.
2:24 PM DownloadPage edited by Jari Häkkinen
Updated installation doc links. (diff)
2:06 PM Ticket #627 (History of used items in the menu bar should be saved between sessions.) created by Jari Häkkinen
Relates to ticket:578
2:01 PM Ticket #618 (Write inherited annotations in biomaterials section) closed by Jari Häkkinen
fixed
1:59 PM Ticket #626 (Remove base1executor any to any links) created by Jari Häkkinen
1:32 PM Changeset [3441] by Nicklas Nordborg
Fixes #587.
1:32 PM Ticket #587 (NullPointerException in BioAssaySetExporter if no reporter columns are ...) closed by Nicklas Nordborg
fixed: (In [3441]) Fixes #587.
11:46 AM Ticket #519 (Copy Set of Annotations from one Template Item to Several Items in one go) closed by Jari Häkkinen
duplicate
10:47 AM Ticket #153 (More progress from importer plug-ins) closed by Jari Häkkinen
wontfix: The issue has evolved away.
10:46 AM Ticket #136 (Write documentation: 3c) Internals of the core API - Job queue management) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #134 (Write documentation: 3c) Internals of the core API - Checking quota) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #133 (Write documentation: 3c) Internals of the core API - Data validation) closed by Jari Häkkinen
wontfix
10:45 AM Ticket #132 (Write documentation: 3c) Internals of the core API - Transaction handling) closed by Jari Häkkinen
wontfix
9:31 AM Changeset [3440] by Nicklas Nordborg
References #613. Must also call done() when unpacking zipped files. …
9:22 AM Changeset [3439] by Nicklas Nordborg
Fixes #613.
9:22 AM Ticket #613 (The web client never calls Plugin.done() when doing contexts check) closed by Nicklas Nordborg
fixed: (In [3439]) Fixes #613.
9:14 AM Changeset [3438] by Nicklas Nordborg
References #625. Added some infrastructure and moved context checking …
8:50 AM Ticket #625 (Improve error/warning message display when selecting plug-ins) created by Nicklas Nordborg
When selecing a plug-in the current list of warnings from other, …
8:11 AM Ticket #575 (Spot image generator creates file with invalid size in database) reopened by Nicklas Nordborg
Reopens this ticket because we must also fix the incorrect file size …

Jun 1, 2007:

9:40 PM DownloadPage edited by Jari Häkkinen
(diff)
9:49 AM DownloadPage edited by Jari Häkkinen
2.3 released. (diff)
8:35 AM Changeset [3437] by Nicklas Nordborg
Fixes #614: Cannot edit a plug-in definition when the plug-in jar is …
8:35 AM Ticket #614 (Cannot edit a plug-in definition when the plug-in jar is missing) closed by Nicklas Nordborg
fixed: (In [3437]) Fixes #614: Cannot edit a plug-in definition when the …
8:15 AM Ticket #575 (Spot image generator creates file with invalid size in database) closed by Nicklas Nordborg
fixed: (In [3436]) Fixes #575: Spot image generator creates file with invalid …
8:15 AM Changeset [3436] by Nicklas Nordborg
Fixes #575: Spot image generator creates file with invalid size in database
8:04 AM Changeset [3435] by Nicklas Nordborg
Changed version number to 2.3.1pre
12:37 AM Changeset [3434] by Jari Häkkinen
Bumped version number.
12:35 AM Changeset [3433] by Jari Häkkinen
Merged log:trunk#3267:3432 into the webservices branch.
12:25 AM Changeset [3432] by Jari Häkkinen
Removed carriage return characters.

May 31, 2007:

4:08 PM Milestone BASE 2.3 completed
Documentation release.
3:54 PM Ticket #624 (Update copyright in 'About' button) created by Jari Häkkinen
3:18 PM Changeset [3431] by Jari Häkkinen
Bug fix branch for 2.3
3:17 PM Changeset [3430] by Jari Häkkinen
Tagging version 2.3
3:12 PM WikiStart edited by Jari Häkkinen
pdf name changed. (diff)
3:10 PM Changeset [3429] by Jari Häkkinen
Spell checked.
3:09 PM Changeset [3428] by Jari Häkkinen
Added short intro to overview.
2:59 PM Changeset [3427] by Jari Häkkinen
Updated current contributor list.
2:58 PM Changeset [3426] by Jari Häkkinen
Removed version number from pdf document.
2:40 PM Changeset [3425] by Nicklas Nordborg
Bumped version number to 2.3.0
2:32 PM WikiStart edited by Nicklas Nordborg
(diff)
2:26 PM DeveloperInformation edited by Nicklas Nordborg
(diff)
2:19 PM Changeset [3424] by Nicklas Nordborg
2:07 PM Ticket #623 (suggestions for time-saving improvements) closed by Nicklas Nordborg
wontfix: There was a (somtimes hectic) discussion about similar issues on the …
1:53 PM Changeset [3423] by Nicklas Nordborg
Fixed image scaling issues in the PDF version
12:42 PM Ticket #605 (Illegal characters in directoryname) closed by Johan Enell
fixed: (In [3417]) Fixes #619
12:38 PM Ticket #565 (Read "Array LIMS" section) closed by Martin Svensson
fixed: (In [3422]) Fixes #565 Read Array LIMS
12:37 PM Changeset [3422] by Martin Svensson
Fixes #565 Read Array LIMS
12:27 PM Changeset [3421] by Johan Enell
added positionBather
12:20 PM Ticket #623 (suggestions for time-saving improvements) created by base
We have used BASE for protein microarray data, and would find the …
11:55 AM Changeset [3420] by Martin Svensson
References #565
11:29 AM Ticket #602 (Migration of BASE 1 plug-in definitions is broken.) closed by Nicklas Nordborg
fixed: (In [3419]) Fixes #602: Migration of BASE 1 plug-in definitions is broken.
11:29 AM Changeset [3419] by Nicklas Nordborg
Fixes #602: Migration of BASE 1 plug-in definitions is broken.
11:24 AM Ticket #622 (After restarting a job that has crashed an 'Item already exists' error ...) created by base
Hi, I receive an 'Item already exists' error when restarting a failed …
11:20 AM Changeset [3418] by Nicklas Nordborg
API change in FlatFileParser?
11:07 AM Changeset [3417] by Johan Enell
fixed _allIntensities fixed none 2channel import
10:48 AM Changeset [3416] by Johan Enell
changed the regexp order in hasMoreData()
9:33 AM Changeset [3415] by Nicklas Nordborg
References #552, #553, #554: More information about backwards …
8:43 AM Ticket #621 (Write 'Plate' section) created by Martin Svensson
http://base.thep.lu.se/chrome/site/doc/html/userdoc/array_lims/array_li
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