Timeline
Jul 19, 2007:
- 11:11 PM Changeset [3579] by
- Fixed incorrect tooltip for "Extra value types" menu item
- 11:10 PM Ticket #690 (Not allowed to read Extra value type) closed by
- fixed: (In [3578]) Fixes #690: Not allowed to read Extra value type
- 11:10 PM Changeset [3578] by
- Fixes #690: Not allowed to read Extra value type
- 6:33 PM Changeset [3577] by
- fixed typo in docs
- 3:48 PM Changeset [3576] by
- References #451 Avoid null pointer exception
- 3:42 PM Changeset [3575] by
- Fixes #685 Add plugin parameter asking for bioassays to …
- 3:42 PM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) closed by
- fixed: (In [3575]) Fixes #685 Add plugin parameter asking for bioassays to …
- 2:46 PM Ticket #690 (Not allowed to read Extra value type) created by
- I've loaded an experiment as an administrator, all within a project. …
- 1:01 PM Ticket #689 (Increase 99 hits per page limit (list views)) created by
- I found that sharing via projects isn't exactly what I need (the other …
- 12:31 PM Changeset [3574] by
- References #658: Compare requestId as strings instead of integers to …
- 11:48 AM Ticket #688 (Don't use Float.valueOf() or Float.parseString() to parse integer values) created by
- A float doesn't have enough precision to be able to parse with correct …
- 9:49 AM Changeset [3573] by
- References #680: Fixed a bug that caused the column mapping tab to …
- 9:16 AM Changeset [3572] by
- Fixes #451 This plugin is now installed with BASE as a core plugin and …
- 9:16 AM Ticket #451 (Zipped download) closed by
- fixed: (In [3572]) Fixes #451 This plugin is now installed with BASE as a …
- 8:47 AM Changeset [3571] by
- References #451 Some minor bugs are fixed.
- 8:45 AM Changeset [3570] by
- References #551. Moved (and updated) documentation about analysis …
- 8:29 AM Ticket #684 (AbstractAnalysisPlugin should not include [Item.BIOASSAYS, Type.LIST] ...) closed by
- fixed: (In [3569]) Fixes #684: AbstractAnalysisPlugin? should not include …
- 8:29 AM Changeset [3569] by
- Fixes #684: AbstractAnalysisPlugin? should not include [Item.BIOASSAYS, …
- 8:23 AM Ticket #687 (Make it possible for other plug-ins than the FormulaFilter to be ...) created by
- To make this work we need to create an interface (say …
- 8:19 AM Ticket #686 (Make it possible for core analysis plug-ins to work on a subset of ...) created by
- Once ticket #685 is in place it should not be so difficult. The core …
- 8:15 AM Ticket #685 (Add plugin parameter asking for bioassays to AbstractAnalysisPlugin) created by
- This will make it easier to implement plug-ins that only work on a …
- 7:42 AM Ticket #684 (AbstractAnalysisPlugin should not include [Item.BIOASSAYS, Type.LIST] ...) created by
- This context is optional and is not supported by all plug-ins.
Jul 18, 2007:
- 10:58 PM Ticket #683 (Holding down SHIFT, CTRL or ALT when creating a new item should ...) created by
- Bob MacCallum? wrote: > I don't know if this would be dangerous, but …
- 3:46 PM Changeset [3568] by
- References #451 Packer plugin for zip, tar.gz and tar.bz2 format …
- 2:43 PM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) closed by
- worksforme: I am not able to reproduce this
- 2:41 PM Ticket #670 (Update doc on formulas and extravalues) closed by
- invalid: There is no documentation written that can be updated.
- 2:39 PM Ticket #682 (Object with id: 3 was not of the specified subclass: ...) closed by
- duplicate: Duplicate of #509. This is a problem with MySQL. You have the …
- 1:54 PM Ticket #682 (Object with id: 3 was not of the specified subclass: ...) created by
- Hi! After BASE2 first start i loaded some plugin for Affy (RMA e …
- 11:42 AM Changeset [3567] by
- Fixes #681
- 11:42 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) closed by
- fixed: (In [3567]) Fixes #681
- 11:39 AM Ticket #681 (Plug-in configuration wizard may use invalid default value for item ...) created by
- The plug-in/job configuration wizard automatically selects the item …
- 10:41 AM Tickets #678,679,680 batch updated by
- fixed: (In [3566]) Fixes #678, #679, #680
- 10:41 AM Changeset [3566] by
- Fixes #678, #679, #680
- 9:48 AM Ticket #680 (The 'Test with file' function tries to map columns, even if the parent ...) created by
- 9:44 AM Ticket #679 (The 'Test with file' function should take the file to test from the ...) created by
- Currently, only the regular expressions, and other parser settings are …
- 9:42 AM Ticket #678 (The 'Test with file' function doesn't clear values from parent form) created by
- 1. Enter a plug-in configuration sequence for one of the flat file …
Jul 17, 2007:
- 1:33 PM Changeset [3565] by
- References #551: Moved doc about import plug-ins from old to new …
- 11:28 AM Changeset [3564] by
- Fixes #675, #676 and #677
- 11:28 AM Tickets #675,676,677 batch updated by
- fixed: (In [3564]) Fixes #675, #676 and #677
- 9:56 AM Ticket #677 (The auto detect file format function doesn't use Plugin.isInContext ...) created by
- 9:54 AM Ticket #676 (The autodetect file format function doesn't check ...) created by
- 9:53 AM Ticket #675 (The autodetect file format function never calls Plugin.done()) created by
Jul 16, 2007:
- 2:47 PM Ticket #470 (Improve batch upload to support tar:ed files) closed by
- fixed: (In [3563]) Fixes #470
- 2:46 PM Changeset [3563] by
- Fixes #470
- 2:35 PM Tickets #649,674 batch updated by
- fixed: (In [3562]) Fixes #649 and #674
- 2:35 PM Changeset [3562] by
- Fixes #649 and #674
- 2:16 PM Ticket #674 (Add possibility to set average method for extended properties and raw ...) created by
- Relates to #648 and #649
- 12:04 PM Changeset [3561] by
- Fixes #672: Enable AnnotationRestriction? to be used on joined tables
- 12:04 PM Ticket #672 (Enable AnnotationRestriction to be used on joined tables) closed by
- fixed: (In [3561]) Fixes #672: Enable AnnotationRestriction? to be used on …
- 12:02 PM Changeset [3560] by
- References #573. Must also trim annotation values or the filter will …
- 9:55 AM Changeset [3559] by
- References #625. Use correct plugin configuration.
- 9:44 AM Changeset [3558] by
- Fixes #669
- 9:44 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) closed by
- fixed: (In [3558]) Fixes #669
- 9:01 AM Changeset [3557] by
- Fixes #648
- 9:01 AM Ticket #648 (Average method for formulas and extra values) closed by
- fixed: (In [3557]) Fixes #648
- 8:57 AM Ticket #648 (Average method for formulas and extra values) reopened by
- The update sets the average method to geometric mean for all formulas …
- 8:43 AM Tickets #650,648 batch updated by
- fixed: (In [3556]) Fixes #648 and #650
- 8:43 AM Changeset [3556] by
- Fixes #648 and #650
- 8:21 AM Ticket #648 (Average method for formulas and extra values) reopened by
- Add @since to javadoc for new methods.
- 8:18 AM Ticket #650 (Geometric mean) reopened by
- Add correct @version number in javadoc.
Jul 13, 2007:
- 4:29 PM Changeset [3555] by
- Reference #451 The actual compression is not quite written yet.
Jul 12, 2007:
- 4:46 PM Ticket #673 (BioAssayExporter basefile: Wrong count in section spots) created by
- The header count is wrong in section spots when a matrix is exported. …
- 4:28 PM Ticket #671 (Exporting basefiles - the last line of the bioassay set is absent) closed by
- fixed: (In [3554]) Fixes #671, References #590 Test for BioAssaySetExporter? …
- 4:28 PM Changeset [3554] by
- Fixes #671, References #590 Test for BioAssaySetExporter? added which …
Jul 10, 2007:
- 8:26 PM Ticket #672 (Enable AnnotationRestriction to be used on joined tables) created by
- For example, the query below gives a stracktrace, since annotations …
Jul 9, 2007:
- 12:45 PM Ticket #375 (Shared items: the shareness of items should be listed in the ...) closed by
- fixed: Decided after a closer look to not change the view-pages.
- 11:39 AM Changeset [3553] by
- References #375. The list pages is done but the view pages should be …
Jul 6, 2007:
- 4:53 PM Changeset [3552] by
- References #375. Only wants to do a commit before the weekend.
- 2:03 PM Ticket #671 (Exporting basefiles - the last line of the bioassay set is absent) created by
- Greetings! I've discovered a problem with exporting BASEfiles. I …
Jul 5, 2007:
- 4:20 PM Changeset [3551] by
- References #375. Added column with projects, groups, users that an …
- 1:18 PM Ticket #611 (Improvements of Trashcan) closed by
- fixed: (In [3550]) Fixes #611 Improvements of Trashcan. Changed confusing …
- 1:18 PM Changeset [3550] by
- Fixes #611 Improvements of Trashcan. Changed confusing button …
Jul 4, 2007:
- 2:59 PM Changeset [3549] by
- References #611. Added new icon and text on the delete button in …
- 11:36 AM Changeset [3548] by
- References #375.Missed one view-page in the last commit
Jul 3, 2007:
- 11:41 AM Changeset [3547] by
- References #375. The first part is done, listing which …
- 11:26 AM Ticket #470 (Improve batch upload to support tar:ed files) reopened by
- Section 8.2.1 Uploading a new file. Update the information on …
- 11:17 AM Ticket #670 (Update doc on formulas and extravalues) created by
- Depends on #669, #546 Update documentation on formulas and …
- 11:12 AM Ticket #669 (Add possibility to set average method to fomulas and extravalues from ...) created by
- Depends on #648
- 10:53 AM Ticket #668 (Displaying icons in the text) created by
- Icons are displayed in different ways in the text. …
- 10:39 AM Ticket #667 (Move ch. 7 to a lower level) created by
- I think the that …
- 10:29 AM Ticket #666 (Image in chapter 6.2.3) created by
- I think an image on single-item view for a project should be added to …
- 10:05 AM Ticket #665 (Links in the documentation) created by
- I think we should discuss how the links are used in the documentations …
- 9:46 AM Ticket #664 (Remove chapter 6.1.3) created by
- I think that the section 6.1.3 Share an item to other users should be …
Jul 2, 2007:
- 5:54 PM Ticket #663 (TOC is to big) created by
- The table of contents of the documentations is getting big. Maybe its …
- 3:51 PM Milestone BASE 2.3.2 completed
- 3:50 PM Changeset [3546] by
- Removing obsolete branch.
- 3:45 PM Changeset [3545] by
- Merged log:branches/2.3.2#3537:3542 to trunk.
- 9:41 AM Ticket #191 (Mobile number field in user info?) closed by
- fixed: (In [3544]) Fixes #191. Updating schema version and added …
- 9:41 AM Changeset [3544] by
- Fixes #191. Updating schema version and added since(javadoc) to new methods
Jun 30, 2007:
- 1:02 AM RobotsTxt edited by
- (diff)
- 12:24 AM DownloadPage edited by
- 2.3.2 released. (diff)
- 12:11 AM Changeset [3543] by
- Tagging version 2.3.2
Jun 29, 2007:
- 11:31 PM Changeset [3542] by
- Bumping version number.
- 11:29 PM Ticket #191 (Mobile number field in user info?) reopened by
- I think the schema version should be updated as well. The extended …
- 4:46 PM Tickets #661,662 batch updated by
- fixed: (In [3541]) Fixes #661, #662
- 4:46 PM Changeset [3541] by
- Fixes #661, #662
- 2:39 PM Changeset [3540] by
- corrected address to BASE-hacks trac site
- 2:35 PM Ticket #191 (Mobile number field in user info?) closed by
- fixed: (In [3539]) Fixes #191 Mobile number field in user info?
- 2:35 PM Changeset [3539] by
- Fixes #191 Mobile number field in user info?
- 2:30 PM Ticket #660 (Parameters should be sorted on position) closed by
- fixed: (In [3538]) Fixes #660 Added permission delete for File and read for Job
- 2:30 PM Changeset [3538] by
- Fixes #660 Added permission delete for File and read for Job
- 9:54 AM Ticket #662 (Print 'section\tsettings') created by
- If the first parameter isn't section, 'section\tsettings' should be …
- 9:50 AM Ticket #661 (Print parameters in correct order) created by
- The parameters sent to BioAssaySetExporter?.exportBaseFile should be …
- 9:45 AM Ticket #660 (Parameters should be sorted on position) created by
- The job parameters that the Base1PluginExecuter sends to …
- 9:36 AM Changeset [3537] by
- New patch release branch for 2.3
- 9:09 AM Changeset [3536] by
- References #625. This will correct the issue related to #657
Jun 28, 2007:
- 7:10 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) closed by
- duplicate: Should be fixed as part of #625.
- 7:09 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) reopened by
- The checked in changes fixes the problem, but it also destroys the fix …
- 5:43 PM Changeset [3535] by
- References #191
- 4:13 PM Ticket #658 (Invalid request ID: Data in your configuration wizard has become ...) closed by
- worksforme
- 3:40 PM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) closed by
- fixed
- 2:53 PM Changeset [3534] by
- References #657
- 1:46 PM Ticket #659 (Add wiki page describing BASE features) created by
- A features list could useful from the fist page in the wiki. …
- 1:21 AM Ticket #658 (Invalid request ID: Data in your configuration wizard has become ...) created by
- I am trying to start RMAExpress/Plier, but after selecting bioassays …
- 12:22 AM Ticket #657 (Plug-in wizard may selects wrong plug-in if only one of several ...) created by
- the affymetrix INTENSITY plug-ins are not recognized. When "New root …
Jun 27, 2007:
- 11:22 PM Changeset [3533] by
- Merged log:trunk#3433:3532 into the webservices branch.
- 10:33 PM Ticket #656 (Update release procedure) created by
- 4:35 PM Ticket #358 (Better info from Migration tool) closed by
- fixed: (In [3532]) Fixes #358 Better info from migration tool
- 4:35 PM Changeset [3532] by
- Fixes #358 Better info from migration tool
Jun 26, 2007:
- 1:12 PM Changeset [3531] by
- References #358. Some changes on the log statements
Jun 25, 2007:
- 10:05 AM Ticket #655 (Plugins -> defintions fails with 'illegal attempt to dereference ...) created by
- illegal attempt to dereference collection …
Jun 23, 2007:
- 8:31 PM Ticket #654 (Batch deletion of reporters) created by
- From a mail exchange with Phillippe: >> Just a note regarding deleting …
Jun 22, 2007:
- 11:22 AM Changeset [3530] by
- some admin changes
Jun 21, 2007:
- 5:16 PM Changeset [3529] by
- References #358. Use log4j properly in migration. Updated more …
- 4:20 PM Ticket #648 (Average method for formulas and extra values) closed by
- fixed: (In [3528]) AverageMethod? added Fixes #648
- 4:20 PM Changeset [3528] by
- AverageMethod? added Fixes #648
- 1:19 PM Ticket #642 (Add method that finds an enumerated annotation value that can ignore ...) closed by
- fixed: (In [3527]) Fixes #642: Add method that finds an enumerated annotation …
- 1:19 PM Changeset [3527] by
- Fixes #642: Add method that finds an enumerated annotation value that …
- 12:50 PM Ticket #252 (Make the trashcan smarter when deleting items) closed by
- fixed: (In [3526]) Fixes #252: Make the trashcan smarter when deleting items
- 12:50 PM Changeset [3526] by
- Fixes #252: Make the trashcan smarter when deleting items
- 8:22 AM Ticket #653 (Implement DbControl.flush() method) created by
- This method should flush queued changes to the database in the same …
Jun 20, 2007:
- 5:33 PM Ticket #577 (exception while emptying trash (experiment and raw bioassays)) closed by
- duplicate: I have now been able to reproduce this problem. It is triggered when a …
- 4:56 PM Changeset [3525] by
- References #358. Use log4j properly in migration. Updated more files…
- 3:01 PM Changeset [3524] by
- References #583: Send message at job completion only if user has …
- 2:32 PM Ticket #583 (Allow changing the array design of a raw bioasay when it has raw data) closed by
- fixed: (In [3523]) Fixes #583: Allow changing the array design of a raw …
- 2:32 PM Changeset [3523] by
- Fixes #583: Allow changing the array design of a raw bioasay when it …
- 1:28 PM Changeset [3522] by
- Fixes #650 added some info to the geometricMean method
- 1:28 PM Ticket #650 (Geometric mean) closed by
- fixed: (In [3522]) Fixes #650 added some info to the geometricMean method
- 10:44 AM Changeset [3521] by
- Fixes #556: Add a favicon.ico
- 10:44 AM Ticket #556 (Add a favicon.ico) closed by
- fixed: (In [3521]) Fixes #556: Add a favicon.ico
- 9:36 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) closed by
- fixed: (In [3520]) Fixes #652: Experiment explorer throws exception when …
- 9:36 AM Changeset [3520] by
- Fixes #652: Experiment explorer throws exception when showing average …
- 9:20 AM Ticket #652 (Experiment explorer throws exception when showing average values and ...) created by
- Go to the Experiment explorer for an experiment. 1. Display more …
- 9:00 AM Changeset [3519] by
- References #625. Fixed ClassCastException? when using auto-detect and …
- 8:48 AM Ticket #637 (Multiple plugin configurations gets mixed up.) closed by
- fixed: (In [3518]) Fixes #637
- 8:48 AM Changeset [3518] by
- Fixes #637
Jun 19, 2007:
- 4:20 PM Changeset [3517] by
- References #650 Creates Ql and String from the parts already made in …
- 3:38 PM Ticket #650 (Geometric mean) reopened by
- The LN() and EXP() functions have different names in different …
- 2:10 PM Changeset [3516] by
- Removing obsolete branch.
- 1:05 PM Changeset [3515] by
- Fixes #503: We now display annotation and protocol parameter values …
- 1:05 PM Ticket #503 (Display more info about items in Experiment overview) closed by
- fixed: (In [3515]) Fixes #503: We now display annotation and protocol …
- 1:05 PM Ticket #650 (Geometric mean) closed by
- fixed: (In [3514]) Fixes #650
- 1:05 PM Changeset [3514] by
- Fixes #650
- 11:58 AM Changeset [3513] by
- Fixes #651
- 11:58 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) closed by
- fixed: (In [3513]) Fixes #651
- 11:47 AM Ticket #651 (Experiment overview doesn't find missing annotations if an item ...) created by
- The experiment overview has options for validating that an item has …
- 11:34 AM Ticket #650 (Geometric mean) created by
- Create an geometric mean expression in the query package. Use the …
- 11:31 AM Ticket #649 (Use correct avgerage method in Experiment Explorer) created by
- Refs. #648 and #674 When formulas and raw data have specific average …
- 11:30 AM Changeset [3512] by
- References #512. Exception should sometimes hide the menubar
- 11:29 AM Ticket #648 (Average method for formulas and extra values) created by
- A user should be able to specify which average method to use. When you …
- 9:06 AM Changeset [3511] by
- References #470. Updated doc
- 8:56 AM Ticket #470 (Improve batch upload to support tar:ed files) closed by
- fixed: (In [3510]) Fixes #470
- 8:56 AM Changeset [3510] by
- Fixes #470
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